CmoCh06G007120 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G007120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta
Location	Cmo_Chr06: 3617334 .. 3620266 (-)
RNA-Seq Expression	CmoCh06G007120
Synteny	CmoCh06G007120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGCCATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAGTTTCAACTTCTTCCTGCATTTTTTAAGGTGGAAATCATCACACTGCTTTTGTTTGTTATTGTTATGATTATATGTTTAGCCATGAAATTATCTCTACTACGCTGCTTTTGTCTAAATTTCAGCCTATGATTATTAACGCACATAGTTTAATCATCTGGTTTCAAGTAAGAGGTCTGGTTCGACAACGCTTGCTATTCCTTAACTACTTCGTGAATACAGAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTACTTATCTTAGGGTACACGTTTTTCATTCGTCTCTAGCATGTTCATTGCTGCATCGATGCTGTCGGCTTCTTGTTTTACACTCGTTTTTCATTCATGTCTCTAGCATGTTCATTTCCTACTTGTTTCACACTTGTCGGCTTCTTCCTTTAGTACTTTGCTACAGGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGAAGCAGGTTATTCTCTTTTCTGCACCTGTTCTCCTATAACAATGTGGCAGCCACTCTAGGTTTATTCTTATGGTATAATGCTTCAGTTTAGTATTTAGAACTTAAAGTTTTAATTTGGACATATATTGTTACATTCAATTCAATTCATTCTGTAGAAGAAATTCAAGCAGCATTTTTCATTTCAGATGCCCAAAGCTCTGGGCAAGGATATTATGATCCAGTAGCATTTTATTGCTTTGAAATGAGCTTGTATATGAAAATGTTTCATAATATTTCAGCACAAGAAGTAGAAAATTTTGCATATTCAACCAAAAATAAAAATACCTAATATTTTATTGCTTTGTTAGGTTTACTTTATTAGAGTCTTAGCCCGCATTAAGGATGGAATGAAATTGCACAGTTTTGCTTCTATGAGTTTCCTTAGGCGTAGCACATACCTTTTCTTGTCAATACACTCTCTGCATGCTAAATAATTGAAATTTGGAAAGAAAAATTTCCTAGACCTTTATTCTTTGGCACCAACATTTTGTGTTCTGACTCTGTTAGAAGCTGATATGTTGGTTCACTCTCTAGGTATCACAGGTTGCCCATTACAATATTTATGGGACCAATTTACTACCAGAAGTTAAAGCACATGGTAAGATTTACTGCACCAATTCCTCTTTAAAGCTTCCAATCTCGACATGTCTTGGTATGCTGCAAGAACACAGCAAAGGATCTTTGTTGCTGGGTTTGTTTAGTGTGAAAATATCACAAATTGTCCTTTGACTTCGTTGTGGCTTATCAATGTGACTTATTTGTTTGAGCTATCTTAGCCGAACCTTCTGTGGGCTCATTATCTTACTATTCTTTGGCGTTCCATACCTATGATTCGACCAATTCGACCAATTCGACCAATGGAAAGTAGAGATTGAAATGAAAATTCTTTTGGTATCTGTAGAATAAGTAAGTATAGAAGAATACCCCAAACATTTCCAGAAACTTGGATAGAGATCAATCCTTCTGACAAACTCAAGCCTAAACAACCAAACCGTTGCTTCTCCTTCCCTTTCACTGAAAGGTGCAGTAAAAATAATCTAACATGAGAGTTTATGCTCAAAGTAGACGATATCATACCATTGTGGAGGGTCCGTGATTCCTAACATGGCATTAGAGTCAGGCTTTTAACTTAGCCATGTCAATAGAATCTTCAAGTGTCAAACAAAGAAGTTGTGAGCCTCGAAGGTGTAGTCAAAGGTGACTTAGTGTCGAACAAAGGGTGTACTTTGTTTGAGGGCTCCTGAGAAGGAGTTGAGCCTCGATTAAGAGGAGGTTGTTCGAGGGCTCTGTAGGCCTCAGGGAGACTCTATGGTATACTTTGTTCAAGGGAGGATTGTTGGGAGAGGAGTCACATATCGGCTAGTTAAGGAGAAGATCATAGTAAGGAATACTATCTCCATTGATATGAGGCCTTTTGAGAAACCAAAAGCAAAGTCATGTGAGTTTATGCTCAAAGTGGACAATATTATACTATTGTGGAGGGTCGTGGTTTCTAACAAAAATGGCATATGAGTGTTGCAAAGTGTATATTACGTGATCGTGGGAGTGCCAGACTAAGGTTCTTCTATCAAAGTGTTGTCTGTTTTTTTTAGAGTTATTGTGAGATGCCAAACCTCACTTTGGAAGAGCAAACAGGTGTTCAATCCTTTGCCAGAAAAAAAAAGAATATATTATGAAAGTACTCCTCTGTAGTCAGGGAACAGCCTAAACTATGACAAACTTCGCAATAGCATCTGTCATGCTGAAATGCATATGCATTCAAACTTGTTTTGAGACTGTTATGCTGTAGCTTTTGAGTATATGGATATTGCACCTGTTCTATAGGCTGTATAGTTTTGAATCCGTTTATTCTTGGTTTAGTCCTTTGTCAGTTTTATAGTTTTCTTTTTCTCTTTGACAACTGCACTATTATTGTAGGAATGTGCGAAGGAAAAAGCATATACACAAGAACAAGCATTAGAGTATCTTGAGACAAAAGTTTGTAAGTTAATTCAGCTAATACTCTTTGGTAAGTTAATTCAGCTAATACTCTTATGCCTAAAGCTCTTTTACTGCCAATTAACGATATTCTACAAAACCACAAGCATCTTTGCAACCACGATTAGTTCTTGTGTCCAATAATTATTTGTCAAATGTTCATGTGGACTTCTCATTTGCTGTTTGTTATTTAATTGTTATTTTCCTTTTCAAGTTAAATAACAATTGTTCTAGATGAAGAGATTCAATCTCTTCCACAAACCCTTCATTGTAAGCCTCTTCATTATGAAGGATGATGCCATGTACGGGTAA

mRNA sequence

ATGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGCCATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGAAGCAGGAATGTGCGAAGGAAAAAGCATATACACAAGAACAAGCATTAGAGTATCTTGAGACAAAAATGAAGAGATTCAATCTCTTCCACAAACCCTTCATTGTAAGCCTCTTCATTATGAAGGATGATGCCATGTACGGGTAA

Coding sequence (CDS)

ATGACAAAATCTGTAGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGCCATTGACAAGAAATTCCTTGGCCTGCCTATCAAGTCAGCCGTCGATAAAAATTAAAAAGATAGTCAAGGCCAATGATCGAATTGAATCCAGCAATGATCGTATGAGAATGCTGAGGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGAAGCAGGAATGTGCGAAGGAAAAAGCATATACACAAGAACAAGCATTAGAGTATCTTGAGACAAAAATGAAGAGATTCAATCTCTTCCACAAACCCTTCATTGTAAGCCTCTTCATTATGAAGGATGATGCCATGTACGGGTAA

Protein sequence

MTKSVGTGSKSTILMQSIWPLTRNSLACLSSQPSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYLETKMKRFNLFHKPFIVSLFIMKDDAMYG

Homology

[Close]

BLAST of CmoCh06G007120 vs. ExPASy TrEMBL
Match: A0A6J1HV90 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111466504 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 33  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYL 92
           P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYL
Sbjct: 98  PKIPIVVVLKAMG-MESIQEVVQMVGRDPRYGA---LLLPSIEECAKEKIYTQEQALEYL 157

Query: 93  ETKMKRFNLFHKP 106
           ETK+K+F  F  P
Sbjct: 158 ETKVKKFQFFSAP 166

[Close]

BLAST of CmoCh06G007120 vs. ExPASy TrEMBL
Match: A0A6J1HQP0 (DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111466504 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 33  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYL 92
           P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYL
Sbjct: 251 PKIPIVVVLKAMG-MESIQEVVQMVGRDPRYGA---LLLPSIEECAKEKIYTQEQALEYL 310

Query: 93  ETKMKRFNLFHKP 106
           ETK+K+F  F  P
Sbjct: 311 ETKVKKFQFFSAP 319

[Close]

BLAST of CmoCh06G007120 vs. ExPASy TrEMBL
Match: A0A6J1G1X8 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449942 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 33  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYL 92
           P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYL
Sbjct: 251 PKIPIVVVLKAMG-MESIQEVVQMVGRDPRYGA---LLLPSIEECAKEKIYTQEQALEYL 310

Query: 93  ETKMKRFNLFHKP 106
           ETK+K+F  F  P
Sbjct: 311 ETKVKKFQFFSAP 319

[Close]

BLAST of CmoCh06G007120 vs. ExPASy TrEMBL
Match: A0A6J1G207 (DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111449942 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 33  PSIKIKKIVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQECAKEKAYTQEQALEYL 92
           P I I  ++KA   +ES  + ++M+ R  + G    + +   +ECAKEK YTQEQALEYL
Sbjct: 98  PKIPIVVVLKAMG-MESIQEVVQMVGRDPRYGA---LLLPSIEECAKEKIYTQEQALEYL 157

Query: 93  ETKMKRFNLFHKP 106
           ETK+K+F  F  P
Sbjct: 158 ETKVKKFQFFSAP 166

[Close]

BLAST of CmoCh06G007120 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 42.7 bits (99), Expect = 2.4e-04
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 40  IVKANDRIESSNDRMRMLRRAGKIGEFVNVFVNEKQEC 78
           I+  + R +   + +R LRRAGKIGEFV+VF NEKQ C
Sbjct: 556 ILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHC 593

The following BLAST results are available for this feature:

BLAST of CmoCh06G007120 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G007120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HV90	5.3e-04	45.21	DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1HQP0	5.3e-04	45.21	DNA-directed RNA polymerase subunit beta OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G1X8	5.3e-04	45.21	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G207	5.3e-04	45.21	DNA-directed RNA polymerase subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CmoCh06G007120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45140.1	2.4e-04	55.26	nuclear RNA polymerase C2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G007120.1	CmoCh06G007120.1	mRNA