CmoCh06G006020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G006020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein-tyrosine-phosphatase PTP1
LocationCmo_Chr06: 2968312 .. 2968939 (-)
RNA-Seq ExpressionCmoCh06G006020
SyntenyCmoCh06G006020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAATTTCCGGTTTCCGCCATTGTTAGTTACCGATCAATTACTTTCTACCATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGTGGAATGATGAATCTATTGTTGGTTACTGGTAAATTACTTTCTACCATGACAAAATCTGTAGGAACGGAAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTACCAGTGTTTAGTGACGATCCTAATGCAATCGATCCTATGTTATAATCTTCATGCTCTGTTGTCTCATTGTGAATTCAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATGTATTAACCCTGTAAGTTCAAGTACCATTCAAGCCTCTGTGCTAAAATTTTTGTTTTACTGAATTTTTTATTTGAAAACTAAAAGTTTTTCATTATTAGTTAGTCCAATTTGATAGCTGAATTGTTGTATGAATATTTTCAGTTGA

mRNA sequence

ATGCTGAATTTCCGGTTTCCGCCATTGTTAGTTACCGATCAATTACTTTCTACCATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATGTATTAACCCTTTGA

Coding sequence (CDS)

ATGCTGAATTTCCGGTTTCCGCCATTGTTAGTTACCGATCAATTACTTTCTACCATGACAAAATCTGTTGGAACGGGAAGCAAGTCGACGATCCTAATGCAATCGATTTGGACATTGACAAGCAATTCCTTGGCCTTCCTCTATCAAGTCAGCCGTATTCAACTTCTTCCTGAATTTTTGAAGGCCCAGAGAATAGCTGCATCGGATATGAGGAGAAATTGCTCTGTGGCTCTTGGCAATGTCAACATCAGTAAAAATCGTTACACGGATGTATTAACCCTTTGA

Protein sequence

MLNFRFPPLLVTDQLLSTMTKSVGTGSKSTILMQSIWTLTSNSLAFLYQVSRIQLLPEFLKAQRIAASDMRRNCSVALGNVNISKNRYTDVLTL
Homology
[Close]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match: A0A6J1IKU0 (protein-tyrosine-phosphatase PTP1 OS=Cucurbita maxima OX=3661 GN=LOC111477151 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 60  LKAQRIAASDMRRNCSVALGNVNISKNRYTDVL 93
           L+AQRI ASDM++NCSVAL NVNISKNRYTDVL
Sbjct: 121 LQAQRITASDMKKNCSVALDNVNISKNRYTDVL 153

[Close]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match: A0A6J1F227 (protein-tyrosine-phosphatase PTP1 OS=Cucurbita moschata OX=3662 GN=LOC111439047 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.9e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 60  LKAQRIAASDMRRNCSVALGNVNISKNRYTDVL 93
           L+AQRI ASDM++NCSVAL NVNISKNRYTDVL
Sbjct: 121 LQAQRITASDMKKNCSVALDNVNISKNRYTDVL 153

[Close]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match: A0A1S4E3A2 (protein-tyrosine-phosphatase PTP1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500065 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 60  LKAQRIAASDMRRNCSVALGNVNISKNRYTDVL 93
           L+A+RI ASDMRR+CSVAL NVN++KNRY DVL
Sbjct: 117 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 149

[Close]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match: A0A1S3C081 (protein-tyrosine-phosphatase PTP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494974 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 60 LKAQRIAASDMRRNCSVALGNVNISKNRYTDVL 93
          L+A+RI ASDMRR+CSVAL NVN++KNRY DVL
Sbjct: 62 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 94

[Close]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match: A0A5D3CEC2 (Protein-tyrosine-phosphatase PTP1-like isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00470 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 60 LKAQRIAASDMRRNCSVALGNVNISKNRYTDVL 93
          L+A+RI ASDMRR+CSVAL NVN++KNRY DVL
Sbjct: 57 LQAKRITASDMRRSCSVALDNVNVNKNRYMDVL 89

The following BLAST results are available for this feature:
BLAST of CmoCh06G006020 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IKU09.9e-0684.85protein-tyrosine-phosphatase PTP1 OS=Cucurbita maxima OX=3661 GN=LOC111477151 PE... [more]
A0A6J1F2279.9e-0684.85protein-tyrosine-phosphatase PTP1 OS=Cucurbita moschata OX=3662 GN=LOC111439047 ... [more]
A0A1S4E3A23.2e-0475.76protein-tyrosine-phosphatase PTP1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
A0A1S3C0813.2e-0475.76protein-tyrosine-phosphatase PTP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A5D3CEC23.2e-0475.76Protein-tyrosine-phosphatase PTP1-like isoform X4 OS=Cucumis melo var. makuwa OX... [more]
BLAST of CmoCh06G006020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G006020.1CmoCh06G006020.1mRNA