CmoCh06G008000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G008000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	small heat shock protein, chloroplastic-like
Location	Cmo_Chr06: 4285176 .. 4287336 (-)
RNA-Seq Expression	CmoCh06G008000
Synteny	CmoCh06G008000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGATTCCAGAAACCCCGCCTTTTGCAAGAACCTCCATTACTAGAACCTTCTTTCCCCTTCTCGACGATTCTTCTTCTTCAATAAAACCCCAATTCCTCTTCTCCAGAACCTCAGATTCTTGGAAGAATTGATCTAAGTGCTCTCTTAGCTCTCCGCATTTTAAGCATTCTAAAAATCTCCATCAATGGCTTCTTCAATTGCTCTCCGAAGGCTGGCCGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCTTCTGTCCTTCCTTCTGTCGGTCGTTCTTTCAACACTAACGCTCAGATTGCTAGTTACGACGACGAAGACCGCTCCGTCGATTTGGACAGCCGCCGGAGCGGTTCTCTCTCTCGTTATCGTGATCGCTTCCCTGGTTTTGCAGGTTGTTGTTTCTTTGTTCCTTTGATTTATTGATTGATTTTTCTGGAATTTTGAACTAGGTTGCCATGTGATTAGTTGTTTGTTTCTTTGTAATTTTGTTTTGATTTGTTGAAATGGATCTGCGCAATGACTGGCGGTATTGAATGTTGAAGTTATATGACGCGCATTACTGAATCGCCCTGATCGGTTTTGTTAGCGAGAGATTTTGCTTGCTTGTCTAGTTTTGATCACGCTCCTTGACAAATCGCGGCATGGAATCATCTGAGAGTGGTTACTGTTATTCTTTTAGTGGAAACTTTGCTTGTTTGTTCGTGTTGTATATCGATCTTGTTGCCATTGAATCATTGGAAGTGGTGTTTCAATAAGAAGTCCTACTCGCTTATTGATTGAGAAATATCGGCATAAAACCATGTGAAATTAGTTGTGTTTGAACGAGAAAGTCCATTGTTGCACTCCAATTCTTGTTTGCTTGTTCAGCACGAATCTTAATCTGTTCACACACTTTGGACAATGTTGTCAATAAACTTTAAGTTCGTAAGAAATCATGCTTGCTTGTTTGCTGATGGTGGATCGATCACTACCTCAATGCACTTCAATTTCCATGTGACAGATGTGTGCGATCATTTTTCGCTGAACCGGAGCCTGAGTCAGGTCCTGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAAACGAGGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGCGTGGAGCAGAACACACTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAATACGAGGAGGACCGTCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGATGTGAAGCATGTTACAGTCGAGTAGTTGGGTCTAAAACTAAAAGAAAAAGCTCTGTAGCTTTTAGAGTCGATTATGGAGTTCTCTTCTCCTTTTGCTGTGGTCTCTGTTTCATGGAGATGTTTGCGAACATTGTCGTGCTGTTTTGAAGATTCCCATGTATGTGATTTCAACGGAGTTTCGCCCCTCATTTGGTGATGGAATCTAAGGAATAAGCAGCTTTACATAGTCAAAGTTTCCATCATGTTGGTGCCTCTTCTCTTCTGCGTTCTTCATCCCATCATGTGAGTCTGCATTTACTTTTGAGAACTTAATTCATTAATCCATCAGCACTCTCACTTACATTCGAGATCTATCGGGTTTGGTGCTGTTCTGTTGCCTTATCGATCACTTTCGTTCGAGTTAACTTATGAGTTAGGGCCTGAATTTTTGAAGTACTGACCTATGAATGAATCCCCACAAGTTCCTTAAAGAAATTCACAAGAGATTCGGGCGGGATCGGATTAACAATGGTACACAGGTATTTTATGTCTACTTTTAAGCATAGTTGATTCTGACAAGAAATTACAAAAAGACTATATATCGAAACCAGGATTGGAGTTCTACAACGTTAGTGAAGGAATTTAGTTATGAGTTATTAACAAACTAAGTTATGAGTTATGAGTTGTGAACAAGTAAAAATGTAAATAATCAGGAAAAAATTAGGAAATCTAGAAATTCCATTGCATCTAAAAAAGAATAGGGACACGTGTAGTG

mRNA sequence

GCAAGATTCCAGAAACCCCGCCTTTTGCAAGAACCTCCATTACTAGAACCTTCTTTCCCCTTCTCGACGATTCTTCTTCTTCAATAAAACCCCAATTCCTCTTCTCCAGAACCTCAGATTCTTGGAAGAATTGATCTAAGTGCTCTCTTAGCTCTCCGCATTTTAAGCATTCTAAAAATCTCCATCAATGGCTTCTTCAATTGCTCTCCGAAGGCTGGCCGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCTTCTGTCCTTCCTTCTGTCGGTCGTTCTTTCAACACTAACGCTCAGATTGCTAGTTACGACGACGAAGACCGCTCCGTCGATTTGGACAGCCGCCGGAGCGGTTCTCTCTCTCGTTATCGTGATCGCTTCCCTGGTTTTGCAGATGTGTGCGATCATTTTTCGCTGAACCGGAGCCTGAGTCAGGTCCTGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAAACGAGGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGCGTGGAGCAGAACACACTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAATACGAGGAGGACCGTCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGATGTGAAGCATGTTACAGTCGAGTAGTTGGGTCTAAAACTAAAAGAAAAAGCTCTGTAGCTTTTAGAGTCGATTATGGAGTTCTCTTCTCCTTTTGCTGTGGTCTCTGTTTCATGGAGATGTTTGCGAACATTGTCGTGCTGTTTTGAAGATTCCCATGTATGTGATTTCAACGGAGTTTCGCCCCTCATTTGGTGATGGAATCTAAGGAATAAGCAGCTTTACATAGTCAAAGTTTCCATCATGTTGGTGCCTCTTCTCTTCTGCGTTCTTCATCCCATCATGTGAGTCTGCATTTACTTTTGAGAACTTAATTCATTAATCCATCAGCACTCTCACTTACATTCGAGATCTATCGGGTTTGGTGCTGTTCTGTTGCCTTATCGATCACTTTCGTTCGAGTTAACTTATGAGTTAGGGCCTGAATTTTTGAAGTACTGACCTATGAATGAATCCCCACAAGTTCCTTAAAGAAATTCACAAGAGATTCGGGCGGGATCGGATTAACAATGGTACACAGGTATTTTATGTCTACTTTTAAGCATAGTTGATTCTGACAAGAAATTACAAAAAGACTATATATCGAAACCAGGATTGGAGTTCTACAACGTTAGTGAAGGAATTTAGTTATGAGTTATTAACAAACTAAGTTATGAGTTATGAGTTGTGAACAAGTAAAAATGTAAATAATCAGGAAAAAATTAGGAAATCTAGAAATTCCATTGCATCTAAAAAAGAATAGGGACACGTGTAGTG

Coding sequence (CDS)

ATGGCTTCTTCAATTGCTCTCCGAAGGCTGGCCGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCTTCTGTCCTTCCTTCTGTCGGTCGTTCTTTCAACACTAACGCTCAGATTGCTAGTTACGACGACGAAGACCGCTCCGTCGATTTGGACAGCCGCCGGAGCGGTTCTCTCTCTCGTTATCGTGATCGCTTCCCTGGTTTTGCAGATGTGTGCGATCATTTTTCGCTGAACCGGAGCCTGAGTCAGGTCCTGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAAACGAGGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGCGTGGAGCAGAACACACTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAATACGAGGAGGACCGTCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGATGTGAAGCATGTTACAGTCGAGTAG

Protein sequence

MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGSLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE

Homology

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BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot
Match: P11890 (Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.2e-53
Identity = 121/213 (56.81%), Postives = 155/213 (72.77%), Query Frame = 0


Query: 3   SSIALRRLAASS--AAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 62
           +S+ALRRLA+ +  +  +F P+       SV RSFNTNAQ+   D +    +LD R + +
Sbjct: 2   ASMALRRLASRNLVSGGIFRPL-------SVSRSFNTNAQMGRVDHDH---ELDDRSNRA 61

Query: 63  LSRYRDRFPG--FADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRE 122
               R  FP   F+DV D F   RS+ Q++NLMDQ ME+P +AASRG G   RRGWDVRE
Sbjct: 62  PISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVRE 121

Query: 123 NEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQL 182
           +E+AL L++DMPGL+KEDVKVSVE NTLIIK EA KE+E EE RRR+SSR++L  NLY++
Sbjct: 122 DEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKI 181

Query: 183 DSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           D IKAEMKNGVLK++VPK+KEEE+KDV  V V+
Sbjct: 182 DGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204

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BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot
Match: Q96331 (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 121/217 (55.76%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVL-PSV-GRSFNTNAQIASYDDEDRSVDLDSRRS 60
           MAS++AL+RL +SS A      RS SVL P+V  R FNTNA + SYDD+  + D      
Sbjct: 1   MASALALKRLLSSSIAP-----RSRSVLRPAVSSRLFNTNA-VRSYDDDGENGDGVDLYR 60

Query: 61  GSLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGA-GSRRGWDVR 120
            S+ R R  F  F+DV D FS  RS+SQVLNLMDQFME+P+L+A+RG+GA G+RRGWD++
Sbjct: 61  RSVPRRRGDF--FSDVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIK 120

Query: 121 ENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE----SEYEEDRRRFSSRLDLPD 180
           E +DALYLR+DMPGLS+EDVK+++EQ+TL+I+GE   E     E E   RRF+SR+ LPD
Sbjct: 121 EKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPD 180

Query: 181 NLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTV 211
            +Y++D IKAEMKNGVLK+ +PK+KE+ER DV+ + +
Sbjct: 181 KIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEI 209

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BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot
Match: P46254 (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.3e-46
Identity = 121/215 (56.28%), Postives = 151/215 (70.23%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYD--DEDRSVDLDSRRS 60
           MASS+AL+R  +S    L S      V  S  RSFNTNA +  YD   +DR+VD+  R S
Sbjct: 1   MASSLALKRFLSSG---LLSSSFLRPVASSASRSFNTNA-MRQYDQHSDDRNVDV-YRHS 60

Query: 61  GSLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRE 120
              +R  D     +DV D FS  RSLSQVLN++D   ++P+L+A+      SRRGWD RE
Sbjct: 61  FPRTRRDDLL--LSDVFDPFSPPRSLSQVLNMVDLLTDNPVLSAA------SRRGWDARE 120

Query: 121 NEDALYLRMDMPGLSKEDVKVSVEQNTLIIKG-EAAKES-EYEEDRRRFSSRLDLPDNLY 180
            EDAL+LR+DMPGL KEDVK+SVEQNTL IKG E AKES E E+  RRFSSR+DLP+ LY
Sbjct: 121 TEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLY 180

Query: 181 QLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           ++D IKAEMKNGVLK++VPK+KEEER +V +V V+
Sbjct: 181 KIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202

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BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot
Match: Q9FGM9 (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HSP23.5 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.8e-45
Identity = 102/213 (47.89%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 2   ASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGSL 61
           +S++ALRRL +SS   +   +R+   + +  R FNTNA   +Y+D    VD +   +  +
Sbjct: 4   SSALALRRLLSSSTVAVPRALRAVRPVAASSRLFNTNA-ARNYED---GVDRNHHSNRHV 63

Query: 62  SRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGA-GSRRGWDVRENE 121
           SR+   F  F+ + D F+  RSLSQ+LN MDQ  E P+++A+RG+GA G RRGW+V+E +
Sbjct: 64  SRHGGDF--FSHILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKD 123

Query: 122 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE--SEYEEDRRRFSSRLDLPDNLYQL 181
           DAL+LR+DMPGLS+EDVK+++EQNTL+I+GE   E   +   D RRF+SR++LP+ +Y+ 
Sbjct: 124 DALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKT 183

Query: 182 DSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           D IKAEMKNGVLK+ +PK+KE+ER +++H+ V+
Sbjct: 184 DEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210

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BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot
Match: Q39818 (Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.1e-37
Identity = 111/229 (48.47%), Postives = 139/229 (60.70%), Query Frame = 0


Query: 1   MASSIALRRLAASS--AAKLFSPVRSASVLPSVGRSFNTNAQIASYDD--EDRSVDLDSR 60
           MASS+  +R  +SS  +  L  P  SAS      RSF+TNA +  YD+  +D S D+D  
Sbjct: 1   MASSLIAKRFLSSSLLSRSLLRPAASAS-----HRSFDTNA-MRQYDNRADDHSTDID-- 60

Query: 61  RSGSLSRYRDR-FPGFADVCDHFSLNRSLSQVLNLMDQFMED-------------PILAA 120
                 R+ +R FP  A   D F   R +  + +  D   E              P+  A
Sbjct: 61  ------RHSERSFPSTARRDDIFL--RCVGSIFS--DSEFEPGSEHDGPGHGQSVPLRVA 120

Query: 121 SRGVGAGSRRGWDVRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDR 180
                  S RGWD RE EDAL+LR+DMPGL+KEDVK+SVEQNTLIIKGE AKE + EE  
Sbjct: 121 RDRSWRWSGRGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESA 180

Query: 181 RRFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           RR++SR+DLPD LY++D I+AEMKNGVLK+ VPK+KEEERKDV  V VE
Sbjct: 181 RRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211

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BLAST of CmoCh06G008000 vs. ExPASy TrEMBL
Match: A0A6J1FFI7 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443511 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.3e-108
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60
           MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS
Sbjct: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60

Query: 61  LSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENE 120
           LSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENE
Sbjct: 61  LSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENE 120

Query: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDS 180
           DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDS
Sbjct: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDS 180

Query: 181 IKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           IKAEMKNGVLKLSVPKVKEEERKDVKHVTVE
Sbjct: 181 IKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 211

[Close]

BLAST of CmoCh06G008000 vs. ExPASy TrEMBL
Match: A0A6J1FF79 (small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443511 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.5e-106
Identity = 210/212 (99.06%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60
           MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS
Sbjct: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60

Query: 61  LSRYRDRFPGFAD-VCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVREN 120
           LSRYRDRFPGFA  VCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVREN
Sbjct: 61  LSRYRDRFPGFAGYVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVREN 120

Query: 121 EDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLD 180
           EDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLD
Sbjct: 121 EDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLD 180

Query: 181 SIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           SIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE
Sbjct: 181 SIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212

[Close]

BLAST of CmoCh06G008000 vs. ExPASy TrEMBL
Match: A0A6J1KTF5 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498501 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98
Identity = 198/211 (93.84%), Postives = 202/211 (95.73%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60
           MAS IALRRLAASSAAKLFSPVRSASVLPSVGRSFNT+AQIASYDDEDRSVDLDSRRSGS
Sbjct: 1   MASPIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTDAQIASYDDEDRSVDLDSRRSGS 60

Query: 61  LSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENE 120
           LSRYRDRFPGFADV DHFS NRSLSQVLNLMDQ MEDPILAASRGVGAGSRRGWDVRE++
Sbjct: 61  LSRYRDRFPGFADVFDHFSPNRSLSQVLNLMDQVMEDPILAASRGVGAGSRRGWDVREDD 120

Query: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDS 180
           DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE E EEDRRRFSSRLDLPDNLY+LDS
Sbjct: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKEFEDEEDRRRFSSRLDLPDNLYELDS 180

Query: 181 IKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           IKAEMKNGVLKLSVPKVKE ERK VKHV VE
Sbjct: 181 IKAEMKNGVLKLSVPKVKEGERKAVKHVRVE 211

[Close]

BLAST of CmoCh06G008000 vs. ExPASy TrEMBL
Match: A0A6J1KXP6 (small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498501 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.1e-96
Identity = 197/212 (92.92%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60
           MAS IALRRLAASSAAKLFSPVRSASVLPSVGRSFNT+AQIASYDDEDRSVDLDSRRSGS
Sbjct: 1   MASPIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTDAQIASYDDEDRSVDLDSRRSGS 60

Query: 61  LSRYRDRFPGFA-DVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVREN 120
           LSRYRDRFPGFA +V DHFS NRSLSQVLNLMDQ MEDPILAASRGVGAGSRRGWDVRE+
Sbjct: 61  LSRYRDRFPGFAGNVFDHFSPNRSLSQVLNLMDQVMEDPILAASRGVGAGSRRGWDVRED 120

Query: 121 EDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLD 180
           +DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE E EEDRRRFSSRLDLPDNLY+LD
Sbjct: 121 DDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKEFEDEEDRRRFSSRLDLPDNLYELD 180

Query: 181 SIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           SIKAEMKNGVLKLSVPKVKE ERK VKHV VE
Sbjct: 181 SIKAEMKNGVLKLSVPKVKEGERKAVKHVRVE 212

[Close]

BLAST of CmoCh06G008000 vs. ExPASy TrEMBL
Match: A0A6J1E9W1 (small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431197 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.7e-90
Identity = 183/211 (86.73%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGS 60
           MASSIALRRLAA+SAAKLF+PVRSASVLPSVGRSFNTNAQ+ SY+D++RSVD+D R   S
Sbjct: 1   MASSIALRRLAANSAAKLFNPVRSASVLPSVGRSFNTNAQMTSYNDDERSVDVDRRSDRS 60

Query: 61  LSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENE 120
           LSR  DRFPGFADV D FS  RSLSQVLNLMDQFMEDP LAASRGVGAGSRRGWDVRE++
Sbjct: 61  LSRSYDRFPGFADVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDD 120

Query: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDS 180
           DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESE E DRRRFSSRLDLP NLYQLDS
Sbjct: 121 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEDESDRRRFSSRLDLPANLYQLDS 180

Query: 181 IKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           IKAEMKNGVLK++VPKVKEEERKDVK +TVE
Sbjct: 181 IKAEMKNGVLKVAVPKVKEEERKDVKQITVE 211

[Close]

BLAST of CmoCh06G008000 vs. TAIR 10
Match: AT4G25200.1 (mitochondrion-localized small heat shock protein 23.6 )

HSP 1 Score: 204.5 bits (519), Expect = 8.2e-53
Identity = 121/217 (55.76%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVL-PSV-GRSFNTNAQIASYDDEDRSVDLDSRRS 60
           MAS++AL+RL +SS A      RS SVL P+V  R FNTNA + SYDD+  + D      
Sbjct: 1   MASALALKRLLSSSIAP-----RSRSVLRPAVSSRLFNTNA-VRSYDDDGENGDGVDLYR 60

Query: 61  GSLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGA-GSRRGWDVR 120
            S+ R R  F  F+DV D FS  RS+SQVLNLMDQFME+P+L+A+RG+GA G+RRGWD++
Sbjct: 61  RSVPRRRGDF--FSDVFDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIK 120

Query: 121 ENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE----SEYEEDRRRFSSRLDLPD 180
           E +DALYLR+DMPGLS+EDVK+++EQ+TL+I+GE   E     E E   RRF+SR+ LPD
Sbjct: 121 EKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPD 180

Query: 181 NLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTV 211
            +Y++D IKAEMKNGVLK+ +PK+KE+ER DV+ + +
Sbjct: 181 KIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEI 209

[Close]

BLAST of CmoCh06G008000 vs. TAIR 10
Match: AT5G51440.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-46
Identity = 102/213 (47.89%), Postives = 153/213 (71.83%), Query Frame = 0


Query: 2   ASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGSL 61
           +S++ALRRL +SS   +   +R+   + +  R FNTNA   +Y+D    VD +   +  +
Sbjct: 4   SSALALRRLLSSSTVAVPRALRAVRPVAASSRLFNTNA-ARNYED---GVDRNHHSNRHV 63

Query: 62  SRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGA-GSRRGWDVRENE 121
           SR+   F  F+ + D F+  RSLSQ+LN MDQ  E P+++A+RG+GA G RRGW+V+E +
Sbjct: 64  SRHGGDF--FSHILDPFTPTRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKD 123

Query: 122 DALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKE--SEYEEDRRRFSSRLDLPDNLYQL 181
           DAL+LR+DMPGLS+EDVK+++EQNTL+I+GE   E   +   D RRF+SR++LP+ +Y+ 
Sbjct: 124 DALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKT 183

Query: 182 DSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           D IKAEMKNGVLK+ +PK+KE+ER +++H+ V+
Sbjct: 184 DEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210

[Close]

BLAST of CmoCh06G008000 vs. TAIR 10
Match: AT4G27670.1 (heat shock protein 21 )

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22
Identity = 83/222 (37.39%), Postives = 116/222 (52.25%), Query Frame = 0


Query: 1   MASSIALRRLAASSAAKLFSPVRSASVLP-SVGRSFNTNAQIASYDDEDRSVDL-----D 60
           MAS+++    A  S       V S S  P SV       ++I + D  + S+D+      
Sbjct: 1   MASTLSFAASALCSPLAPSPSVSSKSATPFSVSFPRKIPSRIRAQDQRENSIDVVQQGQQ 60

Query: 61  SRRSGSLSRYRDRFPGFADV-----CDHFSLNRSLSQVLNLMDQFMED--PILAASRGVG 120
               GS    R +     DV      D  S  R++ Q+L+ MD+  ED  P+   +RG G
Sbjct: 61  KGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRG-G 120

Query: 121 AG---SRRGWDVRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRR 180
           +G    R  WD++E E  + +R DMPGLSKEDVK+SVE N L+IKGE  KE   +    R
Sbjct: 121 SGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGR 180

Query: 181 ----FSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEER 203
               + +RL LPDN  + D IKAE+KNGVL +++PK K E +
Sbjct: 181 SVSSYGTRLQLPDNC-EKDKIKAELKNGVLFITIPKTKVERK 220

[Close]

BLAST of CmoCh06G008000 vs. TAIR 10
Match: AT1G52560.2 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-12
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = 0


Query: 56  RRSG--SLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRG 115
           RR G  SL R  D    F    +  +L ++   +  + D F  +P     +         
Sbjct: 71  RRRGRKSLWRNTDDHGYFTPTLNGNTLIQATENMNRIFDNFNVNPFQLMGQ--------- 130

Query: 116 WDVRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEY---EEDR-------R 175
             V+E +D   LR ++PGL+KEDVK++V    L IKG+   E E    EED         
Sbjct: 131 --VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYG 190

Query: 176 RFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
            +++ L LPD+  +++ IKAE+KNGVL L +P+  E+ +K+V+ ++VE
Sbjct: 191 YYNTSLSLPDDA-KVEDIKAELKNGVLNLVIPRT-EKPKKNVQEISVE 225

[Close]

BLAST of CmoCh06G008000 vs. TAIR 10
Match: AT1G52560.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-12
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 116 VRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEY---EEDR-------RRF 175
           V+E +D   LR ++PGL+KEDVK++V    L IKG+   E E    EED          +
Sbjct: 129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYY 188

Query: 176 SSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 212
           ++ L LPD+  +++ IKAE+KNGVL L +P+  E+ +K+V+ ++VE
Sbjct: 189 NTSLSLPDDA-KVEDIKAELKNGVLNLVIPRT-EKPKKNVQEISVE 232

The following BLAST results are available for this feature:

BLAST of CmoCh06G008000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11890	1.2e-53	56.81	Small heat shock protein, chloroplastic OS=Oxybasis rubra OX=3560 GN=HSP23 PE=2 ...	[more]
Q96331	1.2e-51	55.76	23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
P46254	7.3e-46	56.28	Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum OX=3888 GN=HSP22 PE=2 ...	[more]
Q9FGM9	2.8e-45	47.89	23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=HS...	[more]
Q39818	2.1e-37	48.47	Heat shock 22 kDa protein, mitochondrial OS=Glycine max OX=3847 GN=HSP23.9 PE=2 ...	[more]

BLAST of CmoCh06G008000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFI7	5.3e-108	100.00	small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A6J1FF79	8.5e-106	99.06	small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A6J1KTF5	2.2e-98	93.84	small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1KXP6	2.1e-96	92.92	small heat shock protein, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1E9W1	1.7e-90	86.73	small heat shock protein, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]

BLAST of CmoCh06G008000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25200.1	8.2e-53	55.76	mitochondrion-localized small heat shock protein 23.6	[more]
AT5G51440.1	2.0e-46	47.89	HSP20-like chaperones superfamily protein	[more]
AT4G27670.1	2.0e-22	37.39	heat shock protein 21	[more]
AT1G52560.2	2.4e-12	32.74	HSP20-like chaperones superfamily protein	[more]
AT1G52560.1	9.2e-12	40.57	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 71..210 e-value: 2.0E-27 score: 97.7
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 84..204
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 115..210 e-value: 5.2E-21 score: 74.7
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 105..211 score: 26.695103
IPR044656	Heat shock protein HSP14.7/HSP23.5/HSP23.6-like	PANTHER	PTHR46991	23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL	coord: 1..211
None	No IPR available	PANTHER	PTHR46991:SF8	HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE	coord: 1..211
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 115..196 e-value: 1.09743E-24 score: 90.6912

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G008000.1	CmoCh06G008000.1	mRNA