CmoCh06G007970 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G007970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	tRNA_edit domain-containing protein
Location	Cmo_Chr06: 4247410 .. 4254056 (+)
RNA-Seq Expression	CmoCh06G007970
Synteny	CmoCh06G007970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAACTGCATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTGCGTTTTGGAATCGGATTCTTTTTTTTTTTGCAATTTCGATATGTGATTTTGTATTGACGATTTCGAGTGCGTATGTTTATTGCTTTTAGGCCTTTTTCATTAGTTACTTTTGGGTTTGAAGGAATGGGTAGAATTGGATTAATGAGAGGAAATGTTTGGATCGAATGATGGCGTTTATTAAAATGCCTCTCTTCCTGAAAAAATTATTTCAGGGTGGAACAGTATGGCCAATGATTTTGCACCATTTGATACTTATTGGATGCGAGAGAACTAAAAAATGTATTTCAAATCTTTATTGAATGGTTTTTAGTGGTAGACATTTTGAACCTGAATTCAACGGTCATTAGAGAGCAGTCAGTGTCTAGTCCCCTTCCTGAGTTATAACACTGTTGGGGAGGGACAAACATTTTCAGCTAGTTGAAAATTGAAATGAATTGAACCAAGCATTTATGTTGTGCTTTATTCAAGTCCTTATGTAATCATACTTCCAATGTAATTAGTACTACTTGAGATTCTAGTTTTCTGTAACGAAAATTACATCGCATTACATTACATTGTGATCATATATGCTCTCGGGAATTCCTATGTTTTATGCTGGGTTGCTTGAGACCATCTCTTTGGTGGCAAACACGGGGCTTTTTGATAGCATCATGGGATCTTTGTGAAAAGCTTTGGTGTTGAAGGAGGATTTGAGATGGAACTGAACTATATTTGTATGATTTTCTCGGAGCTTGTGCATTTTGTAGTTTTTTTTTACTCTTATATATAATTTTTCTTCTGTGCTAATCGGAGAGTGTGTTACATTCTTGAAAGGTTTCTATTCATCCTTATGTTAAATGGATTGATTTGGGAAATTTTCATAAAAGAACCAAATAATTCTTACAATACATAAGTATTTTCAGCTTCCAAATAGTTCTCGGCTTAGGCGTTCAAGGATTTTACTTTTAACAAAGTAAATTCTTCTCATCAACACTTGAAAGGAAGAGAAAGGAGGGAAAGAAAAGGCCTTATTTGTTCCTTTTGCATACATGTTGTTGATATAATTTGACAATTGTTAGATGTATGACTGTCAGTTTAAAGATGATAGAAAAATTTCATTGTTAGCTACTGTATGGCTTATGGCATCAATTTTTAATCGAATTTTGGTTGATAAGAACTCGACATTTATATATATTATATACAATATACCATATCTAGAAGTTCAATTAGGACCTCTCCTTCCTAGGCCATGCTTTTGTAGATGCTAAAACGTAACTGGGATCGCGTGTACTTCTGTTTTGTACTGTCAGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGGTATGCCTTCCTTTCTAATTTTCTCTAAACAGTTTGATCTAATGACCTGTATTCTCCTCTTTTAAAACATAACATTTCTTTATGTAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTGTAAGTTTTCTATTATCCCATTGGTGATGCCTTAATGGTTCCAATTGTAGTAATCCAAATTTTAGTTTACTTGATTCATTAATTGTTAATATATTCACATACATGCTTTGATTAAGTTAAGTGAGAAGGAGATCATGACACGATTCAAGCACCGTCACTTTGGGCATGCTTTGATTAATATAGATGAAAGAACAAGAGGGGGCCATAAAAACCAAACCAAACCAACCACGAGAAAAAATTACTGAAAAAAAAAGGAAAATCTCTAAACAAATTATACTTGATATGCCAAGGGGAGGCACTGATGTTTCAGATACTATAGTGGCTTGAAGTTTTCTTATTCATGGTTTCCTATTTGCACAGTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTAAGATTGTTAATGTTTGACTTGATAAATTGTAGATTTGAAATTATTCTAGCTCGAGCAACCCATATTTAAATCTTTGTTCTGAATTTTTACATATATGCTTTAATTTTTAAAGATCCCATCCCGTAATCGATATGCTCGTTTCTTAATTTGCCCCTAAATTTTTGAAGTGGTACATGTTATTTTGTGCAAATGTGATGGTGGCCAATTTTGTTGTAGGGTTCTTCTTTTCTTCTCTTGTTGGATGCAAGGCTAATTCTTTAGTAAATTCTACTTTACAATCTGTGTTCTATGATTTCATTGTGAAAATCTGTGACTACGTATAAAATCTACCCTTATCTGGAGATTACCATAACTAACTGGGATAAGATAGGAAACCTAAATGGGGATTAGACAAGAAAACGACTATCTATTCACGTTCAGACAACCATTGATATCATCACTAAAGGATGGAAAGTGAGAATGATTCACTAAGAAGAGAGTAAACCCAACTTGGACTAAGTTAAAAAAAAGAACCAATGGCTCGTTCGGATAAATTGTTTCCATTCGGGTATTGGGAATAACTCAAAAAATTGAAATTTCATTATTTCCCTTCTCAGATTTAAGATCGTTCAATTTTCTTCTTGGTATTTTGTATTGAAGAGATTAGTGCTAGAGTGTTCTTTTTGATCATGACTTGGTTTATGAAACACCTTCAAGGACAGAGGTATTATCTCCACCCTGACTAGACTCCAGCTTCCTTATCATTGGGCAATATCAACTCATGGATTTCTCATTTTGAGCCTGATTTTCTAATAGAACTTAATAGCTATGAACAATATAGTTGTAAGCAAGGCAGTTTGTTAAGAATTGTTGAGACTATTCTCATAAATAGAAGGGAGGTAGGCATTATTATAGAGGTTTTCCCTTGAGTGTGCTCAAGAGGGAAGTGTCCAATACCTCAAATTACTTGGGAGTTTTAGGTTGTATCTTTTACCTTATTATCTTTCAGTGTTTCCAAGTCTTATTACGTGATCTTTTAACATTCCTTCAATTACCCCACTCGTGGCATAGGAGGGGCTGAAGCATGGTCTAATTGTTGGAGAAATTATTTGATGGGGTGTCATAATGTGACCGACAATTTTGCGTTGTTGGATGTGGAAGAGAGAAATATAAATGTACTTCACATTTGTATTTGTCCAACGGTAGGATATATGTAAACAAATGAATCTTCTCGTCGTCAAGGAATCTCATTGTCCAATTTTGCTACACCTTAGGCTTGCATTAGAAACTATCTGACTCTACTATCTAGAATTGACAAAGTTGTTCTTGGCATCTGTTGAGTGACCATGTTGTTCTTCAGCCTTCACCTTCCCCGAAATGGAACCTAGGCTGTGTTTTGATATGCAAGAGCAAGCAATGGAGGTTTTAACCGTATTGTTTGAGCTACAGCTTCCGCAAAGGAAGCTGTATGAGACCTTGAAGGAAGATCAATGAACATGAAGGAAGTACAATTTATATTTCTTTATAAGAATTTGAGCTTTCATTTAGATAAAATGAAAGAATACAAAAGGACTTTGAATAAGGTAGCCCAACAAGAGAGGCTAAGCAACTAACTATACAAAAGATCAACCAGGTTGTCCAATATGAGGAATTACAATAAAAAGTGAAAACAAATAAAAAAGAGGTAAAATTTTTCTATCTTGTTGATACCTGGTGACATTATTTGAGGTAAAATGAATCAACTGTTCCTTAATCTTCCGAGAATTTTTCTTCTTCTTGGATATTCACATAGTTTATCAGGATATTCTGAGACTATGTGTTGAATCTGTTCTTCACGGTAAGGAAGCATTAAGAAGAAGCTAAAGGTAAGTGATCATTGAATTGGAACATGCCTTGTTCAAGCTGAGAAATGTGAATAAAATAACTGGAATGCTATATAACTAGAATGCTTGCTGATCAGTAACTTCGGCATGCTTTGTGCGACCGTAGTGGGTGTTCCATTGAACGGGAGAAAAGTTGGTACCATGAAATTGGCCCACATCTCGGGTCAAGTTATGTTTAGGGGGCACTGTAATGATAGTGTAGCTATTAGAAGCATATTATTAGTCACTAGTTATTGGTTGGGGTGTGAGGTAAGTTACTGAGAATTGGATTGCTCTTCAAGAGAAGGTTAAATTTAGAGTACACAAATCTTGGGAATGGTTTCTAGAGATAACAAGTGCCTTAAATGCTTAGTGAACCTTTTTATTTCACTTCGATATTGTCAAGTACATTTCTTTTCTTTGAAATAAGAAACAAATTTCGTCGATGTGATGAAAAGACAACCAAGAACGTAAACAATTTCATATCAGAATTATCATTACTAAAACATCTAAATAAAGCACTTTAAGAATATTAATGACGGAATGCTTGATTTTGCGTTACAAGATGCATCACAATTAGATATGAGCCAATATTGTCTTGATTTCAAGCTCAAGCTCAGGAACTCGATAAATTGTTCCTCGTCAAAACACATAAAATGCCACGAAGGTTGGAGAAACGGTGCTCGGATGGTTGATTATTTCAAATGATCACCTCTTCCAACTTTAATGGCTATAAAAAAAATCATGAAAAAGAAAACTGGCCCAGAATCCCAGTAGATCTTTTCTACTTTCCACTGAACATATATTACATACTTGGTACAAATCTTTCTTATCCAAGTGAACCCTTGCTAACTAACAAGGATATCAAACAAACTCCGAATGAACAGAGATCAGATGATGAAAATATATTATTTAGCCTGGTAATATCGTCCTTAATTACGAGTAAGACGCATGAAGTTAATAAATCAAATATTTCAACATTAGCATATAGGCTCTGATGCTCATTTGGAACTGCCAGAAATGTATTACAATAATAGACATTTTTGCTCATTCTGATCTGTGTGAAATGCGTATTTCCCCATGTTGGATCTTTTTTGATCCTCTTGCTTCTGATTTTGGTCCAGCTTCCAGCTACTGTGCTGGACCAGTGTTTCAAATGTCATGTCTGTCACATTTTATGTGTTGGACAGTAGTTTGTGGTCCACTATAGCTTTTGCCTAGACCAATGATTTCCTGCCAGTCTGCCACCACCGAAAAATGCCTCGATCGGAAATTAGAACTAAAACCTGGTTGTTCGACAGCAAAAGTGTGTGCGCGAACACAAAATGGTTCTGACATGCCTAAGTGTTAAGCAGATAATCTATCAGTGGGTGGGTAGATTGATGAAATTGTCACACCAACTAAAAAGCATGGAAGATCAGCCTACAAATATAAACAGAAAAATGTTCTCTTCTTTCTGAATTCTGATGCATCATGACTATATTTGTATGGTAAATCTCAATCTTGTTCATCATGCTCTAATCGATCAATTACACTCTTGTTTCAGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCTGCCCAAGCTCAACGACGACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTTTATTTAAATTATTTCTGCTTCTGAGGATCAACTGTTTGGATGGAAGCAAGAACATAAAAAAACTAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTCTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCTTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGCGCAAGACTATGGTTTAGTTTGGCTTTGTCAACCATTTGAAAGTGAGTTTTTCTTTGCTTTTTCTTTTTAAATCTTGATTTTGAGATACCGGACTAGGTATCTCTGTACCCGCCTAAACTCATTATTAGCCGATATTGTCATTTTTTGGCTTTTTCTTTCGAGCTTTCCCCCGAAGTTTTTAAAACGCGTTTGCTATGGAAAGGTTTCCATGCCCTTGTAAAGAATGATTTGTTCCCCTTTCCAACCGATATGGGATTTTGGAATCCAGATCTAACCGTTTTTATATTGAATATAAAATAAG

mRNA sequence

AAGGAAACTGCATTCATCCGAATTGCCCAATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAGAGAATCAGTTTTCAGCCAGTTCGCCCTGCCCAAGCTCAACGACGACTCAACACAACCGACTAATACCAACAGGATCAAGGTTTTTAGTATCGTTTTATTTAAATTATTTCTGCTTCTGAGGATCAACTGTTTGGATGGAAGCAAGAACATAAAAAAACTAAAAAGTTTCAGTGCTTAGAAATGGGATTCAGCTACTTAGAATGGCGGAAGTTGTTACAATCTAACCATTTAATAGGGCATTAATGATTTTGATTAAAGGACCACTTTCAACTTCAGCAATTCATTATATGATTATGATATGTGAGTAATAAAAGTGAGTAGCAAACATACGCAGAATTTGTTGATCAAAATGGAGCAACTCTGCAATTCATGTACGCAGAATCAAGAACATGGAGTAGTCATATCAAAGAAATTGCCGGTGTCTTTTTGTGAACATTTATGAGGGATGCTACTTTACTTGGCTGCATCAGCGCAAGACTATGGTTTAGTTTGGCTTTGTCAACCATTTGAAAGTGAGTTTTTCTTTGCTTTTTCTTTTTAAATCTTGATTTTGAGATACCGGACTAGGTATCTCTGTACCCGCCTAAACTCATTATTAGCCGATATTGTCATTTTTTGGCTTTTTCTTTCGAGCTTTCCCCCGAAGTTTTTAAAACGCGTTTGCTATGGAAAGGTTTCCATGCCCTTGTAAAGAATGATTTGTTCCCCTTTCCAACCGATATGGGATTTTGGAATCCAGATCTAACCGTTTTTATATTGAATATAAAATAAG

Coding sequence (CDS)

ATGGGGACCGAGGCTGGAGCAATGGCAGAGCGAAACTCCATGGAAGCACTAGCGAAGCTCGAATACCGCCAGACCCTAATCATCAATCGAATTTCGAAGCTCGAGCTCGCTTATCTTCCAAATCTCGACTCGGAACCTTCTCCTATTTCCTCTGAGGGGGCAGATGGCGACACCGTGGCTCGACTCTCCACCATTCTTCGAACCAACGCTGTCAATGACTTCTCCTTCAAGAGGGTTCCCTCTGATTACTACGATTGGTCTCTCGAAGCCCGACGGGACGTTCTTAATGCCGCTTCGGTTGACCATCTCTGCAAGAGCATTGTTCTGGTAAATACTCAAGCCCAATCTCATGTCGTTGATTGCAGTAACCGCAACAATTCAAAATACTATGTTGTTGTTGTTCAGTATTCTGCTAAATTCAATGCTGAAACTGTTAGAAGCTTCTTGTATTCACTCAACGATGGAAAGATACCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAGAGCTAACTGGATATGTGCATAATGCAGTGACATGCATTGGCATGAAAACGGATATTCCGGTGATTTTGGACGAAGCGATTGCGAAACTAAGTCCTGATTATTTTTGGCTGGGCGGTGGGGAAGTCGACCTGAAGTTAGGTATCAGGACATCAGAGTTCATAAACTTTGTTAAACCCTTCATTATCAAGTGTAGCTAG

Protein sequence

MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVARLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS

Homology

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BLAST of CmoCh06G007970 vs. ExPASy TrEMBL
Match: A0A6J1GI39 (uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC111454353 PE=4 SV=1)

HSP 1 Score: 473.8 bits (1218), Expect = 4.3e-130
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA
Sbjct: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

[Close]

BLAST of CmoCh06G007970 vs. ExPASy TrEMBL
Match: A0A6J1KXM4 (uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 233/238 (97.90%), Postives = 236/238 (99.16%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MGTEAGA+AERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISS+ ADGDTV+
Sbjct: 1   MGTEAGAIAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSDKADGDTVS 60

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLSTILRTNAVNDFSF RVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD
Sbjct: 61  RLSTILRTNAVNDFSFNRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH
Sbjct: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS
Sbjct: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 238

[Close]

BLAST of CmoCh06G007970 vs. ExPASy TrEMBL
Match: A0A1S3BLB4 (uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.7e-113
Identity = 204/238 (85.71%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGADGDTVA 60
           MG+E+ AMAE+NSMEALAKLE+RQTLI++RIS LEL YLPNLDS PS + S+GAD DTVA
Sbjct: 5   MGSESEAMAEQNSMEALAKLEHRQTLILHRISNLELKYLPNLDSPPSSVPSDGADDDTVA 64

Query: 61  RLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVD 120
           RLS ILRTNAVNDFSFKRVPSDYYDW+LEARRDVL+AAS+DHLCKSIVLVNTQA SHVVD
Sbjct: 65  RLSAILRTNAVNDFSFKRVPSDYYDWALEARRDVLDAASIDHLCKSIVLVNTQAPSHVVD 124

Query: 121 CSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVH 180
           CS+RNNSKYY+VVVQY+AKFNAE V+SFLYSLNDGKI KKKFNLRLAPEE S +LTGY H
Sbjct: 125 CSDRNNSKYYIVVVQYTAKFNAEAVKSFLYSLNDGKIAKKKFNLRLAPEETSVKLTGYEH 184

Query: 181 NAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           N VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE+DLKLGIRTSEFINFVKPFIIKCS
Sbjct: 185 NGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGEIDLKLGIRTSEFINFVKPFIIKCS 242

[Close]

BLAST of CmoCh06G007970 vs. ExPASy TrEMBL
Match: A0A0A0L4A0 (tRNA_edit domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.2e-100
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MGTEAGAMAERNSMEALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSEGA-DGDTV 60
           MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GA D DTV
Sbjct: 1   MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTV 60

Query: 61  ARLSTILRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVV 120
           ARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS+DHLCKSIVLVNTQA SH+V
Sbjct: 61  ARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIV 120

Query: 121 DCSNRNNSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYV 180
           DCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY 
Sbjct: 121 DCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYE 180

Query: 181 HNAVTCIGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           HN VTCIGMKTDIPVILDEAI KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Sbjct: 181 HNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS 224

[Close]

BLAST of CmoCh06G007970 vs. ExPASy TrEMBL
Match: A0A6P4API6 (uncharacterized protein LOC107433473 OS=Ziziphus jujuba OX=326968 GN=LOC107433473 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.3e-91
Identity = 172/228 (75.44%), Postives = 195/228 (85.53%), Query Frame = 0


Query: 15  EALAKLEYRQTLIINRISKLELAYLPNLDSEPSPISSE----GADGDTVARLSTILRTNA 74
           E+LA+LE  QT I+ RIS LEL++L N DS P P +S+     A+ DT A LS ILRT+ 
Sbjct: 3   ESLAELERIQTRILQRISALELSHLHNPDSAPFPSTSDHSNYDAEADTEAHLSAILRTHG 62

Query: 75  VNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRNNSKYY 134
           VNDFSFK+VP DYYDW LEARR+ L AASVDHLCKSIVLVNTQAQS++VDCS+  NSKYY
Sbjct: 63  VNDFSFKKVPGDYYDWPLEARREALAAASVDHLCKSIVLVNTQAQSNIVDCSDHRNSKYY 122

Query: 135 VVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTCIGMKT 194
           VVVVQY+A+FNAETV++FLY LN+GKI KKKFNLRLAPEEIS +LTGY HNAVTCIGMKT
Sbjct: 123 VVVVQYTARFNAETVKNFLYLLNNGKIAKKKFNLRLAPEEISVKLTGYEHNAVTCIGMKT 182

Query: 195 DIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           DIPVILDEAIAKL PD+FWLGGGE DLKLGI+TSEFINFVKPFI+ CS
Sbjct: 183 DIPVILDEAIAKLDPDFFWLGGGETDLKLGIKTSEFINFVKPFIVNCS 230

[Close]

BLAST of CmoCh06G007970 vs. TAIR 10
Match: AT4G16510.1 (YbaK/aminoacyl-tRNA synthetase-associated domain )

HSP 1 Score: 318.9 bits (816), Expect = 3.4e-87
Identity = 160/233 (68.67%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 8   MAERNSME-ALAKLEYRQTLIINRISKLELAYLP-NLDSEPSPISSEGADGDTVARLSTI 67
           M +   ME A A+LE  Q  I+++IS LE ++LP N  + PSP S    + +TV RLSTI
Sbjct: 1   MDDGEGMETAAAELERLQIEILHKISILESSFLPQNSSAAPSP-SLPVDENETVTRLSTI 60

Query: 68  LRTNAVNDFSFKRVPSDYYDWSLEARRDVLNAASVDHLCKSIVLVNTQAQSHVVDCSNRN 127
           L++  VNDF FKRV +DYYDW LE+RRDVL A+SVDHLCKSIVLVNTQA S+++DCS+ N
Sbjct: 61  LQSGGVNDFCFKRVATDYYDWPLESRRDVLGASSVDHLCKSIVLVNTQAASNILDCSDPN 120

Query: 128 NSKYYVVVVQYSAKFNAETVRSFLYSLNDGKIPKKKFNLRLAPEEISAELTGYVHNAVTC 187
           NSKYYVVVVQY+A+FNAE V+ FLYSLN+GKIPKK+FNLRLAPEE S +LTG+ HN VTC
Sbjct: 121 NSKYYVVVVQYTARFNAEAVKQFLYSLNEGKIPKKRFNLRLAPEETSIKLTGFEHNGVTC 180

Query: 188 IGMKTDIPVILDEAIAKLSPDYFWLGGGEVDLKLGIRTSEFINFVKPFIIKCS 239
           IGMKT+IPVILDEAI KL PD+FWLGGGE+DLKLG+RTSEF+ FVKPFI+ CS
Sbjct: 181 IGMKTNIPVILDEAITKLKPDFFWLGGGEIDLKLGVRTSEFLEFVKPFIVPCS 232

The following BLAST results are available for this feature:

BLAST of CmoCh06G007970 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G007970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GI39	4.3e-130	100.00	uncharacterized protein LOC111454353 OS=Cucurbita moschata OX=3662 GN=LOC1114543...	[more]
A0A6J1KXM4	2.0e-127	97.90	uncharacterized protein LOC111498483 OS=Cucurbita maxima OX=3661 GN=LOC111498483...	[more]
A0A1S3BLB4	4.7e-113	85.71	uncharacterized protein LOC103490895 OS=Cucumis melo OX=3656 GN=LOC103490895 PE=...	[more]
A0A0A0L4A0	1.2e-100	79.50	tRNA_edit domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G020620 P...	[more]
A0A6P4API6	2.3e-91	75.44	uncharacterized protein LOC107433473 OS=Ziziphus jujuba OX=326968 GN=LOC10743347...	[more]

BLAST of CmoCh06G007970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16510.1	3.4e-87	68.67	YbaK/aminoacyl-tRNA synthetase-associated domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	GENE3D	3.90.960.10		coord: 71..238 e-value: 2.3E-29 score: 104.0
IPR036754	YbaK/aminoacyl-tRNA synthetase-associated domain superfamily	SUPERFAMILY	55826	YbaK/ProRS associated domain	coord: 74..235
IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	PFAM	PF04073	tRNA_edit	coord: 103..229 e-value: 2.3E-8 score: 34.1
None	No IPR available	PANTHER	PTHR30411:SF4	YBAK/AMINOACYL-TRNA SYNTHETASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN	coord: 14..238
None	No IPR available	PANTHER	PTHR30411	UNCHARACTERIZED	coord: 14..238
None	No IPR available	CDD	cd04332	YbaK_like	coord: 87..235 e-value: 2.05875E-20 score: 81.8205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G007970.1	CmoCh06G007970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity