Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTTGGCACCTTTCCGTTCAATTTCAACGTTGCAATTACCCGCCATCTTTCCAGACCTTACCTTTTATTCAACCACCTCCTTCGCTACTCTCAATTCACTCTCTCTCTCTATCTCTGCATCTGAAAATGGAGGGTTTAATCAAGGGTCTCATAGATGTTGCAATCGGTCACGACGACGACAAGAACAACGAACAATCGGCTTCCCAGTCTCGTGACGAACGATCCAGATCCACTTGGGCTCAGGTACCTCTGGGTTTTGTGATACTGGATTTGGTTTTTAACATGTTTTGTGATGATTTGGGCTTGGGATTGTGCAGGTAGTCACTGGGGAGGAGGATGCGGATCGAGATGGGGGAGATCGGGGACATGATCGGAGACATGGGAATGATTGGAATCGGAGGGACAATGAGGTCGGTTTTGGGCTGAGATTGATTGTGGAATTGAATGTATTTGTGGTTTTGAATTGGACTTTATGTGGAATTGAAATCTGGGGTGTTATTGATCGTTTTTCCAGAAAGAGGGTCGTTCGCGGCGTGAGGAGTGGGAGGTTCAGGGTTCGAGGATTTCTGGTCAACAACAGCAGGTTAGATCTGTTTGCGTCACCATTCCAAGTGTTGGGATCATTTTTTCTCATTGTTATACTACTCTCAAGTCGCTCTAATGATCTTTCCTTCCAATGAGATTTAGGCATTTTGCAAGTTTAGATTCACATTTCAGTTGGGTAATTAATAGGAAGCAAAGAAAATACACTCTTGAATTTATGAGAGAAACTATAAAACTACTTTGAATCTGTAGTTAATGGTTACTAGAGAATGAAGATATTCAAATCTATATTCAACTGTCATTAGAAAGTTGTTACATTGATAATTTTGTAGGAAGCGGGGTTTGGATAAAATTACTGCTTAGCATATGGTATAACAATATAATACCATTGAAAGTGTAGGCCTTGAGCGGATAGAGACTTTTTATTAGAAAATGGCAAACCATGACCAAGCCTTCCCCTCCCACCACCACTCACCCTGATAATGGCAATAACCCCACCTCTGAAGAATAGAACAGTTCCCATCGAAAGAAAGAAGTTCCATAGTGTTGGATGGTAGGTATGGAGCGAGTAGAGTGAAGATTTCAGAGTTTACTGGAGACAGGGTCTTCTTCATAGCTTTACATTGGGAAACTTTGAATTGGCTGTTATGGCCCCTTAATCCCTAATCCTATGGACAATTCTCTACTAATTCTCTTTTAGCAGACATGGGTCGTATCACTTACCTACCTCATTGAGACCTCTTTGTCTAAACCCATATAGAAGGACAACTACCCAAAGAAACTCCAAATTTTCCTTTGGGAGCTATGGCACAGTCATCAATACCAAAAATATTCTCCAAAGGCTTATGCTATTCATGACTTTATCCCCTGGGTGGTGTTCTCTTTGTAAACCTGATGACGAAACCCAGAGTCACATCTTTATATACTGTCCATTTGCCAGGAGATTCTTCCTTTGGCTGGCATTTGGTTTGTCCTACAAATGTTAAGGATTTTCTCATCTCAGTTTCTATTGGGGCACCCATTCAAGAATATTAAGGCTTTGCTGTCATAAATTTTACATCCCATTTGTAAATTTCATGCTTCAATGAATTACATACATACATATATACATACATAAATATGTATGTGTTGTATATTATATGTAGATACATACATATATACATACATATATACATGTATATCGAGTAAATTGTACAAGCTTTGTTATTTCGACCTCTTCTAAGGTCTTATCATTTGATTCTTATCTTGATATCTATCAAGTTGCTTACTCTAGAAAGAGAACTTTTCCCGCAAGTGATGATAAATGCTGCAGTTGCTTGTATTAGAATTTTTTTTTTTTTTGACATTTTCTTTTATTAGATTCAATTACGTGGATTGATGTTTTACTATTTTATCACTATTTTAGTCCTAATAGCAGTTTCATTTCCTCCAATCTGATTGATAAAATGCTGACTTCATATGAAACGTGTGAACAGGGTGAATATGGTAGCGAGCATGGTTACAACAGAGATCAGTGGGCTAAAAAGGTATTTTTCTCTTGTTCTTTAATTTTCTGTGTTTTCTATTCCATGAAATTGATTGGGCCCTTTTTGATCACCATTTGGTTTTTGATTTTTAGGTTTCGAAATTGAAGCCTATAAATGGGGGTTTCCTTGTTTTGATATCTACTTTTTATATATTTTCACAAACCAAGCCATGTTTAGAAAACTAAAAAAAGTAGTTTTTAAAATCTTGTTTTAGTTTATGAATTTAGCAAAGAATTCAAATGTTTTCTTTAAGAAAGATGAAATTCATGGTAGAAAAATAATGTGAAAACATGCACAATGTTCCAAATCTAAAAACCAACTAGAAATAAAAAATAAATTGGTTATCAAACGAGAACTTAGTTCTTTTCACTTATATTTTCTAATGGTATTAACTGGCACAGGAGAGCTCTGAGGAGAACAATGATGGGTGGGAGACTGTCCACAAAAAGGCACCTAGGAAACATCACAAGGTTACTTATCATACGAAAAGTATTTTGACAAATACATGTTGGATGTGTTGTTTTATATGGCCAATTAGTCCATATACTTGCTTGGAAGAGAACTTGTAACAAAATTTCAGTTATTTTATACATTACATTAAAGAGAGCCTTAACGTTATGCAAGATGTCATTGAGTCTGAATGCCTGACTTGGATGGTGTACGAACATAACGATGAAATCATTGGTGAAGCTCTTGAAGTAAGCAATGTTTGTAAGCATGATGATCATGGGCATTTATGATGTTCATTTAGAACTAAAAGTTGATTGTGTTTATTAGTTGATAATTGGGGTGTGCAGTAGCATTAGTTATGGTTAGCAAATCTTGAGTGTGGCATATTTAGCTACAGATGCATAATTAGTCATACCTTTTCCAATCGTACTATCTTTTTTGATTTTTTCCTTTTTTTAGAGCAAGAAACCAAACTTTCATTGAGAAAAATAATAATAATATATAAAGGCATACAAAAAAAACAATCATGTTTAATCTACAAATGGGTGTTCACCTTGGGATCATGCCGTCATCTATGTGGTGGTAGTCTGATGTTTGGAGGATTCAGAGGATTTGTGATGTTTGATGTTTCTATTACAAGATCATGCTTACCATGCATTTCAATTTACTCATTTTTAATTTATAGAAGTGGCATTTTCACCTAGTTTCTGTGCAAGTCGTTTTGATTTTTGAATAGTGGTGAACTTTGAGAGGTTTCATGATAGTTGCTTGGAGTTCAAACAAACTCTAAAATTTACTCCTCTGCAATAAATTTTTAGGTGCAGGTAGAAAATTGGGAAGGATACAAACGGCCTGCCAGTGAACAAAACTATTCTGATGAGGTGGAAGTAGGTGCTGAGCTAGAACCCTCTGAGGACGAGCTTGCTGATTTTGCCCGGGCCTGTAACAAGCTATGGGAACTTGATTTAAATCGTTTGGTACCTGGACAAGATTATGAAATTGATTGCGGTGAAGGAAAAAGGGTCCACGGAAGGGAAGATATGGCACAAGCAAGCCTCTTTAGTTGGGTTAGTGAAGACGTATTTAGGAAGCCAACATTTTCACGTTTTTGCTCTCTACTTGATAACTACAATCCCGATCAAGGGAGCAAAGAAGTTGTGACACCTGAGGAGAAGCAAGAGCAGGCTGCATTCATAGAAGAAATTAGTAGAACTGCACCAATTAAGTACCTTCATAAGTACCTTTCATACAAGGGAGTTACATCCAATGACTATCAAGATTTCAAACGTATGCTGACCAGTCTGTGGTTCGATCTTTATGGTCGGGGTGGAACATCTCATTCCTCTTCTGCCTTTGAACATGTTTTTGTTGGAGAAATCAAGCAACAAGGTGGACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGGTTAGTGCCTTCCTGAGATTAGCTATCACAGAAGATAATGCTTAAATTTTAAGCTATAAATGATCAATCTGTTTAATATTGTATCTAACCGTTGAGGCCCTTCATGTATTCACCAAGAGCAATAGCAACGGGGCGGAACAAAGAAGGAAAATGTTGCCCTCTTAGCTTGTCTTAGGTTAAAAAACTATATAAAATGGTCAAAATTTTAAGGTTTTCTCTCTAATTTGCTAATTTCCGAATTATATATATAATAAGAAAAGTTAGAAAGTAACATCTTTCTTCATCGTTTGTAAACTCTGGATCCTCCCCTTAAATGGAAATGAACAACTTGGATCAGTTCGTCTTAGAAGACATTTTTAAATTGTGAAGTTGACTGGGTTCTTGTACGTAAATGAATATAACATTTTGTCCACAAATCTAACGAACCTATCATTTTCTTAATATTAGTATTTTCTTTGCTGGAGTTTCCCGAACTTATTATCTTCCTTTATGTCTGACTTTTTTTCCATGTGCATTTATTCCAAATCTAGTTTTACCTTGAAGAAGCTAAAGGGAGTGTTGACTATCAAGGTTATATTTTCCCCAGACGACGTGGCCAGTTTGTAAGTAACTCAACTTCACGGTTTTTTCTTTTGGTGGTATTTGATGTTGAGATGTAAAGAAATAAGTTGTGAATGCCCATGTCATGCAGCATCATTCAGGCTGTTAAAAGAAACTAAATGATCATTTATCATTCAGGCCTTTTGTGGTTACCATACAAGAATAACCTTCATTTTCCTGACATTCTTCAGGCGATTAAATTTGTGTTATTCCATCAAACTTTAGTTTTCATTAGATCAGCCTTTCCCACTTTAAATTCTAGAGCTTGCCTCACTTTCTGGAAGATAAGCATACTCTTCTCTGTAATCTAATCCATGTCTCTTACTTAACTATTTATTTGCTAACCCTGCAGCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTTGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAGTAGGAGTTAGCCCTGAGTTTGAACTTGCACTGTATACACTATGCTTCTTCCTTGGCGGAGAGGATAACCATGTTGAGCTCGGACCATATCCTGTTAATATCAAGTGCTATCGGTTAGGAAACAAAATCGGGTCTGTGTTTCCTGTAGCTGAGTCTTGAAGTTCCTTCACTGGGATTAATCCAGTTATTTCGTCTAAATTCAGCCGTATACATCTAAGTAAGGATTGTATCATAGATTTTGAGATAGTGATATCTTTAGAAGGTGACCAAATACTTTGTGATGGAATAACATGATTCTCAGGATGTACTCATTAGTTCCTAGAGGATACTTGAACTTTTGTATTATCACATGGATTTGCAAGGGGTGCCTTCATATCTTCCTTATTTTGTAAATGCTTTGTAACGATACTGAGTCAAGCAACTGATGTTTGCTTTCATTTCTTCCCAAAACTGAATGCATGTGAAACATTATCCAAATGGAGTTGATTCTCACTTTTCCTTCTATATGTATATTCATTTTGTACCTTTCTCTGCATATTGCTACTATGTAATATCAATTCAATTCAATTCAATTCTTATTCTATAACATGGGGAGGAACTTGGATCATATACGG
mRNA sequence
CACTTGGCACCTTTCCGTTCAATTTCAACGTTGCAATTACCCGCCATCTTTCCAGACCTTACCTTTTATTCAACCACCTCCTTCGCTACTCTCAATTCACTCTCTCTCTCTATCTCTGCATCTGAAAATGGAGGGTTTAATCAAGGGTCTCATAGATGTTGCAATCGGTCACGACGACGACAAGAACAACGAACAATCGGCTTCCCAGTCTCGTGACGAACGATCCAGATCCACTTGGGCTCAGGTAGTCACTGGGGAGGAGGATGCGGATCGAGATGGGGGAGATCGGGGACATGATCGGAGACATGGGAATGATTGGAATCGGAGGGACAATGAGAAAGAGGGTCGTTCGCGGCGTGAGGAGTGGGAGGTTCAGGGTTCGAGGATTTCTGGTCAACAACAGCAGGGTGAATATGGTAGCGAGCATGGTTACAACAGAGATCAGTGGGCTAAAAAGGAGAGCTCTGAGGAGAACAATGATGGGTGGGAGACTGTCCACAAAAAGGCACCTAGGAAACATCACAAGGTGCAGGTAGAAAATTGGGAAGGATACAAACGGCCTGCCAGTGAACAAAACTATTCTGATGAGGTGGAAGTAGGTGCTGAGCTAGAACCCTCTGAGGACGAGCTTGCTGATTTTGCCCGGGCCTGTAACAAGCTATGGGAACTTGATTTAAATCGTTTGGTACCTGGACAAGATTATGAAATTGATTGCGGTGAAGGAAAAAGGGTCCACGGAAGGGAAGATATGGCACAAGCAAGCCTCTTTAGTTGGGTTAGTGAAGACGTATTTAGGAAGCCAACATTTTCACGTTTTTGCTCTCTACTTGATAACTACAATCCCGATCAAGGGAGCAAAGAAGTTGTGACACCTGAGGAGAAGCAAGAGCAGGCTGCATTCATAGAAGAAATTAGTAGAACTGCACCAATTAAGTACCTTCATAAGTACCTTTCATACAAGGGAGTTACATCCAATGACTATCAAGATTTCAAACGTATGCTGACCAGTCTGTGGTTCGATCTTTATGGTCGGGGTGGAACATCTCATTCCTCTTCTGCCTTTGAACATGTTTTTGTTGGAGAAATCAAGCAACAAGGTGGACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGTTTTACCTTGAAGAAGCTAAAGGGAGTGTTGACTATCAAGGTTATATTTTCCCCAGACGACGTGGCCAGTTTCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTTGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAGTAGGAGTTAGCCCTGAGTTTGAACTTGCACTGTATACACTATGCTTCTTCCTTGGCGGAGAGGATAACCATGTTGAGCTCGGACCATATCCTGTTAATATCAAGTGCTATCGGTTAGGAAACAAAATCGGGTCTGTGTTTCCTGTAGCTGAGTCTTGAAGTTCCTTCACTGGGATTAATCCAGTTATTTCGTCTAAATTCAGCCGTATACATCTAAGTAAGGATTGTATCATAGATTTTGAGATAGTGATATCTTTAGAAGGTGACCAAATACTTTGTGATGGAATAACATGATTCTCAGGATGTACTCATTAGTTCCTAGAGGATACTTGAACTTTTGTATTATCACATGGATTTGCAAGGGGTGCCTTCATATCTTCCTTATTTTGTAAATGCTTTGTAACGATACTGAGTCAAGCAACTGATGTTTGCTTTCATTTCTTCCCAAAACTGAATGCATGTGAAACATTATCCAAATGGAGTTGATTCTCACTTTTCCTTCTATATGTATATTCATTTTGTACCTTTCTCTGCATATTGCTACTATGTAATATCAATTCAATTCAATTCAATTCTTATTCTATAACATGGGGAGGAACTTGGATCATATACGG
Coding sequence (CDS)
ATGGAGGGTTTAATCAAGGGTCTCATAGATGTTGCAATCGGTCACGACGACGACAAGAACAACGAACAATCGGCTTCCCAGTCTCGTGACGAACGATCCAGATCCACTTGGGCTCAGGTAGTCACTGGGGAGGAGGATGCGGATCGAGATGGGGGAGATCGGGGACATGATCGGAGACATGGGAATGATTGGAATCGGAGGGACAATGAGAAAGAGGGTCGTTCGCGGCGTGAGGAGTGGGAGGTTCAGGGTTCGAGGATTTCTGGTCAACAACAGCAGGGTGAATATGGTAGCGAGCATGGTTACAACAGAGATCAGTGGGCTAAAAAGGAGAGCTCTGAGGAGAACAATGATGGGTGGGAGACTGTCCACAAAAAGGCACCTAGGAAACATCACAAGGTGCAGGTAGAAAATTGGGAAGGATACAAACGGCCTGCCAGTGAACAAAACTATTCTGATGAGGTGGAAGTAGGTGCTGAGCTAGAACCCTCTGAGGACGAGCTTGCTGATTTTGCCCGGGCCTGTAACAAGCTATGGGAACTTGATTTAAATCGTTTGGTACCTGGACAAGATTATGAAATTGATTGCGGTGAAGGAAAAAGGGTCCACGGAAGGGAAGATATGGCACAAGCAAGCCTCTTTAGTTGGGTTAGTGAAGACGTATTTAGGAAGCCAACATTTTCACGTTTTTGCTCTCTACTTGATAACTACAATCCCGATCAAGGGAGCAAAGAAGTTGTGACACCTGAGGAGAAGCAAGAGCAGGCTGCATTCATAGAAGAAATTAGTAGAACTGCACCAATTAAGTACCTTCATAAGTACCTTTCATACAAGGGAGTTACATCCAATGACTATCAAGATTTCAAACGTATGCTGACCAGTCTGTGGTTCGATCTTTATGGTCGGGGTGGAACATCTCATTCCTCTTCTGCCTTTGAACATGTTTTTGTTGGAGAAATCAAGCAACAAGGTGGACAAGAGGTTTCTGGTTTCCACAACTGGCTTCAGTTTTACCTTGAAGAAGCTAAAGGGAGTGTTGACTATCAAGGTTATATTTTCCCCAGACGACGTGGCCAGTTTCCTGATTCAGAAACTCAATTGCTTACCATTCAGTTTGAATGGAATGGTGTTCTCAAATCTGTCTCAAGCACTTTAGTAGGAGTTAGCCCTGAGTTTGAACTTGCACTGTATACACTATGCTTCTTCCTTGGCGGAGAGGATAACCATGTTGAGCTCGGACCATATCCTGTTAATATCAAGTGCTATCGGTTAGGAAACAAAATCGGGTCTGTGTTTCCTGTAGCTGAGTCTTGA
Protein sequence
MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRHGNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGWETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIKCYRLGNKIGSVFPVAES
Homology
BLAST of CmoCh06G008530 vs. ExPASy Swiss-Prot
Match:
Q503V9 (Poly(U)-specific endoribonuclease-B OS=Danio rerio OX=7955 GN=endoub PE=2 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 6.5e-57
Identity = 119/265 (44.91%), Postives = 153/265 (57.74%), Query Frame = 0
Query: 177 KLWELDLNRLVPGQDYEID----CGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCS 236
+LW+ D NRL PG DY I G+ V D A LFS+V E++F+K TF F S
Sbjct: 14 ELWDNDTNRLRPGIDYRISLQGKAGDLAGVPDDSDGAGMPLFSFVDENIFKKETFLAFIS 73
Query: 237 LLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRML 296
LLDNY D G E+VTPEE+ E F++ + +T +K HKYL K ++ D FK+ L
Sbjct: 74 LLDNYESDTGEPEIVTPEEEMENHRFLDSVIKTPTMKIAHKYLVEKRLSPEDTTGFKQQL 133
Query: 297 TSLWFDLYGRGGTSH-SSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGY 356
+WF+LY R G+S SS FEHVFVGE + GG V GFHNW+Q YL+E G +DY+GY
Sbjct: 134 YKIWFELYARKGSSKPDSSGFEHVFVGETR--GGHTVIGFHNWIQLYLQEKLGHIDYKGY 193
Query: 357 IFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLG-GEDNHV 416
Q PD +L +QF W +K S +GVSPEFE +LYTLCF + E V
Sbjct: 194 SVNANSPQ-PDENKHMLALQFSWKNGIKPKGSIFIGVSPEFEFSLYTLCFLMSPNERVKV 253
Query: 417 ELGPYPVNIKCYRLGNK-IGSVFPV 435
Y V I C+ K IG+ +PV
Sbjct: 254 SFNLYDVEIVCHHYNQKHIGTTYPV 275
BLAST of CmoCh06G008530 vs. ExPASy Swiss-Prot
Match:
B1WBB4 (Poly(U)-specific endoribonuclease-B OS=Xenopus laevis OX=8355 GN=endou-b PE=2 SV=1)
HSP 1 Score: 206.8 bits (525), Expect = 4.8e-52
Identity = 114/275 (41.45%), Postives = 157/275 (57.09%), Query Frame = 0
Query: 170 DFARACNKLWELDLNRLVPGQDYEIDCGEGK------RVHGREDMAQASLFSWVSEDVFR 229
+ ++ N+LW+ D+NR+ G+DY I +GK R + +D A LF +V E+ +
Sbjct: 11 ELSKLFNELWDADVNRMKAGKDYRISL-QGKAGYVPARSNQAKDSASYPLFQFVDEEKLK 70
Query: 230 -KPTFSRFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTS 289
K TF+ F SLLDNY D G EVVTPEE E F++ I T +K H YL K
Sbjct: 71 SKKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 130
Query: 290 NDYQDFKRMLTSLWFDLYGRG-GTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEE 349
DFK L S+WF LY R G+ S FEHVFVGE K+ G+E+ G HNW+QFYL+E
Sbjct: 131 PSQNDFKVQLYSIWFQLYSRAPGSRPDSCGFEHVFVGESKR--GKEMMGLHNWVQFYLQE 190
Query: 350 AKGSVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCF 409
+ ++DY+GY+ R+ PD + Q+L +QF W ++K V S+ +GVSPEFE ALYT+ F
Sbjct: 191 KRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFSWKEMVKPVGSSFIGVSPEFEFALYTIVF 250
Query: 410 FLGG---EDNHVELGPYPVNIKCYRLGNKIGSVFP 434
+ L Y + I R G IG+ +P
Sbjct: 251 LASQAKMSREVIRLEEYELQIVVNRHGRYIGTAYP 281
BLAST of CmoCh06G008530 vs. ExPASy Swiss-Prot
Match:
Q8JFY9 (Poly(U)-specific endoribonuclease-A OS=Xenopus laevis OX=8355 GN=endou-a PE=1 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 1.1e-51
Identity = 115/276 (41.67%), Postives = 156/276 (56.52%), Query Frame = 0
Query: 170 DFARACNKLWELDLNRLVPGQDYEIDCGEGKR------VHGREDMAQASLFSWVSEDVFR 229
+ ++ N+LW+ D NR+ G+DY I +GK + D A LF +V E+ +
Sbjct: 11 ELSKLFNELWDADQNRMKSGKDYRISL-QGKAGYVPAGSNQARDSASFPLFQFVDEEKLK 70
Query: 230 -KPTFSRFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTS 289
+ TF+ F SLLDNY D G EVVTPEE E F++ I T +K H YL K
Sbjct: 71 SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNNFLDAILETKVMKMAHDYLVRKNQAK 130
Query: 290 NDYQDFKRMLTSLWFDLYGRG-GTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEE 349
DFK L ++WF LY R G+ S FEHVFVGE K+ GQE+ G HNW+QFYL+E
Sbjct: 131 PTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHVFVGESKR--GQEMMGLHNWVQFYLQE 190
Query: 350 AKGSVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCF 409
+ ++DY+GY+ R+ PD + Q+L +QF W ++K V S+ +GVSPEFE ALYT+ F
Sbjct: 191 KRKNIDYKGYV-ARQNKSRPDEDDQVLNLQFNWKEMVKPVGSSFIGVSPEFEFALYTIVF 250
Query: 410 FLGGED---NHVELGPYPVNIKCYRLGNKIGSVFPV 435
E V L Y + I R G IG+ +PV
Sbjct: 251 LASQEKMSREVVRLEEYELQIVVNRHGRYIGTAYPV 282
BLAST of CmoCh06G008530 vs. ExPASy Swiss-Prot
Match:
B1H3D5 (Poly(U)-specific endoribonuclease OS=Xenopus tropicalis OX=8364 GN=endou PE=2 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 2.4e-51
Identity = 113/276 (40.94%), Postives = 155/276 (56.16%), Query Frame = 0
Query: 170 DFARACNKLWELDLNRLVPGQDYEIDCGEGKR------VHGREDMAQASLFSWVSEDVFR 229
+ ++ N+LW+ D NR+ G+DY I +GK + D A LF +V E+ R
Sbjct: 12 ELSKLFNELWDADENRMKAGKDYRISL-QGKAGYVPAGSNQARDSASYPLFQFVDEEKLR 71
Query: 230 -KPTFSRFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTS 289
+ TF+ F SLLDNY D G EVVTPEE E F++ I T +K H YL K
Sbjct: 72 SRKTFATFISLLDNYEMDTGVAEVVTPEEIAENNTFLDAILETKVMKIAHDYLVRKNQAK 131
Query: 290 NDYQDFKRMLTSLWFDLYGRG-GTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEE 349
DFK L ++WF LY R G S FEHVFVGE K+ G+E+ G HNW+QFYL+E
Sbjct: 132 PSRNDFKAQLYTIWFQLYSRAPGQGPDSCGFEHVFVGESKR--GKEIMGLHNWVQFYLQE 191
Query: 350 AKGSVDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCF 409
+ ++DY+GY+ R+ PD + Q+L +QF W ++K + S+ +GVSPEFE ALYT+ F
Sbjct: 192 KRKTIDYKGYV-GRQNKSRPDHDDQVLNLQFSWKEMVKPIGSSFIGVSPEFEFALYTVVF 251
Query: 410 FLGGED---NHVELGPYPVNIKCYRLGNKIGSVFPV 435
E V + Y + I R G IG+ +PV
Sbjct: 252 LTSQEKMTREVVRVEEYEMQIVVNRHGRYIGTAYPV 283
BLAST of CmoCh06G008530 vs. ExPASy Swiss-Prot
Match:
Q1LUM3 (Poly(U)-specific endoribonuclease-C OS=Danio rerio OX=7955 GN=endouc PE=2 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 6.1e-47
Identity = 111/271 (40.96%), Postives = 155/271 (57.20%), Query Frame = 0
Query: 176 NKLWELDLNRLVPGQDYEIDCGEGKRVHGRE------DMAQASLFSWVSEDVFRK-PTFS 235
N+LW+LD+NR+ P +Y I +GK + + D A + LF V E T++
Sbjct: 36 NELWKLDVNRMEPLTNYNISL-QGKAGYIPQGSTNVVDHASSPLFVNVDEAKLSSITTYA 95
Query: 236 RFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDF 295
RF LLDNY G E VT EE E +F++ I TA +K H+YL KG + +D + F
Sbjct: 96 RFMKLLDNYERSTGVAERVTAEEVTENNSFLDAILETAVMKRAHQYLIGKGKSRSDLRQF 155
Query: 296 KRMLTSLWFDLYGR---GGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGS 355
K L +WF LY R GG SS FEHVFVGE K G+E+ G HNW+QFYL+E +
Sbjct: 156 KSQLYYMWFRLYHRERNGG--EDSSGFEHVFVGETK--FGREIMGLHNWVQFYLQEKQNL 215
Query: 356 VDYQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGG 415
+DY+GY R PD++ +L +QF W+G++K V+S VGVSPEFE+A++T+ F
Sbjct: 216 LDYKGY--KARANDVPDADDHVLNVQFSWHGLVKPVASAFVGVSPEFEMAVFTILFLTST 275
Query: 416 EDNH---VELGPYPVNIKCYRLGNKIGSVFP 434
E V L Y + + +R G IG+ +P
Sbjct: 276 EKTTTAVVNLDEYQLEMVVHRHGRCIGTAYP 299
BLAST of CmoCh06G008530 vs. ExPASy TrEMBL
Match:
A0A6J1F7L9 (poly(U)-specific endoribonuclease-B-like OS=Cucurbita moschata OX=3662 GN=LOC111443088 PE=3 SV=1)
HSP 1 Score: 890.2 bits (2299), Expect = 3.5e-255
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH 60
MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH
Sbjct: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH 60
Query: 61 GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW 120
GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW
Sbjct: 61 GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW 120
Query: 121 ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE 180
ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE
Sbjct: 121 ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE 180
Query: 181 LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD 240
LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD
Sbjct: 181 LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD 240
Query: 241 QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY 300
QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY
Sbjct: 241 QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY 300
Query: 301 GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF 360
GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF
Sbjct: 301 GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF 360
Query: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK 420
PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK
Sbjct: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK 420
Query: 421 CYRLGNKIGSVFPVAES 438
CYRLGNKIGSVFPVAES
Sbjct: 421 CYRLGNKIGSVFPVAES 437
BLAST of CmoCh06G008530 vs. ExPASy TrEMBL
Match:
A0A6J1L240 (poly(U)-specific endoribonuclease-B-like OS=Cucurbita maxima OX=3661 GN=LOC111498407 PE=3 SV=1)
HSP 1 Score: 862.1 bits (2226), Expect = 1.0e-246
Identity = 426/440 (96.82%), Postives = 432/440 (98.18%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKN--NEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDR 60
MEGLIKGLIDVAIGHDDD N NEQSA QSRDERSRSTWAQVVTGEEDAD+DGGDRGHDR
Sbjct: 1 MEGLIKGLIDVAIGHDDDNNNSNEQSAPQSRDERSRSTWAQVVTGEEDADQDGGDRGHDR 60
Query: 61 RHGNDWNRRDNEKEGRSRR-EEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENN 120
RHGNDWNRRDN K+GRSRR EEWEV+GSRISGQ+QQGEYGSEHGYNRDQWAKKESSEENN
Sbjct: 61 RHGNDWNRRDNVKQGRSRREEEWEVEGSRISGQRQQGEYGSEHGYNRDQWAKKESSEENN 120
Query: 121 DGWETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNK 180
DGWETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNK
Sbjct: 121 DGWETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNK 180
Query: 181 LWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNY 240
LWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWV+EDVFRKPTFSRFCSLLDNY
Sbjct: 181 LWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVNEDVFRKPTFSRFCSLLDNY 240
Query: 241 NPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWF 300
NPDQGSKEVVTPEE+QEQAAFIEEISRTAPIKYLHKYL YKGV SNDYQDFKRMLTSLWF
Sbjct: 241 NPDQGSKEVVTPEERQEQAAFIEEISRTAPIKYLHKYLLYKGVASNDYQDFKRMLTSLWF 300
Query: 301 DLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRR 360
DLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRR
Sbjct: 301 DLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRR 360
Query: 361 GQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPV 420
GQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPV
Sbjct: 361 GQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPV 420
Query: 421 NIKCYRLGNKIGSVFPVAES 438
NIKCYRLGNKIGSVFPVAES
Sbjct: 421 NIKCYRLGNKIGSVFPVAES 440
BLAST of CmoCh06G008530 vs. ExPASy TrEMBL
Match:
A0A6J1DMN3 (poly(U)-specific endoribonuclease-B-like OS=Momordica charantia OX=3673 GN=LOC111022649 PE=3 SV=1)
HSP 1 Score: 753.1 bits (1943), Expect = 6.7e-214
Identity = 369/437 (84.44%), Postives = 402/437 (91.99%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH 60
MEGLIKG++D+A+GHDD++ +E+SA QSRDERSRSTWAQVV+GEEDA DRR
Sbjct: 1 MEGLIKGVLDIALGHDDNR-DEESAPQSRDERSRSTWAQVVSGEEDAG--------DRRQ 60
Query: 61 GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW 120
G NRRD+E+EGRSRR+EWEV+GSRISGQ+QQGEY SEHG+NR+ WA +E SEE NDGW
Sbjct: 61 GYAPNRRDDEEEGRSRRQEWEVEGSRISGQRQQGEYRSEHGHNRNHWATEEGSEEKNDGW 120
Query: 121 ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE 180
ETVHKK PR+ HKVQ++NW GYKRP SEQNYSDEVEVGAELEPSEDELAD +RACNKLWE
Sbjct: 121 ETVHKKPPRRKHKVQIDNWGGYKRPPSEQNYSDEVEVGAELEPSEDELADLSRACNKLWE 180
Query: 181 LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD 240
LDLNRLVPG+DYEIDCGEGKRV GREDMA+ LFSWVSED FRKPTFSRFCSLLDNYNPD
Sbjct: 181 LDLNRLVPGKDYEIDCGEGKRVSGREDMAEGCLFSWVSEDAFRKPTFSRFCSLLDNYNPD 240
Query: 241 QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY 300
QGS+E+VT EE+QEQAAF+EEISRTAPIKYLHKYLS GVT NDYQDFKR+LTSLWFDLY
Sbjct: 241 QGSREIVTAEERQEQAAFVEEISRTAPIKYLHKYLSSNGVTPNDYQDFKRLLTSLWFDLY 300
Query: 301 GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF 360
GRGGTS SSSAFEHVFVGEIKQ+G QEVSGFHNWLQFYLEEAKG+VDYQGYIFPRRRGQF
Sbjct: 301 GRGGTSGSSSAFEHVFVGEIKQRGQQEVSGFHNWLQFYLEEAKGAVDYQGYIFPRRRGQF 360
Query: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK 420
PDSETQLLTIQFEWNG+LKSVSSTL+GVSPEFELALYTLCFFLGGEDNHVELGPYP+NIK
Sbjct: 361 PDSETQLLTIQFEWNGILKSVSSTLIGVSPEFELALYTLCFFLGGEDNHVELGPYPINIK 420
Query: 421 CYRLGNKIGSVFPVAES 438
CYRLGNKIGSVFPVAES
Sbjct: 421 CYRLGNKIGSVFPVAES 428
BLAST of CmoCh06G008530 vs. ExPASy TrEMBL
Match:
A0A0A0L6P1 (XendoU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017000 PE=3 SV=1)
HSP 1 Score: 752.7 bits (1942), Expect = 8.8e-214
Identity = 375/436 (86.01%), Postives = 399/436 (91.51%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH 60
MEGLIKGLIDVAIG+D D N++QS SQSR++RSRSTWAQVVTGEED G DRR
Sbjct: 1 MEGLIKGLIDVAIGNDGDNNDQQSPSQSREDRSRSTWAQVVTGEED--------GGDRRD 60
Query: 61 GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW 120
G NRR+NE+EGRSRREEWEV+ SRISGQ++Q EYGSEHGYNR+QWAK+ESSEE NDGW
Sbjct: 61 GYHRNRRNNEEEGRSRREEWEVEDSRISGQRKQSEYGSEHGYNRNQWAKEESSEEKNDGW 120
Query: 121 ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE 180
ETVHKK R+ HKVQ +NW GYKRPASEQNYSDEVEVGAELEPSEDELAD + ACNKLW+
Sbjct: 121 ETVHKKPTRRQHKVQTDNWGGYKRPASEQNYSDEVEVGAELEPSEDELADLSYACNKLWK 180
Query: 181 LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD 240
LDLNRLVPG+DYEIDCGEGKRV GREDMAQ SLFSWVSE+V RKPTFSRFCSLLDNYNP+
Sbjct: 181 LDLNRLVPGKDYEIDCGEGKRVSGREDMAQGSLFSWVSEEVLRKPTFSRFCSLLDNYNPN 240
Query: 241 QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY 300
QGSKEVVTPEE+QEQAAFIEEISRTAPIKYLHKYLS KGV SN+YQDFKRMLTSLWFDLY
Sbjct: 241 QGSKEVVTPEERQEQAAFIEEISRTAPIKYLHKYLSSKGVASNEYQDFKRMLTSLWFDLY 300
Query: 301 GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF 360
GRGGT SSSAFEHVFVGEIKQQG QEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQ
Sbjct: 301 GRGGTCGSSSAFEHVFVGEIKQQGEQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQC 360
Query: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK 420
PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFE+ALYTLCFFLGGEDNHVELGPY VNIK
Sbjct: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFEVALYTLCFFLGGEDNHVELGPYAVNIK 420
Query: 421 CYRLGNKIGSVFPVAE 437
CYR GNK+GSVFP+AE
Sbjct: 421 CYRFGNKMGSVFPIAE 428
BLAST of CmoCh06G008530 vs. ExPASy TrEMBL
Match:
A0A1S3BLB7 (poly(U)-specific endoribonuclease-B OS=Cucumis melo OX=3656 GN=LOC103490825 PE=3 SV=1)
HSP 1 Score: 744.2 bits (1920), Expect = 3.1e-211
Identity = 372/436 (85.32%), Postives = 396/436 (90.83%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRSTWAQVVTGEEDADRDGGDRGHDRRH 60
MEGLIKGLIDVAIG+D D N++QSASQSR+ERSRSTWAQVVTGEED G DRR
Sbjct: 1 MEGLIKGLIDVAIGNDGDNNDQQSASQSREERSRSTWAQVVTGEED--------GGDRRD 60
Query: 61 GNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQGEYGSEHGYNRDQWAKKESSEENNDGW 120
G D NR +NE+EGRSRREEWEV+ SRISGQ++Q EYGSEHGYNR+QWAK+E SEE NDGW
Sbjct: 61 GCDRNRWNNEEEGRSRREEWEVEDSRISGQRKQSEYGSEHGYNRNQWAKEEGSEEKNDGW 120
Query: 121 ETVHKKAPRKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADFARACNKLWE 180
ETVHKK R+ HK+Q +NW GYKRPASEQNYS+EVEVGAELEPSEDELAD + AC KLW+
Sbjct: 121 ETVHKKPTRRQHKIQTDNWGGYKRPASEQNYSNEVEVGAELEPSEDELADLSYACKKLWQ 180
Query: 181 LDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFCSLLDNYNPD 240
LDLNRLVPG+DYEIDCGEGKRV GREDMAQ SLFSWVSEDVF KPTFSRFCSLLDNYNP+
Sbjct: 181 LDLNRLVPGKDYEIDCGEGKRVSGREDMAQGSLFSWVSEDVFGKPTFSRFCSLLDNYNPN 240
Query: 241 QGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRMLTSLWFDLY 300
QG KEVVTPEE+QEQAAFIEEISRTAPIKYLH+YLS KGV SNDYQDFKRMLTSLWFDL
Sbjct: 241 QGCKEVVTPEERQEQAAFIEEISRTAPIKYLHRYLSSKGVASNDYQDFKRMLTSLWFDLC 300
Query: 301 GRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQF 360
GR GTS SSSAFEHVFVGEIKQQG QEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQ
Sbjct: 301 GRCGTSGSSSAFEHVFVGEIKQQGEQEVSGFHNWLQFYLEEAKGSVDYQGYIFPRRRGQC 360
Query: 361 PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVELGPYPVNIK 420
PDSETQLLTIQFEWNG+LKSVSSTLVGVSPEFE+ALYTLCFFLGGEDNHVELGPY VNIK
Sbjct: 361 PDSETQLLTIQFEWNGILKSVSSTLVGVSPEFEVALYTLCFFLGGEDNHVELGPYAVNIK 420
Query: 421 CYRLGNKIGSVFPVAE 437
CYRLGN IGSVFP+AE
Sbjct: 421 CYRLGNNIGSVFPIAE 428
BLAST of CmoCh06G008530 vs. TAIR 10
Match:
AT4G17100.1 (CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). )
HSP 1 Score: 579.3 bits (1492), Expect = 2.6e-165
Identity = 300/447 (67.11%), Postives = 346/447 (77.40%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSA---SQSRDERSRSTWAQVVTGEEDADRDGGDRGHD 60
M+GLI+GL+DVAIG + + + SRDERSRSTWA VV+GEE+ G H
Sbjct: 1 MDGLIRGLVDVAIGGNQRRGGDDGGDDEGNSRDERSRSTWANVVSGEEEDQNRAGGSSHG 60
Query: 61 RRHGNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQG--EYGSEHGYNRDQWAKK---ES 120
RR ++ N +WE +G R+ + Q E E+ Y K+ ES
Sbjct: 61 RRQNSEEN-------------QWEKKGERLPTRHSQSHEEDQEENTYAAKVSEKQDFSES 120
Query: 121 SEENNDGWETVHKKAP-RKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDELADF 180
+E NDGWETV KK P R+ HKVQ E W+ YKRPASEQ+YSDEVE LEPS+ EL+
Sbjct: 121 QQEENDGWETVGKKKPARQSHKVQKEQWQDYKRPASEQHYSDEVETYGNLEPSQLELSGL 180
Query: 181 ARACNKLWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTFSRFC 240
+ ACNKLWELDLNRLVPG+DY+IDCG+GKRVH R DMA+ LFSWVSE+V RKPTF+RFC
Sbjct: 181 SEACNKLWELDLNRLVPGRDYQIDCGDGKRVHERADMAEGLLFSWVSEEVSRKPTFARFC 240
Query: 241 SLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQDFKRM 300
SLLDNYNP++G KEVVT EE+QEQAAFIEEISRT+ IKYLH+YL K V Y +FKRM
Sbjct: 241 SLLDNYNPNEGYKEVVTEEERQEQAAFIEEISRTSVIKYLHRYLVLKDVAPGSYLEFKRM 300
Query: 301 LTSLWFDLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVDYQGY 360
LTSLWFDLYGRGGTS SSSAFEHVFVGEIKQ GG++VSGFHNWLQFYLEEAKG+VDYQGY
Sbjct: 301 LTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQSGGEQVSGFHNWLQFYLEEAKGTVDYQGY 360
Query: 361 IFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGEDNHVE 420
IFPRRRG+ PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYT+CFF+G EDNH++
Sbjct: 361 IFPRRRGEIPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTMCFFMGTEDNHIQ 420
Query: 421 LGPYPVNIKCYRLG-NKIGSVFPVAES 438
LGPY VN+KCYRLG N+IGS FP+AES
Sbjct: 421 LGPYNVNVKCYRLGNNRIGSAFPIAES 434
BLAST of CmoCh06G008530 vs. TAIR 10
Match:
AT4G17100.2 (EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). )
HSP 1 Score: 541.6 bits (1394), Expect = 5.9e-154
Identity = 288/451 (63.86%), Postives = 336/451 (74.50%), Query Frame = 0
Query: 1 MEGLIKGLIDVAIGHDDDKNNEQSASQSRDERSRST-------WAQVVTGEEDADRDGGD 60
M+GLI+GL+D + ++ N + +R T VV+GEE+ G
Sbjct: 1 MDGLIRGLVD-STWLSEETNAAAETMVVMMKATRGTRDPDLLGLMFVVSGEEEDQNRAGG 60
Query: 61 RGHDRRHGNDWNRRDNEKEGRSRREEWEVQGSRISGQQQQG--EYGSEHGYNRDQWAKK- 120
H RR ++ N +WE +G R+ + Q E E+ Y K+
Sbjct: 61 SSHGRRQNSEEN-------------QWEKKGERLPTRHSQSHEEDQEENTYAAKVSEKQD 120
Query: 121 --ESSEENNDGWETVHKKAP-RKHHKVQVENWEGYKRPASEQNYSDEVEVGAELEPSEDE 180
ES +E NDGWETV KK P R+ HKVQ E W+ YKRPASEQ+YSDEVE LEPS+ E
Sbjct: 121 FSESQQEENDGWETVGKKKPARQSHKVQKEQWQDYKRPASEQHYSDEVETYGNLEPSQLE 180
Query: 181 LADFARACNKLWELDLNRLVPGQDYEIDCGEGKRVHGREDMAQASLFSWVSEDVFRKPTF 240
L+ + ACNKLWELDLNRLVPG+DY+IDCG+GKRVH R DMA+ LFSWVSE+V RKPTF
Sbjct: 181 LSGLSEACNKLWELDLNRLVPGRDYQIDCGDGKRVHERADMAEGLLFSWVSEEVSRKPTF 240
Query: 241 SRFCSLLDNYNPDQGSKEVVTPEEKQEQAAFIEEISRTAPIKYLHKYLSYKGVTSNDYQD 300
+RFCSLLDNYNP++G KEVVT EE+QEQAAFIEEISRT+ IKYLH+YL K V Y +
Sbjct: 241 ARFCSLLDNYNPNEGYKEVVTEEERQEQAAFIEEISRTSVIKYLHRYLVLKDVAPGSYLE 300
Query: 301 FKRMLTSLWFDLYGRGGTSHSSSAFEHVFVGEIKQQGGQEVSGFHNWLQFYLEEAKGSVD 360
FKRMLTSLWFDLYGRGGTS SSSAFEHVFVGEIKQ GG++VSGFHNWLQFYLEEAKG+VD
Sbjct: 301 FKRMLTSLWFDLYGRGGTSGSSSAFEHVFVGEIKQSGGEQVSGFHNWLQFYLEEAKGTVD 360
Query: 361 YQGYIFPRRRGQFPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTLCFFLGGED 420
YQGYIFPRRRG+ PDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYT+CFF+G ED
Sbjct: 361 YQGYIFPRRRGEIPDSETQLLTIQFEWNGVLKSVSSTLVGVSPEFELALYTMCFFMGTED 420
Query: 421 NHVELGPYPVNIKCYRLG-NKIGSVFPVAES 438
NH++LGPY VN+KCYRLG N+IGS FP+AES
Sbjct: 421 NHIQLGPYNVNVKCYRLGNNRIGSAFPIAES 437
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q503V9 | 6.5e-57 | 44.91 | Poly(U)-specific endoribonuclease-B OS=Danio rerio OX=7955 GN=endoub PE=2 SV=1 | [more] |
B1WBB4 | 4.8e-52 | 41.45 | Poly(U)-specific endoribonuclease-B OS=Xenopus laevis OX=8355 GN=endou-b PE=2 SV... | [more] |
Q8JFY9 | 1.1e-51 | 41.67 | Poly(U)-specific endoribonuclease-A OS=Xenopus laevis OX=8355 GN=endou-a PE=1 SV... | [more] |
B1H3D5 | 2.4e-51 | 40.94 | Poly(U)-specific endoribonuclease OS=Xenopus tropicalis OX=8364 GN=endou PE=2 SV... | [more] |
Q1LUM3 | 6.1e-47 | 40.96 | Poly(U)-specific endoribonuclease-C OS=Danio rerio OX=7955 GN=endouc PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1F7L9 | 3.5e-255 | 100.00 | poly(U)-specific endoribonuclease-B-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
A0A6J1L240 | 1.0e-246 | 96.82 | poly(U)-specific endoribonuclease-B-like OS=Cucurbita maxima OX=3661 GN=LOC11149... | [more] |
A0A6J1DMN3 | 6.7e-214 | 84.44 | poly(U)-specific endoribonuclease-B-like OS=Momordica charantia OX=3673 GN=LOC11... | [more] |
A0A0A0L6P1 | 8.8e-214 | 86.01 | XendoU domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G017000 PE=3... | [more] |
A0A1S3BLB7 | 3.1e-211 | 85.32 | poly(U)-specific endoribonuclease-B OS=Cucumis melo OX=3656 GN=LOC103490825 PE=3... | [more] |
Match Name | E-value | Identity | Description | |
AT4G17100.1 | 2.6e-165 | 67.11 | CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 94... | [more] |
AT4G17100.2 | 5.9e-154 | 63.86 | EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS ... | [more] |