CmoCh06G006520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G006520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nucleolar protein 12
Location	Cmo_Chr06: 3287246 .. 3290907 (+)
RNA-Seq Expression	CmoCh06G006520
Synteny	CmoCh06G006520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGGGCTACAAATTTCATCTTCTCCAATTTCCATTGTTAGCCGCAATTACTTTCGACCTGTAAATTCACAGAATTCTGCAGAAAACTAACTCAGAAGAAGAGTAATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGACAACCCTTTTCGTAGGAAAGATACGAGTTTAACTCCTGTGGCGGCGGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAAGAGTAGGAAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGAGGTTTCCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAGGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATGTAAGCATTGTTTTCTATTTGTTCATTATCTTGAATTTGGAGTTCGTGGGGTTTTGTTTTTCTCAATTTATCGATCTTCAAACTTGAGAATTTTGTACTTTTTCTCTGATCAGAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGGTAATGCTTTTATATCATAATGTGACGTAATTGAATGTGATAAATGTCGCTTAATTGTATCGATATTGAATCGTTGTTCACTTGGAATCAAAATTAGAGAGAGGGATCGTGGTTTTAGGATGATCTTACTTGATTAGGGTTATACTATATGGTCGTCAGTTCAATTGGAAGTCTAAGCCAAGAAGGTACGAACGAGGTGACGGGCCCTTTTAGAGTTTGAAAGATAGGATAGGGGGTGGCTTGATTGTGATAGTAATTTCGAACATCTCTCCCCTTTACTCTTAGCGTGCACAGTTTGCTTGCATGCCGCTTTGACTCCTAGAGTTCTTTAAGAGATCATGATTTTAGGAAAGGTCCTTAGGAGAGAATTACTGGATATGATTGCTTATTCTTATTAAGACATTATATACCGTTTTTAGTGATGAAAATGAATGATTTGCAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGGTATAGTTCTTACTCTCTTTTCTTCTTCTTCTTCTTAGCTTTTCGAAGTCGAAACTTGTAGCTTTGGCTATTTCCATTCATGATCTTTATATATGTGAATTTAGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGTAACCTTTTTCTTCCCTCTTCCCTTCCTTGATGCTAAGTTATGTAAAGTTGGTTTATGGTTGTTTTATACATCTACATTTTCAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGTACGATCGGCTTTTTTGATATTAATGTTCATTCATTTAGATAGATCTGTAAGCTCATTGGTTTTCTCTCATTTTCTTCACTTTTTACTAATATATGGTTTAAATTACATGTTTGCGCACACACGAGTATGCTGTATAGGTGTATCGATATCGTGTGCGCGCACTTTCCTGTCTGTCTGGATCTAGTAGACGAGGTTGTAAATTCCGTTCGTTTGGTTGAGGAACCTGGTATTTTTATTATGCTTTTTTATAACCGGGTACCTGAGGCCTCATCTCTTGCATCAAGCTCATGGTGGATTCCGACTGGCTATGGGGAGGCTTCATCCACTTTACACCCCCACTTTTTGCATCATGTTCATGAATCATGACTAACTAATACTAGTAGTAAGGATGCGATCCTCCACCGGTTGGAGAGGAGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTTTCCCTAACAAACGCGTTTTAAAACCGTGAGGCTGACAGTGATGTGTAACGGGCCAAAGCAGAAAATATTTGTTAGCAGTGGACTTGGGCTACTACACTTCAAGTTCAGCTCAACAATGACTTTGAGTTATTAAGTTCTAACCTTCAGATTTAGTTAAATTAAAACCTTGTTCGTATTTCTAATCATCTCGAACCCTGGCTACCGAAACACTCGGTAGCAGTTAGTAAATAAAGCTAGATATCTGTTAACTTATTTTTCTCTCTATCTTCCCTGATTGTTTTTGTCACCTCTAGTCTTGAAGACAACTGCATGTTTTCCAATTGGTTTACATCTTTTTCTTTCAATTTCAATCTAAGAACAATGCATTGCTTCTATGTCTGTGCAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGCTCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGCTTAGATAGATAGGAAACACAGGAAGGAAGAAGTTGATGGTGTGGAATGAACTGAATACTCTTAGCTTTCTTTGTATTCTTTTATGTGGTTCACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATATGTTAAGAAAACATCAAATTAAAATAATAACATAAAAAAAA

mRNA sequence

CTAGGGCTACAAATTTCATCTTCTCCAATTTCCATTGTTAGCCGCAATTACTTTCGACCTGTAAATTCACAGAATTCTGCAGAAAACTAACTCAGAAGAAGAGTAATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGACAACCCTTTTCGTAGGAAAGATACGAGTTTAACTCCTGTGGCGGCGGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAAGAGTAGGAAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGAGGTTTCCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAGGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGCTCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGCTTAGATAGATAGGAAACACAGGAAGGAAGAAGTTGATGGTGTGGAATGAACTGAATACTCTTAGCTTTCTTTGTATTCTTTTATGTGGTTCACCAACTCACTTTTGAATTAAGCAAAAGTTAATATTAATCAGGTTTTATATTATTATATGTTAAGAAAACATCAAATTAAAATAATAACATAAAAAAAA

Coding sequence (CDS)

ATGGGGAAGAAGAAAACCAACGGCCCCAAAAGTTCCTCCGAAGAAGTCGCCATTGGTTCTGCTCCCTCCAGCGTTTTCGAGACTCTGTTCGGCAACGTTGGTGCTGAAAGTGATGGCGTTTCTATCTTCTCCACTGACAACCCTTTTCGTAGGAAAGATACGAGTTTAACTCCTGTGGCGGCGGTTGCTGAAAAATCTCCCAGTGGCGGCGCTGATGATCATACTATCGATGATGTAAAGAGTAGGAAGAAGAGCAAGGAGAAACGGGTTGGAATGGATTTGGATTCTGCTGAGAATGGTGTTAAAAGTTCGTCGGAAGTCAAGAAGTCGAAGAGGAAGGAGAAGTCTCGGGACCGGGAATTGGATAATGAAGTTATCGAGAAGGATGATGAAGAAAGAGGTTTCCAATCCCGAGGCGTAGTGAAGAAGAACAAAAGGAACGGTGCGGAAATCGGTTCTGAATTTAGCGGCGAATTGAAGATAGACGAACAAAGGAGTGACAGTAAACTCGGTGTGGATGTGAAGTTAACGAAAGAGAAGAAGAAGAGGAAGAGAGACGAACTGGAGAGAGAGTATGAAGCGAAGAAGTATGGTGCATCAGAAGTAGCTGAAGATGAAGTGGAAGGTTCAGGGGGCACTGTTGTTGGGAAGAAGAGGAAAGCCATGGACGATTTTTCTGAGATGTTGGTAACGAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTTTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAAAAGGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAAATAGAATCTGTTAGGATCCGTTCTGTGCCACTTGCAAATAGCAAAAAACCTAGGAAGGGAGCAATTCTTTCAAAGAAAGTCAATGAAGATGCGGACAGTTCTCATGCATATGTTGTTTTCAAAACGGAGGAATCAGCACAGGCTTCTCTGTCCCATAACATGGCTGTGTTCGCAGGAAATCATATACGTGTTGATAGGGCATGCCCGCCTCGTAAAAAGTTGAAAGTAGGAAGTTCTCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAACTATTTTGCGGAATCGAGAATGTGGGATCTAGTGTCGAAGCTGTTCGGGTCATCAGAGATCCTAATGTGAACATAGGGAAGGGTTTTGCGTATGTCTTCTTTAAAACGAAGGAAGCAGCAAATTCAGTAATTAACAATCAAAAACTACAGTTGCGTGATCGAGCACTGAGGCTTTTTCATGCCAAACCAAACTTGACATCGACCCCGCTCAAGAAACGTAATAACCCATCTACTGAAGTCGATCGCTCAGCAAAGAAAAGGGCTGTGGATTCAGGTTTAAGGACACCAGACAGCAGCAAGAGGGTAACCCCAAAAGCTACGGTTGCATCCTACCAGGGCCTGCGTGCGAGCAAACCCGGTTCCCAGAAGAAGAACCAAGCAAAAGGCAGTGGCACGAAATGGACAAAATCACATTCCAACAGTAAGGAGAAGCGAGTAGCTCACAAGAGGAGAAGACCGGAGGATTTCCCGGAGAGGACGAGTGAAAGGAAGGGGAAAAGACCGGAGAAGATGAGTGAAAGGAAGGGGAAGAGACCAGCCGTTGCCAACCGAAAGGCTGTGGCAAATGCATCGAGAAATGGCGTTGCAGCCCCGAAACAAGGCGGGGTTAAACGCAAGTCCGATAGCCGAACTCCAGAGAGCTCTCACAGAAACAAAAGAGTCAAAAGGCTTAGATAG

Protein sequence

MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVAAVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR

Homology

[Close]

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot
Match: Q5M9F1 (RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-28
Identity = 97/269 (36.06%), Postives = 138/269 (51.30%), Query Frame = 0


Query: 236 DDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKV 295
           ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A + +K 
Sbjct: 176 EERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKF 235

Query: 296 NEDADSSHAYVVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYDPKR 355
           + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S      KR
Sbjct: 236 HPDQKSINAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLA----------SETASRDKR 295

Query: 356 TVFVGNLPFDVKDEELYQLF--CGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAA 415
           +VFVGNLP+ V +  L + F  CG      S+ AVR++R+P   +G+GF YV F+  +A 
Sbjct: 296 SVFVGNLPYRVDESALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFENTDAV 355

Query: 416 NSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRN-NPSTEVDRSAKKRAVDSGLRTPDSS 475
           +  +     +L  R LR+     ++    LK++N NPS + D S  K+ ++    T    
Sbjct: 356 HLALKLNNSELMGRKLRVMR---SVNKEKLKQQNSNPSVKKDGSKSKQRLNF---TSKEG 415

Query: 476 KRVTPKATVASYQGLRASKPGSQKKNQAK 501
           K  +  A +     L   K G +KK Q K
Sbjct: 416 KSHSKNAFIGEKAVLMKKKKGQKKKGQTK 422

[Close]

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot
Match: O13741 (Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop12 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 7.4e-27
Identity = 115/386 (29.79%), Postives = 189/386 (48.96%), Query Frame = 0


Query: 166 SDSKLGVDVKLTKEKKKRK----RDELEREY----------EAKKYGASEVAEDEVEGSG 225
           SD+K   ++K   +KKK+K     D++E +Y          E  K  A  + ++E +   
Sbjct: 72  SDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPA 131

Query: 226 GTVVGKKRKAMDDF-SEMLVTKEGFDDESKLLRTVFVGNLPLKV-----KKKALGKEFSQ 285
              V ++R + +D  SE  V ++  ++  K  +TVFV NLP +V       K L K F Q
Sbjct: 132 KQSVLEERTSQEDVKSEREVAEKLANELEKSDKTVFVNNLPARVVTNKGDYKDLTKHFRQ 191

Query: 286 FGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVF 345
           FG ++S+R RS+  + +  PRK A   KK + + D+ +AY+VF+   SA+++LS N  +F
Sbjct: 192 FGAVDSIRFRSLAFSEA-IPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSALSLNGTMF 251

Query: 346 AGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLF--CGIENVGSS 405
              H+RVD    P  +         D KR VFVGNL F+ ++E L++ F  CG      S
Sbjct: 252 MDRHLRVDSVSHPMPQ---------DTKRCVFVGNLAFEAEEEPLWRYFGDCG------S 311

Query: 406 VEAVRVIRDPNVNIGKGFAYVFFK-TKEAANSVINNQKLQLRDRALRLFHAKPNL-TSTP 465
           ++ VR++RDP  N+GKGFAY+ FK T     +++ N+K     R LR+  AK     S  
Sbjct: 312 IDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAKSTKPKSIT 371

Query: 466 LKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASKPGSQKK--NQA 523
             KR +  T   +   ++ +         +  +  +  +  ++      P ++KK   + 
Sbjct: 372 RSKRGDEKTRTLQGRARKLIGKA-----GNALLQQELALEGHRAKPGENPLAKKKVNKKR 431

[Close]

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot
Match: P42696 (RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-23
Identity = 115/380 (30.26%), Postives = 181/380 (47.63%), Query Frame = 0


Query: 141 VKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYG-A 200
           +KK KRN  E   E + +++    +  +K        K K K+K    E++   ++   A
Sbjct: 79  IKKTKRNEEE---ESTSQIERPLSQEPAK--------KVKAKKKHTNAEKKLADRESALA 138

Query: 201 SEVAEDEVEGSGGT--------VVGKKRKAMDDFSEMLVT---KEGFDDESKLL---RTV 260
           S   E+E+    G         V    RK +DD  + +V+   K   + E + L   RTV
Sbjct: 139 SADLEEEIHQKQGQKRKNSQPGVKVADRKILDDTEDTVVSQRKKIQINQEEERLKNERTV 198

Query: 261 FVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY 320
           FVGNLP+   KK L   F ++G+IESVR RS+  A     +K A + +K++ D  + +AY
Sbjct: 199 FVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAY 258

Query: 321 VVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFD 380
           VVFK E +A  +L  N A  A G  IRVD A     +           KR+VFVGNLP+ 
Sbjct: 259 VVFKEESAATQALKRNGAQIADGFRIRVDLASETSSR----------DKRSVFVGNLPYK 318

Query: 381 VKDE--ELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ 440
           V++   E + L CG      S+ AVR++RD    IGKGF YV F+  ++ +  +     +
Sbjct: 319 VEESAIEKHFLDCG------SIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSE 378

Query: 441 LRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATVAS 500
           L  R LR+     ++     K++N+     + S  K+ ++   +T +      PK+    
Sbjct: 379 LMGRKLRVMR---SVNKEKFKQQNSNPRLKNVSKPKQGLNFTSKTAEGH----PKSLFIG 424

[Close]

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot
Match: Q8C5L7 (RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=2)

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-23
Identity = 110/347 (31.70%), Postives = 172/347 (49.57%), Query Frame = 0


Query: 113 KEKSRDRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGV 172
           +E S+ R+LD+   + DDEE        V + K+    +  E S ++K+ ++ SD+    
Sbjct: 74  QETSKKRKLDD---DDDDEEES------VSQTKK---PVLQEPSRKVKV-KKLSDA---- 133

Query: 173 DVKLTKEKKKRKRDELERE-YEAKKYGASEVAEDEVEGSGGTVVGKKRK-AMDDFSEMLV 232
           D +L   +      +LE E ++ +  G    ++   + + G  +      A D      +
Sbjct: 134 DKRLANRESALASADLEEELHQDQGQGRRRRSQSRGKVADGEALDVALSLAKDGGQRTKI 193

Query: 233 TKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAI 292
                ++  K  RTVFVGNLP+   KK L   F ++G++ESVR RSV  A     +K A 
Sbjct: 194 PVNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAA 253

Query: 293 LSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFA-GNHIRVDRACPPRKKLKVGSSPI 352
           + +K + D  S +AYVVFK E +A  +L  N A  A G  IRVD A          S   
Sbjct: 254 IKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLA----------SETA 313

Query: 353 YDPKRTVFVGNLPFDVKDEELYQLF--CGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFK 412
              KR+VFVGNLP+ ++D  L + F  CG      S+ AVR++R+P   +G+GF YV F+
Sbjct: 314 SRDKRSVFVGNLPYKIEDSALEEHFLDCG------SIVAVRIVRNPLTGVGRGFGYVLFE 373

Query: 413 TKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRN-NPSTEVD 454
             +A +  +     +L  R LR+     ++    LK++N NPS + D
Sbjct: 374 NTDAVHLALKLNNSELMGRKLRVMR---SVNKEKLKQQNSNPSLKKD 384

[Close]

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot
Match: Q5AHI7 (Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NOP12 PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-20
Identity = 130/471 (27.60%), Postives = 216/471 (45.86%), Query Frame = 0


Query: 83  KKSKEKRVGMD-LDSAENGVKSSSEVKKSKRKEKSRDRELDNEVIEKDDEERGFQSRGVV 142
           K +++  V  D L   +  V    +V   K++    +  L+    E D+EE  +      
Sbjct: 23  KNTRDGPVSKDELVKKQRTVIKIPKVTAPKQQTNENESTLNQSANESDEEEEEYND---- 82

Query: 143 KKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASE 202
           + N+ + ++   +     K D++  + +     KL  E+ + ++DE +   EAK   +S+
Sbjct: 83  ESNEGDDSDDAEQTEPTSKNDDENENLEAQYFDKLLSEQNE-EQDESKESSEAK---SSK 142

Query: 203 VAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPL-----KVKK 262
           VAE+  +    T V  K K ++                K  RTVFVGN+P      K+  
Sbjct: 143 VAEERTKAKVATTVDLKEKELE----------------KADRTVFVGNVPADVITSKIIA 202

Query: 263 KALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQA 322
           K     F  +G+I+S+R RS+   +   PRK A   K +++  DS +AY+V+K + ++ A
Sbjct: 203 KNFKNLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIA 262

Query: 323 SLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCG 382
           +   N  VF  +H+RVD    P  K         D KRT+FVGNL F+ K+E L++ F  
Sbjct: 263 AKELNATVFEDHHLRVDHVSHPAPK---------DNKRTIFVGNLDFEEKEETLWKYF-- 322

Query: 383 IENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANS--VINNQKL----QLRDRALRL 442
              +   VE+VR+IRD   N+GKGFA V FK   + N   ++N++ L    Q + R LR+
Sbjct: 323 NSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVNKALLLNDKPLETGTQKKGRKLRI 382

Query: 443 FHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASK 502
             AK N   + +    +P+   ++  K  A  S  +  D+ K    +A     +  R++ 
Sbjct: 383 SRAKSNAKPSLM----SPNHFDNQKKKFAAGKSQQKLNDNQKTKIGRAQSTLGKADRSTV 442

Query: 503 PGSQK-----KNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERK 537
             +++     +   KG   K  K     K+ +    R R   F E   ERK
Sbjct: 443 GKAKRIILEGQRATKGEAIKGIKGSKKGKKVKKPRIRERSTKFKE---ERK 450

[Close]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL
Match: A0A6J1E378 (nucleolar protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111430358 PE=4 SV=1)

HSP 1 Score: 1106.7 bits (2861), Expect = 0.0e+00
Identity = 597/597 (100.00%), Postives = 597/597 (100.00%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60
           MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA
Sbjct: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60

Query: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPKATV 480

Query: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP 540
           ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP
Sbjct: 481 ASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKRP 540

Query: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 598
           EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR
Sbjct: 541 EKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 597

[Close]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL
Match: A0A6J1KUP0 (nucleolar protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111498364 PE=4 SV=1)

HSP 1 Score: 1071.6 bits (2770), Expect = 1.1e-309
Identity = 584/598 (97.66%), Postives = 588/598 (98.33%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTPVA 60
           MGKKKTN PKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFST+NPFRRKDTS TP+A
Sbjct: 1   MGKKKTNDPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTENPFRRKDTSSTPLA 60

Query: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRDRE 120
           AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSS+VKKSKRK+KSRDRE
Sbjct: 61  AVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSQVKKSKRKDKSRDRE 120

Query: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180
           LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK
Sbjct: 121 LDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTKEK 180

Query: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240
           KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK
Sbjct: 181 KKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESK 240

Query: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300
           LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD
Sbjct: 241 LLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDAD 300

Query: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360
           SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN
Sbjct: 301 SSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGN 360

Query: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420
           LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK
Sbjct: 361 LPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQK 420

Query: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDR-SAKKRAVDSGLRTPDSSKRVTPKAT 480
           LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDR SAKKRAVDSGLRTPDSSKR   KAT
Sbjct: 421 LQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSSAKKRAVDSGLRTPDSSKRA--KAT 480

Query: 481 VASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKGKR 540
           VASYQGLRASKP SQKKNQAKGSGTKWTKSHSNSKEKRV HKRRRPEDFPE TSERKGKR
Sbjct: 481 VASYQGLRASKPVSQKKNQAKGSGTKWTKSHSNSKEKRVDHKRRRPEDFPESTSERKGKR 540

Query: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRLR 598
           PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKR R
Sbjct: 541 PEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVKRFR 596

[Close]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL
Match: A0A6J1CWE3 (nucleolar protein 12 OS=Momordica charantia OX=3673 GN=LOC111014841 PE=4 SV=1)

HSP 1 Score: 780.8 bits (2015), Expect = 4.1e-222
Identity = 457/630 (72.54%), Postives = 501/630 (79.52%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRK----DTSL 60
           MGKKKT+ PK+  E +A  SA SSVFETLFGNVG +S GVSIFS+DNPFRR+    D+  
Sbjct: 1   MGKKKTSDPKNPREAMASLSASSSVFETLFGNVGVQSGGVSIFSSDNPFRRRHQAADSDS 60

Query: 61  TPVAAVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKS 120
            P AA AE++P  G++DH +DDVKS K  KEKR G DL SAE   KSSSE+KKSKRKEK+
Sbjct: 61  IP-AAAAEETPGAGSNDHIVDDVKSLKNGKEKRAGNDLGSAEEASKSSSEIKKSKRKEKN 120

Query: 121 RD-RELDNEVIEKDDEER---GFQSRGVVKKNKRNGAEIGS----------EFSGELKID 180
           RD R+L N  IE++  E    G QS GV+KKNKR G+  GS          EFSG LK++
Sbjct: 121 RDHRDLGNGAIEEEGGENGGLGSQSLGVLKKNKRKGSASGSEINDTKETSPEFSGALKVE 180

Query: 181 EQ-------------RSDSKLGVDVKLTKEKKKRKRDELEREYEAKKYGASEVAEDEVEG 240
           EQ             R+DSKLG   KL KEKKKRKRDELEREYEA+KYGASEVAED  EG
Sbjct: 181 EQSNRKLNPRSKTGERTDSKLGEVGKLMKEKKKRKRDELEREYEARKYGASEVAEDGEEG 240

Query: 241 SGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEI 300
           SGG V GKKRKA+DD SEMLV+KEGFDDESKLLRTVFVGNLPLKVKKKALGKEFS+FGEI
Sbjct: 241 SGGNVAGKKRKALDDPSEMLVSKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSRFGEI 300

Query: 301 ESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNH 360
           ESVRIRSVPLANSKKPRKGAILSKKVNE A+SSHAY+VFK  ESAQASLSHNMAVFAGNH
Sbjct: 301 ESVRIRSVPLANSKKPRKGAILSKKVNESAESSHAYIVFKMVESAQASLSHNMAVFAGNH 360

Query: 361 IRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRV 420
           IRVDRACPPRKKLKVGS+PIYDPKRTVFVGNLPFDVKDEELYQLFCGI+N+G+SVEAVRV
Sbjct: 361 IRVDRACPPRKKLKVGSAPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDNLGASVEAVRV 420

Query: 421 IRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPS 480
           IRDPNVNIGKGFAYVFFKT+EAANSV+N QKL+LRDR+LRLFHA PNL STPLKKR+ P 
Sbjct: 421 IRDPNVNIGKGFAYVFFKTREAANSVVNKQKLELRDRSLRLFHANPNLVSTPLKKRSRPP 480

Query: 481 TEVDRS-AKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASKPGS-QKKNQAKGSGTKWT 540
           TE DR+ AKK AV  G  TPDSSKR TPK+T ASYQGLR+SK GS QKK   K +G KW 
Sbjct: 481 TEADRTPAKKMAVGPGSWTPDSSKRATPKSTPASYQGLRSSKTGSAQKKTGTKRTGLKWP 540

Query: 541 KSHSNSKEKRVAHKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGV 598
           KS+SNSKEK V HKR               K+PEK  ERKGKRPAVANRKA A AS+NG 
Sbjct: 541 KSNSNSKEKPVDHKR---------------KKPEKTPERKGKRPAVANRKAEARASKNGG 600

[Close]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL
Match: A0A5A7UHL8 (Nucleolar protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001480 PE=4 SV=1)

HSP 1 Score: 755.7 bits (1950), Expect = 1.4e-214
Identity = 437/603 (72.47%), Postives = 486/603 (80.60%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDT-SLTPV 60
           MGK K    K+  +E+   + P SVF+TLFG+ G E+  VSIFS+DNPFRRKD+ S++P 
Sbjct: 1   MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPTVSIFSSDNPFRRKDSDSISPP 60

Query: 61  AAVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKR--KEKSR 120
            A                   SR K KEKRVG+DLDS E GVK+SSE+KKSK+  KEKSR
Sbjct: 61  LA-----------------ENSRTKGKEKRVGIDLDSTE-GVKTSSEIKKSKKKEKEKSR 120

Query: 121 DRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLT 180
           DRELDN     DD ERGF+S+G +K N++ G  +GSE S + +  ++   SKLG +VKL 
Sbjct: 121 DRELDN---VDDDGERGFESQGGLKDNRKKGTALGSETSEKSRGFDR---SKLGENVKLM 180

Query: 181 KEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDD 240
           KE+KKRKRDELEREYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEMLVTKEGFDD
Sbjct: 181 KERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDD 240

Query: 241 ESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKV 300
           ESKLLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+
Sbjct: 241 ESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKL 300

Query: 301 NEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRT 360
           NE ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRT
Sbjct: 301 NEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRT 360

Query: 361 VFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSV 420
           VFVGNLPFDVKDEELYQLFCGI+ +GSSVEAVRVIRDP VN+GKGFAYVFFKT+EAANSV
Sbjct: 361 VFVGNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSV 420

Query: 421 INNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRV 480
           +NNQKL+LR R LRLFHAK N TSTP KKRN P TE D + AKK AVDSGL TPDSSKRV
Sbjct: 421 VNNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRV 480

Query: 481 TPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSE 540
           TPKAT ASYQGLRASK GSQKK   KGS TKW KSHSNSKEK + HK+R           
Sbjct: 481 TPKATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKR----------- 540

Query: 541 RKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVK 598
              K PEK SERKGKRPAVANRKAVANA++NG+A PKQ G+KRKSDSR+P SSHRNKRVK
Sbjct: 541 ---KGPEKTSERKGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVK 565

[Close]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL
Match: A0A1S3BK91 (nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 2.4e-214
Identity = 436/603 (72.31%), Postives = 485/603 (80.43%), Query Frame = 0


Query: 1   MGKKKTNGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDT-SLTPV 60
           MGK K    K+  +E+   + P SVF+TLFG+ G E+  VSIFS+DNPFRRKD+ S++P 
Sbjct: 1   MGKNKITDLKNPPDEIPTVATPFSVFDTLFGSAGVENPSVSIFSSDNPFRRKDSDSISPP 60

Query: 61  AAVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKR--KEKSR 120
            A                   SR K KEKRVG+DLDS E GVK+SSE+KKSK+  KEKSR
Sbjct: 61  LA-----------------ENSRTKGKEKRVGIDLDSTE-GVKTSSEIKKSKKKEKEKSR 120

Query: 121 DRELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLT 180
           DRELDN     DD ERGF+S+G +K N++ G  +GSE S + +  ++   SKLG +VKL 
Sbjct: 121 DRELDN---VDDDGERGFESQGGLKDNRKKGTALGSETSEKSRGFDR---SKLGENVKLM 180

Query: 181 KEKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDD 240
           KE+KKRKRDELEREYEAKKYG S+VAEDEVEGSGG VVGKKRKA+DD SEMLVTKEGFDD
Sbjct: 181 KERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDD 240

Query: 241 ESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVP--LANSKKPRKGAILSKKV 300
           ESKLLRTVFVGNLPLKVKKKAL KEFSQFGEI+SVRIRSVP  +ANSKKPRKGAI+SKK+
Sbjct: 241 ESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKL 300

Query: 301 NEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRT 360
           NE ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPP KKLKVG+ PIYDPKRT
Sbjct: 301 NEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRT 360

Query: 361 VFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSV 420
           VFVGNLPFDVKDEELYQLFCGI+ +GSSVEAVRVIRDP VN+GKGFAYVFFKT+EA NSV
Sbjct: 361 VFVGNLPFDVKDEELYQLFCGIDTMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAVNSV 420

Query: 421 INNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRS-AKKRAVDSGLRTPDSSKRV 480
           +NNQKL+LR R LRLFHAK N TSTP KKRN P TE D + AKK AVDSGL TPDSSKRV
Sbjct: 421 VNNQKLELRGRTLRLFHAKTNPTSTPFKKRNRPPTEADHTPAKKNAVDSGLGTPDSSKRV 480

Query: 481 TPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSE 540
           TPKAT ASYQGLRASK GSQKK   KGS TKW KSHSNSKEK + HK+R           
Sbjct: 481 TPKATNASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKR----------- 540

Query: 541 RKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQGGVKRKSDSRTPESSHRNKRVK 598
              K PEK SERKGKRPAVANRKAVANA++NG+A PKQ G+KRKSDSR+P SSHRNKRVK
Sbjct: 541 ---KGPEKTSERKGKRPAVANRKAVANATKNGIATPKQAGLKRKSDSRSPGSSHRNKRVK 565

[Close]

BLAST of CmoCh06G006520 vs. TAIR 10
Match: AT5G46840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 375.9 bits (964), Expect = 5.9e-104
Identity = 269/599 (44.91%), Postives = 349/599 (58.26%), Query Frame = 0


Query: 1   MGKKKT--NGPKSSSEEVAIGSAPSSVFETLFGNVGAESDGVSIFSTDNPFRRKDTSLTP 60
           MGKKK+    P+S ++E        ++F TLF      S   S+FS DNPFRR       
Sbjct: 1   MGKKKSKVTEPESQNDE------SQTIFSTLFSGEVESSGFASLFSADNPFRR------- 60

Query: 61  VAAVAEKSPSGGADDHTIDDVKSRKKSKEKRVGMDLDSAENGVKSSSEVKKSKRKEKSRD 120
                 K P    +    D+ K  K++ E       +  E       + KKSK+++K  D
Sbjct: 61  ------KQPQEIKESSIPDEKKGDKRNAEN------EEEEEETDLPVKTKKSKKEKKLTD 120

Query: 121 RELDNEVIEKDDEERGFQSRGVVKKNKRNGAEIGSEFSGELKIDEQRSDSKLGVDVKLTK 180
              + E I +  EE G                                         L  
Sbjct: 121 SGDEKETISEAVEESG-----------------------------------------LVS 180

Query: 181 EKKKRKRDELEREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDE 240
           ++KKRKRDE+E EYE KKYG+ E+ E +        VG+KRK  D+ ++ +V+KEGFDDE
Sbjct: 181 KRKKRKRDEIENEYETKKYGSVEMKEKK--------VGEKRKKADEVADTMVSKEGFDDE 240

Query: 241 SKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNED 300
           SKLLRTVFVGNLPLKVKKK + KEFS+FGE+ESVRIRSVP+ +SK+ RKGAI+ K++NE 
Sbjct: 241 SKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEK 300

Query: 301 ADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLK-VGSSPIYDPKRTVF 360
           A S HAYVVF+TE+SA ASL+HNM++  GNH+RVDRACPPRKK K    + +YDPKRTVF
Sbjct: 301 ASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVF 360

Query: 361 VGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVIN 420
           +GNLPFDVKDEE+YQLF G  N+ +S+EAVRVIRDP++NIGKG AYV FKT+EAAN V+ 
Sbjct: 361 MGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLVLK 420

Query: 421 NQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVDRSAKKRAVDSGLRTPDSSKRVTPK 480
              L+LR+R LR+   KP+   TP K+++NPS E    A+KR     + TP      T K
Sbjct: 421 KGYLKLRERELRISRVKPD---TPSKRKSNPS-EAYSPAQKRLQKDKVVTPTP----TGK 480

Query: 481 ATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNSKEKRVAHKRRRPEDFPERTSERKG 540
           A + SYQG+RASK G  KK       T + KS + +K         RP       +++ G
Sbjct: 481 ANL-SYQGVRASKSGDDKK-------TPYQKSSAQTK--------MRPRGSSSNDNKKSG 500

Query: 541 KRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQ-GGVKRKSDSRTPESSHRNKRVKR 596
                  ER  KRPAVA RKA ANA  +  +  K+  G KRK ++RTPES  + K+ KR
Sbjct: 541 NN-SASKERSQKRPAVAARKAKANAKGSKESGGKRFAGTKRKQENRTPESFSKKKKTKR 500

[Close]

BLAST of CmoCh06G006520 vs. TAIR 10
Match: AT5G46840.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 347.1 bits (889), Expect = 2.9e-95
Identity = 211/383 (55.09%), Postives = 267/383 (69.71%), Query Frame = 0


Query: 215 VGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRI 274
           VG+KRK  D+ ++ +V+KEGFDDESKLLRTVFVGNLPLKVKKK + KEFS+FGE+ESVRI
Sbjct: 6   VGEKRKKADEVADTMVSKEGFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRI 65

Query: 275 RSVPLANSKKPRKGAILSKKVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDR 334
           RSVP+ +SK+ RKGAI+ K++NE A S HAYVVF+TE+SA ASL+HNM++  GNH+RVDR
Sbjct: 66  RSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDR 125

Query: 335 ACPPRKKLK-VGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDP 394
           ACPPRKK K    + +YDPKRTVF+GNLPFDVKDEE+YQLF G  N+ +S+EAVRVIRDP
Sbjct: 126 ACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDP 185

Query: 395 NVNIGKGFAYVFFKTKEAANSVINNQKLQLRDRALRLFHAKPNLTSTPLKKRNNPSTEVD 454
           ++NIGKG AYV FKT+EAAN V+    L+LR+R LR+   KP+   TP K+++NPS E  
Sbjct: 186 HLNIGKGIAYVLFKTREAANLVLKKGYLKLRERELRISRVKPD---TPSKRKSNPS-EAY 245

Query: 455 RSAKKRAVDSGLRTPDSSKRVTPKATVASYQGLRASKPGSQKKNQAKGSGTKWTKSHSNS 514
             A+KR     + TP      T KA + SYQG+RASK G  KK       T + KS + +
Sbjct: 246 SPAQKRLQKDKVVTPTP----TGKANL-SYQGVRASKSGDDKK-------TPYQKSSAQT 305

Query: 515 KEKRVAHKRRRPEDFPERTSERKGKRPEKMSERKGKRPAVANRKAVANASRNGVAAPKQ- 574
           K         RP       +++ G       ER  KRPAVA RKA ANA  +  +  K+ 
Sbjct: 306 K--------MRPRGSSSNDNKKSGNN-SASKERSQKRPAVAARKAKANAKGSKESGGKRF 363

Query: 575 GGVKRKSDSRTPESSHRNKRVKR 596
            G KRK ++RTPES  + K+ KR
Sbjct: 366 AGTKRKQENRTPESFSKKKKTKR 363

[Close]

BLAST of CmoCh06G006520 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-09
Identity = 63/216 (29.17%), Postives = 87/216 (40.28%), Query Frame = 0


Query: 205 DEVEGSGGTVVGKKRKAMDDF-SEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEF 264
           +E EG  G++ G      + F SE  V      +E+KL    FVGNLP  V  +AL   F
Sbjct: 78  EEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKL----FVGNLPYDVDSQALAMLF 137

Query: 265 SQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY---VVFKTEESAQASLSH 324
            Q G +E                   I     N D D S  +    +   EE+ +A    
Sbjct: 138 EQAGTVE-------------------ISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 197

Query: 325 NMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDVKDEELYQLFCGIENV 384
           N     G  + V+RA  PR         +YD    ++VGNLP+DV    L +LF      
Sbjct: 198 NSFEVNGRRLTVNRAA-PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF---SEH 257

Query: 385 GSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVI 417
           G  V+A RV+ D      +GF +V    +   N  I
Sbjct: 258 GKVVDA-RVVSDRETGRSRGFGFVQMSNENEVNVAI 265

[Close]

BLAST of CmoCh06G006520 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-09
Identity = 69/246 (28.05%), Postives = 100/246 (40.65%), Query Frame = 0


Query: 189 EREYEAKKYGASEVAEDEVEGSGGTVVGKKRKAMDDFSEMLVTKEGFDDESKLLRTVFVG 248
           E E   +    SE  E E + S G  V +  ++  D SE  V++     E      +FVG
Sbjct: 97  ETENSLESQDVSEGDESEGDASEGD-VSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVG 156

Query: 249 NLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSKKVNEDADSSHAY--- 308
           NL   V  +AL   F Q G +E                   I     N + D S  +   
Sbjct: 157 NLAYDVNSQALAMLFEQAGTVE-------------------IAEVIYNRETDQSRGFGFV 216

Query: 309 VVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPKRTVFVGNLPFDV 368
            +   +E+  A    N     G  + V++A  PR      +  +Y+P   V+VGNLP+DV
Sbjct: 217 TMSSVDEAETAVEKFNRYDLNGRLLTVNKAA-PRGSRPERAPRVYEPAFRVYVGNLPWDV 276

Query: 369 KDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAANSVINNQKLQ-LR 428
            +  L QLF      G  VEA RV+ D      +GF +V     +  N  I+    Q L 
Sbjct: 277 DNGRLEQLF---SEHGKVVEA-RVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 317

Query: 429 DRALRL 431
            RA+R+
Sbjct: 337 GRAIRV 317

[Close]

BLAST of CmoCh06G006520 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-08
Identity = 58/207 (28.02%), Postives = 87/207 (42.03%), Query Frame = 0


Query: 234 GFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPLANSKKPRKGAILSK 293
           GFD  +   R+V+VGN+  +V +  L + F+  G +ES                    SK
Sbjct: 52  GFDPST--CRSVYVGNIHTQVTEPLLQEIFTSTGPVES--------------------SK 111

Query: 294 KVNEDADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPRKKLKVGSSPIYDPK 353
            + +D  S      F    +A A LS N     G  I+V+ A    ++    S       
Sbjct: 112 LIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSS------H 171

Query: 354 RTVFVGNLPFDVKDEELYQLFCGIENVGSSVEAVRVIRDPNVNIGKGFAYVFFKTKEAAN 413
             +FVG+L  +V D  LYQ F    +V SS    RV+ D      +GF +V F+ ++ A 
Sbjct: 172 FNIFVGDLSPEVTDATLYQSF----SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 226

Query: 414 SVINNQKLQ-LRDRALRLFHAKPNLTS 440
           + IN    + L  R +R   A    TS
Sbjct: 232 TAINEMNGKWLSSRQIRCNWATKGATS 226

The following BLAST results are available for this feature:

BLAST of CmoCh06G006520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5M9F1	1.8e-28	36.06	RNA-binding protein 34 OS=Rattus norvegicus OX=10116 GN=Rbm34 PE=1 SV=1	[more]
O13741	7.4e-27	29.79	Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]
P42696	4.9e-23	30.26	RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 SV=2	[more]
Q8C5L7	6.5e-23	31.70	RNA-binding protein 34 OS=Mus musculus OX=10090 GN=Rbm34 PE=1 SV=2	[more]
Q5AHI7	1.0e-20	27.60	Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=2375...	[more]

BLAST of CmoCh06G006520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E378	0.0e+00	100.00	nucleolar protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111430358 PE=4 SV=1	[more]
A0A6J1KUP0	1.1e-309	97.66	nucleolar protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111498364 PE=4 SV=1	[more]
A0A6J1CWE3	4.1e-222	72.54	nucleolar protein 12 OS=Momordica charantia OX=3673 GN=LOC111014841 PE=4 SV=1	[more]
A0A5A7UHL8	1.4e-214	72.47	Nucleolar protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139...	[more]
A0A1S3BK91	2.4e-214	72.31	nucleolar protein 12 OS=Cucumis melo OX=3656 GN=LOC103490769 PE=4 SV=1	[more]

BLAST of CmoCh06G006520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46840.1	5.9e-104	44.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46840.2	2.9e-95	55.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	1.4e-09	29.17	chloroplast RNA-binding protein 31B	[more]
AT4G24770.1	2.4e-09	28.05	31-kDa RNA binding protein	[more]
AT3G14100.1	7.9e-08	28.02	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 178..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 486..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..597
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 520..552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 177..594
None	No IPR available	PANTHER	PTHR23236:SF25	RNA-BINDING PROTEIN 34	coord: 177..594
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 355..431 e-value: 1.2E-15 score: 68.0 coord: 244..333 e-value: 2.6E-10 score: 50.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 356..428 e-value: 9.7E-11 score: 41.4 coord: 245..285 e-value: 1.2E-5 score: 25.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 354..435 score: 16.227247
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 243..337 score: 13.157274
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 345..457 e-value: 1.6E-19 score: 71.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 240..342 e-value: 1.1E-17 score: 65.8
IPR034220	RBM34, RNA recognition motif 1	CDD	cd12394	RRM1_RBM34	coord: 243..333 e-value: 4.99718E-39 score: 136.236
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 348..443
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 238..345

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G006520.1	CmoCh06G006520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding