CmoCh06G007540 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G007540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 11
LocationCmo_Chr06: 3916473 .. 3919984 (-)
RNA-Seq ExpressionCmoCh06G007540
SyntenyCmoCh06G007540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTTACAAATCACACAGTCGAAATTGTTTCATGAAACATTTCAAAATTGGGATCAAATCAGGTTAGTTCACGATCAATTCGGAGAGTATTTCCACAAAAAATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCTCCACCGAACTCCCCCTCCGCTGCCGATGATCTCGAAATTCAGACCAACGTTGCTGCCACCGTCGACGCCGACGCTCTTGATTTGCACGATGGTGACGATGAACCAAAATCCGCCGCCGCCGCCGCCACAAATTCTGGTATTCCTTCTGCATCCACTACTTCTTTGTTCGTTTCGTCTTCCTCCAATGTCTCTGCCGCACCTAAAACCAAAGAAGACGACGATGAAGAAGAGGAAGAGAATGTCGAAGTGGAGCTCGCTAAATTCCCCTCGAGTGGCGATCCAGATAAGATGGCGAAGATGCAGTATGTTTTCTTGTCTCTCTCAATATTTAGGTTTAACTTTTGTTCTTACTTCATTCCTCTCTTTCAAGTTGCGCTAGCTTAGTGTCGATGTTATCGTCAACTTTGATGCTAAAAAATACTTCCTCTGTCGGCTTATTTGACAAGGTTATGATGATTTTTAGGTTAATTCTCATGCATTGTTTGTGTTCGTGAAAAGTCTGTTGAGCTTATATTTAACCGATGATATGAAATCTTGTAAAAGGGTGATAACTCGAACTGATACCGAGGAAAATCCTATCAAGGAAGGTTTAAGCCTTCAAGTTTGCCAAATGGCTATGAAGATTGTAACTTTTTGAGGGGATAGCATTTACATCAAGGAAAAATGTCATAATAAAATCAGAATCTAAGAGTCTATAAGAAGAAATTGAGATTGTTTAAGCTCTAATGTTTGGAACCAAAGATGGTGGAACATCATACAGTTGGAAATAGCCACAATCTGGCTTCAAGGCATTTAGAAACATGGAGCATATTTGTTTGAAAGGGGCATTGTGAAAGAAAGATGGCCTTGTGTCTCGTCACTCGTAGTATCGGTTGATGAAATGCTGACATCAAGCATTCCAAAAGATAAATTTTGTTTAGTAGGAATTTTCTTTTTAAGCAATTTTATTTCAATAGACTGCATCAGTCACAAGTTCTTGCAAATTGGAGAATCAATGTCCTTAGACTTATGTGGAATAAGATAGATCATTAGCAGGAACTAGATACCTAATTTATAGGAACTGCACTTGTTAGGTGCTTTCGCAGCTTGTCATGATGTTCGAAATGTTTGTAGCATGTAGTCCTTTGGACAGGACAGTTGATTGATATGAATAGAGTGTGAACTAGTTCATGATGATAATTTGTAAAACTTCACAAAATCCCTTTGTCCTTGCCAGGATTTTGCCTTGAACCTGACCTAACCATTGCATGTTGCTTCCTGCTCTTCCAAATTCCAGGTGTTCCCAATAAGATTAGTGCAATAGCCTTGTGATGGTTTTCTTAATCAAGAGTTCCAAAAAGGTTTGCTTCTAAGATAAGCTTATTTGTTCCTCCCAATTGGATATTACTTGATCCTTAAAACACTGATGATGCATCCACATACTGAAGTTTATAGATTGACTTACATGCAAATGCAGTTGTATGCTTGGCATGTTATTTCAAAATTACTCTTGATTAGTTAAGTGATTGGGTGAGATCCCACATCGATTGGAGAGGAGAGTGAGACATTCTCTATAAGGGTGTGGAAACCTCTCTCAAGAGACACGTTTTAAAAACCTTGAGGGGAAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGACTTGGCCTATTACAGATTGTGTGCTGAAAAAATAAATAAGAGTTATAGGTGGCATTCAAGATTTATAAGGAAGCCTAAACTTTGGATAAAAACCTTGGGACTATGATCTTATACCAACTCCAAGACTTAATCAGTCATCCCTAACCCTGTGTACTATGCTGAAGACGCTAGGAAGTCAATTTGTATCTTGTTCATTCATGACTTTCAACGAACGCCTCCCTTGGCTTTTGCTATGTACTGGAACTTACACACGCTGGCAATGGTGAAGATGTGGCCAGTAATCAATTATCCTTTAATACCACTCTTTCTTTTGAATTGCTCAATTGTATAAAACTATATTCAGTGCAATTATCCATTAAGGGCCTAATTTTAAACAAACGTATGGTGCTGGAATATATTTAATTTTTATTTAAATTTGTGGTAGGAACTCAGTTCTGTATTCCTGACAGTTAAGATTGTGTACTTCAAATTCTTAAGCTTCTATCATGTTTTTGTTTCTTCCAGTTTCTCTTGTACGTTCATAATTCTTCTCTTGTTAAAACATAAGACACCCTCTGGGCTTCATCCATTATAATTGCAAGTCGTGCTTTTAAATTGGAAAAAAAATGGATATTTTTTTTTATGGTTGCTCCAGAGAGTTGGTTGAAAATGACAGTATTTTTTAAGATTTTTGCGGGATCATTTTTGTTACTCAAGAGCTTCTCTTGGTTTTGTTATGAATGAACTTTACATACAGCATCATGAAGTCTTTACTTTGGAAAGAATCTTGTTGTAACTTGTCTTAACATTTTGCCAGAGCCATTCTTTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGGTATGAATCTTAATATTTTCCAATAGCAAAAGACAAATAGATGTGGTAACAAAGGGTGGGGGTGGGAATGCATTCTTCATCCGCCACCCCAGGAAACTTGAATCCATCTCATCCTCAATCTCTCAGGATCTAAGATGATTTTATCTTTATGAACCTGAATTCAGTTCATCTTGTTTCCATTCATTTGTAAATCACAGCTATTAGCAAGCATCTCAGGAACGCAGAAAATTTCTGTACCAATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTGGAAACGGGTATGTATAAACTTCTCGAAAACCCAATCCATTGTTCATGTAGGACTAGGACTCAAAAGATGCATTTCCTTTGCTCTGTTCATGTTAATACCAATGTGAATCAAAGACAAAAGAATCTGCATATTCCAAAGCGAGATCGACTCATTTCAATACTTCGATTTTGTTTCAGCTAGAGTAGTTATGACTGAGCGGAATGATTCTGGAGCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAATCGGTCTATTCAATTTCTAGTCTTTGTATTAGGAGTTTTTGTAGGCAAAACATCTCATCATATATATTACTTAAGTTTCTAACATATTTTTGTATAAAATTGGCTTGTTTGTGTATCAAACTTCTGAAAAGGAGGAAAACTCAGGCATGGAGTTAGCAGCACTTGAATTAAACTTGTACATTTTAAGCATTAGAACACATTTAATAATATTATATGATGATATGCTATGTTCATAGGTG

mRNA sequence

CAGCTTACAAATCACACAGTCGAAATTGTTTCATGAAACATTTCAAAATTGGGATCAAATCAGGTTAGTTCACGATCAATTCGGAGAGTATTTCCACAAAAAATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCTCCACCGAACTCCCCCTCCGCTGCCGATGATCTCGAAATTCAGACCAACGTTGCTGCCACCGTCGACGCCGACGCTCTTGATTTGCACGATGGTGACGATGAACCAAAATCCGCCGCCGCCGCCGCCACAAATTCTGGTATTCCTTCTGCATCCACTACTTCTTTGTTCGTTTCGTCTTCCTCCAATGTCTCTGCCGCACCTAAAACCAAAGAAGACGACGATGAAGAAGAGGAAGAGAATGTCGAAGTGGAGCTCGCTAAATTCCCCTCGAGTGGCGATCCAGATAAGATGGCGAAGATGCAAGCCATTCTTTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGAACGCAGAAAATTTCTGTACCAATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTGGAAACGGCTAGAGTAGTTATGACTGAGCGGAATGATTCTGGAGCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAATCGGTCTATTCAATTTCTAGTCTTTGTATTAGGAGTTTTTGTAGGCAAAACATCTCATCATATATATTACTTAAGTTTCTAACATATTTTTGTATAAAATTGGCTTGTTTGTGTATCAAACTTCTGAAAAGGAGGAAAACTCAGGCATGGAGTTAGCAGCACTTGAATTAAACTTGTACATTTTAAGCATTAGAACACATTTAATAATATTATATGATGATATGCTATGTTCATAGGTG

Coding sequence (CDS)

ATGAAGCAATCGAAGGACCCATTTGAAGCGGCGTTTGAGGAGCAGGAGGAATCTCCACCGAACTCCCCCTCCGCTGCCGATGATCTCGAAATTCAGACCAACGTTGCTGCCACCGTCGACGCCGACGCTCTTGATTTGCACGATGGTGACGATGAACCAAAATCCGCCGCCGCCGCCGCCACAAATTCTGGTATTCCTTCTGCATCCACTACTTCTTTGTTCGTTTCGTCTTCCTCCAATGTCTCTGCCGCACCTAAAACCAAAGAAGACGACGATGAAGAAGAGGAAGAGAATGTCGAAGTGGAGCTCGCTAAATTCCCCTCGAGTGGCGATCCAGATAAGATGGCGAAGATGCAAGCCATTCTTTCACAATTTACAGAAGAACAGATGAGTCGTTACGAGTCCTTCCGCAGAGCTGGATTTCAGAAAGCTAATATGAAAAGGCTATTAGCAAGCATCTCAGGAACGCAGAAAATTTCTGTACCAATGACGATCGTAGTGTCTGGGATAGCAAAGATGTTCGTTGGTGAACTCGTGGAAACGGCTAGAGTAGTTATGACTGAGCGGAATGATTCTGGAGCTATCAGGCCATGCCATCTCAGAGAAGCATATAGAAGACTAAAGCTTGAAGGTAAGATTCCAAGGAAATCAGTGCCTAGACTCTTTCGCTAA

Protein sequence

MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Homology
[Close]
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match: Q9M565 (Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702 GN=TAF11 PE=1 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.3e-55
Identity = 130/231 (56.28%), Postives = 159/231 (68.83%), Query Frame = 0 

Query: 1   MKQSKDPFEAAF-EEQEESPPNSP-------SAADDLEIQTNVAATVDADALDLHDGDDE 60
           MK SKDPFEAA  EEQEESPP SP         ++D  I+ +     D   +D+      
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQTQDEDERPVDVR----R 60

Query: 61  PKSAAAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDP 120
           P   A             TS+ V+ + N     K K++DDEEEEEN++VEL K+P+S DP
Sbjct: 61  PMKKA------------KTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDP 120

Query: 121 DKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAK 180
            KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAK
Sbjct: 121 AKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAK 180

Query: 181 MFVGELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           MFVGELVETARVVM ER +SG IRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 MFVGELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

[Close]
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match: F4HR03 (Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=3702 GN=TAF11B PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.2e-37
Identity = 106/224 (47.32%), Postives = 128/224 (57.14%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60
           MK SKDPFEAA EEQEESP  +                         +GD+         
Sbjct: 32  MKHSKDPFEAAMEEQEESPVETEQTL---------------------EGDER-------- 91

Query: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA-KMQ 120
                                 A  K K     E +   EVE  K  +  DP   A KMQ
Sbjct: 92  ----------------------AVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKMQ 151

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
            ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LV
Sbjct: 152 KILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDLV 204

Query: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           ETARVVM ER +SG IRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 ETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

[Close]
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match: Q5RA91 (Transcription initiation factor TFIID subunit 11 OS=Pongo abelii OX=9601 GN=TAF11 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-17
Identity = 76/206 (36.89%), Postives = 111/206 (53.88%), Query Frame = 0 

Query: 9   EAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAATNSGIPSA 68
           E    ++  + P  P A D   I  +     DAD  +    + E KS           S 
Sbjct: 14  ETGESDETAAAPGDPGATDTDGIPEDTDGDADADLKEAAAEEGELKSQDI--------SD 73

Query: 69  STTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQAILSQFTEE 128
            TT     SS    AA K K D  E++E+  +V         D D++ KMQ ++S F+EE
Sbjct: 74  LTTVEREDSSLLTPAAKKLKIDTKEKKEKKQKV---------DEDEIQKMQILVSSFSEE 133

Query: 129 QMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARVVMTE 188
           Q++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  V  +
Sbjct: 134 QLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEK 193

Query: 189 RNDSGAIRPCHLREAYRRLKLEGKIP 215
             +   ++P H+REA RRLK +G+IP
Sbjct: 194 WGEMPPLQPKHMREAVRRLKSKGQIP 201

[Close]
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match: Q5U1X0 (Transcription initiation factor TFIID subunit 11 OS=Rattus norvegicus OX=10116 GN=Taf11 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-17
Identity = 75/210 (35.71%), Postives = 114/210 (54.29%), Query Frame = 0 

Query: 9   EAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAATNSGIPSA 68
           E    E+  + P +P +AD   I        DAD            S  AAA  S + S 
Sbjct: 14  EPGESEETRATPGAPVSADTEGIPEETDQVGDAD------------SKEAAAEESELKSQ 73

Query: 69  STTSLFVSSSSNVS----AAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQAILSQ 128
             + +  +   + S    AA K K D  +++E+  +V         D D++ KMQ ++S 
Sbjct: 74  DVSDVTAAEREDPSLLTPAAKKLKLDTKDKKEKKQKV---------DEDEIQKMQILVSS 133

Query: 129 FTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVETARV 188
           F+EEQ++RYE +RR+ F KA +KRL+ SI+GT  +S  + I +SGI+K+FVGE+VE A  
Sbjct: 134 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALD 193

Query: 189 VMTERNDSGAIRPCHLREAYRRLKLEGKIP 215
           V  +  +   ++P H+REA RRLK +G+IP
Sbjct: 194 VCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201

[Close]
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match: Q54XM9 (Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum OX=44689 GN=taf11 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-17
Identity = 61/175 (34.86%), Postives = 104/175 (59.43%), Query Frame = 0 

Query: 48  DGDDEPKSAAAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFP 107
           D D++   + +  ++S    + + S   S S + S+  +  +DDD+E   N+        
Sbjct: 282 DSDEDSDDSDSDESDSDDSDSDSDSDSDSDSDSDSSEGEGNDDDDDESTFNL-------- 341

Query: 108 SSGDPDKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVV 167
           S     +  +M  ++  F+E+Q +R+E ++R+ FQ+AN+K+++ S+  +  ++    IV+
Sbjct: 342 SEMQVRENTQMNTLIKHFSEDQQTRFEYYKRSSFQRANIKKVMQSVL-SAPVNQTSAIVM 401

Query: 168 SGIAKMFVGELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIP--RKSVPR 221
            GIAK+FVGE+VE AR +M E  ++G IRP H+REAYRRLK    IP  +KSVP+
Sbjct: 402 GGIAKVFVGEIVELARSIMEEWRETGPIRPRHIREAYRRLKESNSIPYYKKSVPK 447

[Close]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match: A0A6J1FLN4 (transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111446328 PE=3 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.0e-110
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60

Query: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 223

[Close]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match: A0A6J1KZI1 (transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111498496 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.2e-107
Identity = 217/224 (96.88%), Postives = 222/224 (99.11%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPK-SAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAAT DADA+DLHDGDD+PK +AAAA
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATADADAIDLHDGDDDPKTAAAAA 60

Query: 61  ATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120
           ATNSG+PSASTTSLFVSSSSN+SAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ
Sbjct: 61  ATNSGVPSASTTSLFVSSSSNISAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQ 120

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
           AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV
Sbjct: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180

Query: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

[Close]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match: A0A6J1DFN0 (transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020384 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.1e-98
Identity = 206/227 (90.75%), Postives = 215/227 (94.71%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPK----SA 60
           MKQSKDPFEAAFEEQEESPPNSPSAAD +EIQTNVAA   +DALD HDGDD+PK    +A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADVVEIQTNVAA---SDALDSHDGDDDPKAATAAA 60

Query: 61  AAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA 120
           AA AT+SGIPSA TTS+FVSSSSNVSAAPKTK+DD+EEEEENVEVELAKFPSSGDPDKMA
Sbjct: 61  AAVATHSGIPSAPTTSMFVSSSSNVSAAPKTKDDDEEEEEENVEVELAKFPSSGDPDKMA 120

Query: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180
           KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG
Sbjct: 121 KMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVG 180

Query: 181 ELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           ELVETARVVMTERND+G IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 ELVETARVVMTERNDTGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224

[Close]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match: A0A5D3D798 (Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001040 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.2e-94
Identity = 203/223 (91.03%), Postives = 209/223 (93.72%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T V A V ADA DL DGDD+PKS A+ A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTV-APVPADAFDLQDGDDDPKS-ASVA 60

Query: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+S  P  STTS+FVSSSS+VSAAPKTKEDD+EEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  THSVTP-VSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           TARVVMTERNDSG IRPCHLREAYRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGPIRPCHLREAYRRLKLEGKIPRKSVPRLFR 220

[Close]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match: A0A1S4DX73 (transcription initiation factor TFIID subunit 11 OS=Cucumis melo OX=3656 GN=LOC103490961 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.5e-94
Identity = 202/223 (90.58%), Postives = 208/223 (93.27%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60
           MKQSKDPFEAAFEEQEESPPNSPSAADDLEI T V A V ADA DL DGDD+PKS A+ A
Sbjct: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIPTTV-APVPADAFDLQDGDDDPKS-ASVA 60

Query: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMAKMQA 120
           T+S  P  STTS+FVSSSS+VSAAPKTKEDD+EEEEENVEVELAKFPSSGDPDKMAKMQA
Sbjct: 61  THSVTP-VSTTSMFVSSSSHVSAAPKTKEDDEEEEEENVEVELAKFPSSGDPDKMAKMQA 120

Query: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180
           ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE
Sbjct: 121 ILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELVE 180

Query: 181 TARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           TARVVMTERNDSG IRPCHLRE YRRLKLEGKIPRKSVPRLFR
Sbjct: 181 TARVVMTERNDSGPIRPCHLREVYRRLKLEGKIPRKSVPRLFR 220

[Close]
BLAST of CmoCh06G007540 vs. TAIR 10
Match: AT4G20280.1 (TBP-associated factor 11 )

HSP 1 Score: 215.7 bits (548), Expect = 3.8e-56
Identity = 130/231 (56.28%), Postives = 159/231 (68.83%), Query Frame = 0 

Query: 1   MKQSKDPFEAAF-EEQEESPPNSP-------SAADDLEIQTNVAATVDADALDLHDGDDE 60
           MK SKDPFEAA  EEQEESPP SP         ++D  I+ +     D   +D+      
Sbjct: 1   MKHSKDPFEAAIEEEQEESPPESPVGGGGGGDGSEDGRIEIDQTQDEDERPVDVR----R 60

Query: 61  PKSAAAAATNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDP 120
           P   A             TS+ V+ + N     K K++DDEEEEEN++VEL K+P+S DP
Sbjct: 61  PMKKA------------KTSVVVTEAKN-----KDKDEDDEEEEENMDVELTKYPTSSDP 120

Query: 121 DKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAK 180
            KMAKMQ ILSQFTE+QMSRYESFRR+  Q+  MK+LL  ++G+QKI +PM IV  GIAK
Sbjct: 121 AKMAKMQTILSQFTEDQMSRYESFRRSALQRPQMKKLLIGVTGSQKIGMPMIIVACGIAK 180

Query: 181 MFVGELVETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           MFVGELVETARVVM ER +SG IRPCH+RE+YRRLKLEGK+P++SVPRLFR
Sbjct: 181 MFVGELVETARVVMAERKESGPIRPCHIRESYRRLKLEGKVPKRSVPRLFR 210

[Close]
BLAST of CmoCh06G007540 vs. TAIR 10
Match: AT1G20000.1 (TBP-associated factor 11B )

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-38
Identity = 106/224 (47.32%), Postives = 128/224 (57.14%), Query Frame = 0 

Query: 1   MKQSKDPFEAAFEEQEESPPNSPSAADDLEIQTNVAATVDADALDLHDGDDEPKSAAAAA 60
           MK SKDPFEAA EEQEESP  +                         +GD+         
Sbjct: 32  MKHSKDPFEAAMEEQEESPVETEQTL---------------------EGDER-------- 91

Query: 61  TNSGIPSASTTSLFVSSSSNVSAAPKTKEDDDEEEEENVEVELAKFPSSGDPDKMA-KMQ 120
                                 A  K K     E +   EVE  K  +  DP   A KMQ
Sbjct: 92  ----------------------AVKKCKTSVVAEAKNKDEVEFTKNITGADPVTRANKMQ 151

Query: 121 AILSQFTEEQMSRYESFRRAGFQKANMKRLLASISGTQKISVPMTIVVSGIAKMFVGELV 180
            ILSQFTEEQMSRYESFRR+GF+K++M++L+  I+G  K+   M IVV GIAKMFVG+LV
Sbjct: 152 KILSQFTEEQMSRYESFRRSGFKKSDMEKLVQRITGGPKMDDTMNIVVRGIAKMFVGDLV 204

Query: 181 ETARVVMTERNDSGAIRPCHLREAYRRLKLEGKIPRKSVPRLFR 224
           ETARVVM ER +SG IRPCH+RE+YRRLKL+GK+P++SV RLFR
Sbjct: 212 ETARVVMRERKESGPIRPCHIRESYRRLKLQGKVPQRSVQRLFR 204

The following BLAST results are available for this feature:
BLAST of CmoCh06G007540 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M5655.3e-5556.28Transcription initiation factor TFIID subunit 11 OS=Arabidopsis thaliana OX=3702... [more]
F4HR032.2e-3747.32Transcription initiation factor TFIID subunit 11b OS=Arabidopsis thaliana OX=370... [more]
Q5RA912.0e-1736.89Transcription initiation factor TFIID subunit 11 OS=Pongo abelii OX=9601 GN=TAF1... [more]
Q5U1X03.4e-1735.71Transcription initiation factor TFIID subunit 11 OS=Rattus norvegicus OX=10116 G... [more]
Q54XM95.8e-1734.86Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum OX=... [more]
BLAST of CmoCh06G007540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FLN46.0e-110100.00transcription initiation factor TFIID subunit 11 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1KZI16.2e-10796.88transcription initiation factor TFIID subunit 11 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1DFN03.1e-9890.75transcription initiation factor TFIID subunit 11 OS=Momordica charantia OX=3673 ... [more]
A0A5D3D7981.2e-9491.03Transcription initiation factor TFIID subunit 11 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S4DX733.5e-9490.58transcription initiation factor TFIID subunit 11 OS=Cucumis melo OX=3656 GN=LOC1... [more]
BLAST of CmoCh06G007540 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G20280.13.8e-5656.28TBP-associated factor 11 [more]
AT1G20000.11.6e-3847.32TBP-associated factor 11B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006809TAFII28-like protein domainPFAMPF04719TAFII28coord: 121..206
e-value: 3.0E-31
score: 107.3
IPR006809TAFII28-like protein domainCDDcd08048TAF11coord: 125..208
e-value: 1.50213E-39
score: 129.223
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 125..214
e-value: 2.9E-31
score: 109.4
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 125..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..84
NoneNo IPR availablePANTHERPTHR13218:SF19TAFII28-LIKE PROTEIN-RELATEDcoord: 1..223
IPR045127Transcription initiation factor TFIID subunit 11-likePANTHERPTHR13218TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATEDcoord: 1..223

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G007540.1CmoCh06G007540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0051123 RNA polymerase II preinitiation complex assembly
biological_process GO:0006413 translational initiation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003743 translation initiation factor activity