CmoCh06G006820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G006820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cmo_Chr06: 3468038 .. 3468691 (+)
RNA-Seq Expression	CmoCh06G006820
Synteny	CmoCh06G006820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTGAAGCATTTGGTTTCAGCTTTGAATGTATTGTTAACTACAAACAAGTCATCCCCTGCCAACAGCAACCACCAGCAATCAAATAGTAGAAACGTTGCGGCCAAGTCCCCTGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCAATCGCTAATATGATACGCATTATGCGACGAATTTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAATCATCCAAGAATGTGTGTCTGAGTATATCAGCTTCATTACTAGCGAGGCCAACGAGCAATGCCAAAGGGAGCAACGTAAGACAGTGACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACAATTACATTAAGCCATTAATTGTCTTTCTCAATTGCTATCGCGAGTTGGAGAGTGATCGAATCCGTACAGAACCGATCATGAGGCGCAATGTAGATTATGGACCACACGTAGGGATGATATCACCGTATGGCCAGACGTTTCAGATAGGGCACGTCCCAACAGAAATGTTTGATGCAATGGGTAGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGATAGTCAACTTTGA

mRNA sequence

ATGAATCTGAAGCATTTGGTTTCAGCTTTGAATGTATTGTTAACTACAAACAAGTCATCCCCTGCCAACAGCAACCACCAGCAATCAAATAGTAGAAACGTTGCGGCCAAGTCCCCTGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCAATCGCTAATATGATACGCATTATGCGACGAATTTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAATCATCCAAGAATGTGTGTCTGAGTATATCAGCTTCATTACTAGCGAGGCCAACGAGCAATGCCAAAGGGAGCAACGTAAGACAGTGACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACAATTACATTAAGCCATTAATTGTCTTTCTCAATTGCTATCGCGAGTTGGAGAGTGATCGAATCCGTACAGAACCGATCATGAGGCGCAATGTAGATTATGGACCACACGTAGGGATGATATCACCGTATGGCCAGACGTTTCAGATAGGGCACGTCCCAACAGAAATGTTTGATGCAATGGGTAGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGATAGTCAACTTTGA

Coding sequence (CDS)

ATGAATCTGAAGCATTTGGTTTCAGCTTTGAATGTATTGTTAACTACAAACAAGTCATCCCCTGCCAACAGCAACCACCAGCAATCAAATAGTAGAAACGTTGCGGCCAAGTCCCCTGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCAATCGCTAATATGATACGCATTATGCGACGAATTTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAATCATCCAAGAATGTGTGTCTGAGTATATCAGCTTCATTACTAGCGAGGCCAACGAGCAATGCCAAAGGGAGCAACGTAAGACAGTGACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACAATTACATTAAGCCATTAATTGTCTTTCTCAATTGCTATCGCGAGTTGGAGAGTGATCGAATCCGTACAGAACCGATCATGAGGCGCAATGTAGATTATGGACCACACGTAGGGATGATATCACCGTATGGCCAGACGTTTCAGATAGGGCACGTCCCAACAGAAATGTTTGATGCAATGGGTAGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGATAGTCAACTTTGA

Protein sequence

MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL

Homology

[Close]

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46
Identity = 103/187 (55.08%), Postives = 124/187 (66.31%), Query Frame = 0


Query: 38  SPVTGSTPASIAATNN-----EQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAK 97
           +P+T S   + A   N     +Q   C+ REQDQYMPIAN+IRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 98  EIIQECVSEYISFITSEANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRE 157
           E IQECVSEYISF+T EANE+CQREQRKT+TAED+LWAM KLGFDNY+ PL VF+N YRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 158 LESDR---IRTEPIMRRNVDYGPHVGMISP-YG----QTFQIGHVPTEMFDAMGRYYDGG 212
           +E+DR   +R EP   R    G  +G   P +G      +  G +   M    GRYY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 5.0e-42
Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 51  TNNEQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEA 110
           T+N   ++C VREQD++MPIAN+IRIMRRILP+HAKISDD+KE IQECVSEYISFIT EA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 111 NEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDR 158
           NE+CQREQRKT+TAEDVLWAM KLGFD+YI+PL ++L+ YRELE +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot
Match: Q8VYK4 (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 69/139 (49.64%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 51  TNNEQSQQCI-VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSE 110
           +  +QS + + VREQD+++PIAN+ RIM+R LP++ KI+ DAKEI+QECVSE+ISF+TSE
Sbjct: 17  SGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSE 76

Query: 111 ANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVD 170
           A+++CQRE+RKT+  +D+LWAM  LGF++Y++PL V+L  YRE+E D   T+   +    
Sbjct: 77  ASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD---TKGSAKGGDP 136

Query: 171 YGPHVGMISPYGQTFQIGH 189
                G  S  GQ  Q+ H
Sbjct: 137 NAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 76/176 (43.18%), Postives = 111/176 (63.07%), Query Frame = 0


Query: 52  NNEQSQQCI-VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEA 111
           NN+  Q  +  REQD+++PIAN+ RIM++ LP++AKIS DAKE +QECVSE+ISF+T EA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 112 NEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRI------------ 171
           +++CQ+E+RKT+  +D+LWAM  LGF++Y++PL V+L  +RE+E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 172 --RTEPIMRRNVDYGPHVGMISPYGQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSG 213
             + + +      YG   GM   Y Q  Q  H    M+ A G   D G  GG++SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGGGSDSG--GGAASG 186

[Close]

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 59/96 (61.46%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 61  VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRK 120
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKE +QECVSE+ISFITSEA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 121 TVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESD 157
           T+  +D+LWAM  LGF++YI+PL V+L  YRE+E D
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131

[Close]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.4e-116
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCI 60
           MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCI
Sbjct: 1   MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCI 60

Query: 61  VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRK 120
           VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRK
Sbjct: 61  VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRK 120

Query: 121 TVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPY 180
           TVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPY
Sbjct: 121 TVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPY 180

Query: 181 GQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 218
           GQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL
Sbjct: 181 GQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 217

[Close]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 189/214 (88.32%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 8   SALNVLLTTNKSSPA----NSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVRE 67
           SALNVLLTTNKSS A    NSNHQQSNSRNVAA SPVTGS PASIAATNNEQSQQCIVRE
Sbjct: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84

Query: 68  QDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVT 127
           QDQYMPIAN+IRIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQRKTVT
Sbjct: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144

Query: 128 AEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQT 187
           AEDVLWAMGKLGFD+YI+PL VFLN YRE ESDR+RTEPI+RRNVDYGP VGM++PYGQT
Sbjct: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204

Query: 188 FQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 218
           FQIGHVP  MFDAMG YYDGGGNGGSSSGN SQL
Sbjct: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.2e-96
Identity = 185/210 (88.10%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 8   SALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQY 67
           SALNVLLTTNKSS AN+NHQQSN RN+AA S +TGST ASIAATNN +SQQCIVREQDQY
Sbjct: 25  SALNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQY 84

Query: 68  MPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVTAEDV 127
           MPIAN+IRIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQRKTVTAEDV
Sbjct: 85  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 144

Query: 128 LWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQTFQIG 187
           LWAMGKLGFD+YI+PL VFLN YRELESDRIRTEPI+RRNVDYGP VGM+ PYGQTFQIG
Sbjct: 145 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIG 204

Query: 188 HVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 218
           HVPT MFDAMG YYDGGGNGGSSSGN SQL
Sbjct: 205 HVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 234

[Close]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.1e-95
Identity = 183/210 (87.14%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 8   SALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQY 67
           ++LNVLLTTNKSS AN+NHQQSN RN+AA S +TGST ASIAATNN +SQQCIVREQDQY
Sbjct: 38  ASLNVLLTTNKSSFANNNHQQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQY 97

Query: 68  MPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVTAEDV 127
           MPIAN+IRIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQRKTVTAEDV
Sbjct: 98  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 157

Query: 128 LWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQTFQIG 187
           LWAMGKLGFD+YI+PL VFLN YRELESDRIRTEPI+RRNVDYGP VGM+ PYGQTFQIG
Sbjct: 158 LWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIG 217

Query: 188 HVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 218
           HVPT MFDAMG YYDGGGNGGSSSGN SQL
Sbjct: 218 HVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 247

[Close]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 8.2e-80
Identity = 157/210 (74.76%), Postives = 170/210 (80.95%), Query Frame = 0


Query: 12  VLLTTNK----SSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQY 71
           +++T NK    +S  NSNH  SN       S  T     +  A NNEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 72  MPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVTAEDV 131
           MPIAN+IRIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 132 LWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQTFQIG 191
           LWAMGKLGFD+YI+PL VFLN YRE ESDRIRTEPI+RRNVDYGP VGMISPYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 192 HVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 218
           HVP  MFDAMG YY GGG GG S+GN SQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of CmoCh06G006820 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-47
Identity = 103/187 (55.08%), Postives = 124/187 (66.31%), Query Frame = 0


Query: 38  SPVTGSTPASIAATNN-----EQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAK 97
           +P+T S   + A   N     +Q   C+ REQDQYMPIAN+IRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 98  EIIQECVSEYISFITSEANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRE 157
           E IQECVSEYISF+T EANE+CQREQRKT+TAED+LWAM KLGFDNY+ PL VF+N YRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 158 LESDR---IRTEPIMRRNVDYGPHVGMISP-YG----QTFQIGHVPTEMFDAMGRYYDGG 212
           +E+DR   +R EP   R    G  +G   P +G      +  G +   M    GRYY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006820 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-43
Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 51  TNNEQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEA 110
           T+N   ++C VREQD++MPIAN+IRIMRRILP+HAKISDD+KE IQECVSEYISFIT EA
Sbjct: 46  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 105

Query: 111 NEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDR 158
           NE+CQREQRKT+TAEDVLWAM KLGFD+YI+PL ++L+ YRELE +R
Sbjct: 106 NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006820 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-43
Identity = 81/107 (75.70%), Postives = 97/107 (90.65%), Query Frame = 0


Query: 51  TNNEQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEA 110
           T+N   ++C VREQD++MPIAN+IRIMRRILP+HAKISDD+KE IQECVSEYISFIT EA
Sbjct: 17  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 76

Query: 111 NEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDR 158
           NE+CQREQRKT+TAEDVLWAM KLGFD+YI+PL ++L+ YRELE +R
Sbjct: 77  NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of CmoCh06G006820 vs. TAIR 10
Match: AT2G37060.1 (nuclear factor Y, subunit B8 )

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-32
Identity = 69/139 (49.64%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 51  TNNEQSQQCI-VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSE 110
           +  +QS + + VREQD+++PIAN+ RIM+R LP++ KI+ DAKEI+QECVSE+ISF+TSE
Sbjct: 17  SGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSE 76

Query: 111 ANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVD 170
           A+++CQRE+RKT+  +D+LWAM  LGF++Y++PL V+L  YRE+E D   T+   +    
Sbjct: 77  ASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD---TKGSAKGGDP 136

Query: 171 YGPHVGMISPYGQTFQIGH 189
                G  S  GQ  Q+ H
Sbjct: 137 NAKKDGQSSQNGQFSQLAH 152

[Close]

BLAST of CmoCh06G006820 vs. TAIR 10
Match: AT2G37060.2 (nuclear factor Y, subunit B8 )

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-32
Identity = 69/139 (49.64%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 51  TNNEQSQQCI-VREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSE 110
           +  +QS + + VREQD+++PIAN+ RIM+R LP++ KI+ DAKEI+QECVSE+ISF+TSE
Sbjct: 17  SGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSE 76

Query: 111 ANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVD 170
           A+++CQRE+RKT+  +D+LWAM  LGF++Y++PL V+L  YRE+E D   T+   +    
Sbjct: 77  ASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGD---TKGSAKGGDP 136

Query: 171 YGPHVGMISPYGQTFQIGH 189
                G  S  GQ  Q+ H
Sbjct: 137 NAKKDGQSSQNGQFSQLAH 152

The following BLAST results are available for this feature:

BLAST of CmoCh06G006820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	2.6e-46	55.08	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	5.0e-42	75.70	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q8VYK4	4.0e-31	49.64	Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.2e-30	43.18	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	1.5e-30	61.46	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CmoCh06G006820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJB5	1.4e-116	100.00	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FYN7	1.1e-97	88.32	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTC3	2.2e-96	88.10	nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KV71	1.1e-95	87.14	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A5D3CPF3	8.2e-80	74.76	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of CmoCh06G006820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	1.8e-47	55.08	Histone superfamily protein	[more]
AT5G47670.1	3.6e-43	75.70	nuclear factor Y, subunit B6	[more]
AT5G47670.2	3.6e-43	75.70	nuclear factor Y, subunit B6	[more]
AT2G37060.1	2.8e-32	49.64	nuclear factor Y, subunit B8	[more]
AT2G37060.2	2.8e-32	49.64	nuclear factor Y, subunit B8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 133..151 score: 28.11 coord: 95..113 score: 46.65 coord: 114..132 score: 32.06
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..55
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 35..182
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 54..169 e-value: 2.8E-38 score: 132.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 64..157
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 68..131 e-value: 1.3E-24 score: 86.2
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 35..182
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 98..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G006820.1	CmoCh06G006820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding