CmoCh06G005980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	short-chain dehydrogenase TIC 32, chloroplastic-like
Location	Cmo_Chr06: 2952288 .. 2953062 (+)
RNA-Seq Expression	CmoCh06G005980
Synteny	CmoCh06G005980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCGATCTAAGTTCTATGAATTTCGTCCCGAACTTCGTTTCCAATTTCGAGTTCTTACATTTGCCTCTTAATCTCCTGATGTAATTCGTCCAGAAACATCGCTAATTCACTCCGTTGAATCGAAGGAACAAACTACAGTGATTTATTAAAGAAACTAAAAGACGGATTCGTTCTGATTTTTCAGTAACAGTGCCGGCAGATTCTGTTACGAACGCGCAATTTCTGAAGACGGAATGGAGATGACGTTCGCTACGAATTATCGAGGTAAGTACGCAGAACAAAAATTTTCGTGTCTAATCATGAGAACTTCTGCCATTATTAATCTGATCGATCATGTAGGTCATTTTCTTTTCACGAAGCTTTTGTTGAATAAGATGATCGAAACAGCCAAATCAACGGGAATCCAAGGCCGAATAGTGAATGTGACGTCCAATATCCACAGCCGGCTTTCCGGCGACGTAATCGAATGTCTCGGCCAGATAAGCCAAAGCAACAGGTAAGATTAATTTTCCTTTGCTTGCGTATCAATGGCGGTCTGATAGCGATACTGATATTAACTCGCAGCAGAGAGTACGACGCGACACGTGCTTACACCGTCCAACTCGCTCACAGACTTCAGGTTCTTCCTCAATATCAATTGGTATGTTCATAGAACGATTTCACGCTCGACTTTGTTTTTGACGAAATCGGAACAGGAAATGGAGGCAAATGTTACAGTAAACTGTGTTCATCCGCGCGTAGTGAAAACCAAATTAAACAGAGATCGTGA

mRNA sequence

ATGGTTCTCGATCTAAGTTCTATGAATTTCGTCCCGAACTTCGTTTCCAATTTCGAGTTCTTACATTTGCCTCTTAATCTCCTGATTAACAGTGCCGGCAGATTCTGTTACGAACGCGCAATTTCTGAAGACGGAATGGAGATGACGTTCGCTACGAATTATCGAGATGATCGAAACAGCCAAATCAACGGGAATCCAAGGCCGAATAGTGAATGTGACGTCCAATATCCACAGCCGGCTTTCCGGCGACGTAATCGAATGTCTCGGCCAGATAAGCCAAAGCAACAGGTAAGATTAATTTTCCTTTGCTTGCGTATCAATGGCGGTCTGATAGCGATACTGATATTAACTCGCAGCAGAGAGTACGACGCGACACGTGCTTACACCGTCCAACTCGCTCACAGACTTCAGGTTCTTCCTCAATATCAATTGAACGATTTCACGCTCGACTTTGTTTTTGACGAAATCGGAACAGGAAATGGAGGCAAATGTTACAGTAAACTGTGTTCATCCGCGCGTAGTGAAAACCAAATTAAACAGAGATCGTGA

Coding sequence (CDS)

ATGGTTCTCGATCTAAGTTCTATGAATTTCGTCCCGAACTTCGTTTCCAATTTCGAGTTCTTACATTTGCCTCTTAATCTCCTGATTAACAGTGCCGGCAGATTCTGTTACGAACGCGCAATTTCTGAAGACGGAATGGAGATGACGTTCGCTACGAATTATCGAGATGATCGAAACAGCCAAATCAACGGGAATCCAAGGCCGAATAGTGAATGTGACGTCCAATATCCACAGCCGGCTTTCCGGCGACGTAATCGAATGTCTCGGCCAGATAAGCCAAAGCAACAGGTAAGATTAATTTTCCTTTGCTTGCGTATCAATGGCGGTCTGATAGCGATACTGATATTAACTCGCAGCAGAGAGTACGACGCGACACGTGCTTACACCGTCCAACTCGCTCACAGACTTCAGGTTCTTCCTCAATATCAATTGAACGATTTCACGCTCGACTTTGTTTTTGACGAAATCGGAACAGGAAATGGAGGCAAATGTTACAGTAAACTGTGTTCATCCGCGCGTAGTGAAAACCAAATTAAACAGAGATCGTGA

Protein sequence

MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSREYDATRAYTVQLAHRLQVLPQYQLNDFTLDFVFDEIGTGNGGKCYSKLCSSARSENQIKQRS

Homology

[Close]

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot
Match: A2RVM0 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           M LDLSSM  V  F S ++   LPLNLLIN+AG       +S+D +E+ FATN+
Sbjct: 85  MELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNH 138

[Close]

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot
Match: A0A078IS66 (Short-chain dehydrogenase TIC 32 A, chloroplastic OS=Brassica napus OX=3708 GN=TIC32A PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 3   LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           LDLSS+  V +F+  F  L++PLN+LIN+AG       +SEDG+E  FATN+
Sbjct: 91  LDLSSIKSVRSFIHQFLALNVPLNILINNAGVMFCPFQLSEDGIESQFATNH 142

[Close]

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot
Match: A0A078ISJ6 (Short-chain dehydrogenase TIC 32 B, chloroplastic OS=Brassica napus OX=3708 GN=TIC32B PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 3   LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           LDLSS+  V +F+  F  L++PLN+LIN+AG       +SEDG+E  FATN+
Sbjct: 91  LDLSSIKSVRSFIHQFLALNVPLNILINNAGVMFCPFQLSEDGIESQFATNH 142

[Close]

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot
Match: Q6RVV4 (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 3   LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           LDLSS++ V  F S F     PLN+LIN+AG       +S+D +E+ FATN+
Sbjct: 88  LDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNH 139

[Close]

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot
Match: A6QP05 (Dehydrogenase/reductase SDR family member 12 OS=Bos taurus OX=9913 GN=DHRS12 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-04
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 2   VLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATN 54
           ++DLS    V  FV NF+  H  LN+LIN+AG    +R ++EDG+E  FATN
Sbjct: 97  IVDLSLPKSVWKFVENFKQEH-TLNVLINNAGCMVNKRELTEDGLEKNFATN 147

[Close]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL
Match: A0A0A0L3R1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G003470 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-29
Identity = 87/151 (57.62%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS 60
           MVLDLSS+N V NFVS FE L+LPLNLL++         ++ E  +E       +DDRN 
Sbjct: 94  MVLDLSSLNSVMNFVSEFESLNLPLNLLMSF--------SLDETSVE-------QDDRNG 153

Query: 61  QINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQ---QVRLIFLCLRINGG-LIAILIL 120
           +I+GNPRPNSECDVQ+PQ  FRRR R+S+PDKP+Q   QVRLI L L ING  +I ILI+
Sbjct: 154 RIDGNPRPNSECDVQHPQLVFRRRIRISQPDKPEQQQVQVRLILLSLCINGAPIIVILII 213

Query: 121 TRSREYDATRAY----------TVQLAHRLQ 138
            +SREYDATRAY          TVQLAHRLQ
Sbjct: 214 IQSREYDATRAYAFSKLANLLHTVQLAHRLQ 229

[Close]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL
Match: A0A5D3CJT3 (Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00890 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.0e-27
Identity = 85/152 (55.92%), Postives = 102/152 (67.11%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS 60
           MVLDLSS+N V NFVS FE L+LPLNLL++         ++ E  +E       +DDRN 
Sbjct: 94  MVLDLSSLNSVMNFVSEFEALNLPLNLLMSF--------SLDETSVE-------QDDRNG 153

Query: 61  QINGNPRPNSECDVQYPQPAFRRRNRMSRPDKP----KQQVRLIFLCLRINGGL-IAILI 120
           +I+ NPRPNSECDVQ+PQ  FRR  R+S+P+KP    +QQVRLI L L ING L I ILI
Sbjct: 154 EIDRNPRPNSECDVQHPQLVFRRHIRISQPNKPELQQQQQVRLIRLSLCINGALIIVILI 213

Query: 121 LTRSREYDATRAY----------TVQLAHRLQ 138
           + +SREYDATRAY          TVQLAHRLQ
Sbjct: 214 IIQSREYDATRAYSFSKLANLLHTVQLAHRLQ 230

[Close]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL
Match: A0A6J1GM95 (short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455220 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 80/143 (55.94%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS 60
           MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYR     
Sbjct: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRG---- 60

Query: 61  QINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLC----LRINGGLIAIL-- 120
                          +          +        Q R++ +      R++G +I  L  
Sbjct: 61  --------------HFLFTKLLLNKMIETAKSTGIQGRIVNVTSNIHSRLSGDVIECLGQ 120

Query: 121 ILTRSREYDATRAYTVQLAHRLQ 138
           I   +REYDATRAYTVQLAHRLQ
Sbjct: 121 ISQSNREYDATRAYTVQLAHRLQ 125

[Close]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL
Match: A0A6J1CV51 (short-chain dehydrogenase TIC 32, chloroplastic isoform X4 OS=Momordica charantia OX=3673 GN=LOC111014858 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-17
Identity = 68/147 (46.26%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS 60
           M LDLSS+N V NFVS FE L+LPLNLLIN+AGRFCYE AISEDG+EMTF TNY   +  
Sbjct: 96  MELDLSSLNSVRNFVSKFESLNLPLNLLINNAGRFCYEHAISEDGIEMTFTTNYLGIQGR 155

Query: 61  QINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIFLCLRINGGLIAILILTRSR 120
            +N      S     +    F    R+SR                           + SR
Sbjct: 156 IVN----LTSNIHSWFSGDIFEYLGRISR---------------------------SNSR 211

Query: 121 EYDATRAY----------TVQLAHRLQ 138
           EYDATRAY          TVQLAHRLQ
Sbjct: 216 EYDATRAYALSKLANVLHTVQLAHRLQ 211

[Close]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL
Match: A0A4Y1RGU2 (NAD(P)-binding Rossmann-fold superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_014397 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.9e-17
Identity = 70/166 (42.17%), Postives = 85/166 (51.20%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY------ 60
           M LDLSS+  V NFVS FE L LPLNLLIN+AG+F +E AISEDG+EMTFATNY      
Sbjct: 147 MALDLSSLTSVRNFVSEFESLQLPLNLLINNAGKFAHEHAISEDGIEMTFATNYLEYLFK 206

Query: 61  -------------RDDRNSQINGNPRPNSECDVQYPQPAFRRRNRMSRPDKPKQQVRLIF 120
                        ++DRN       RPN E  V Y +  F R + +SR DKPK++V    
Sbjct: 207 KIRSFSVDEAAAQQNDRNGGGYRRSRPNRERLVGYSRLVFGRYHPISRRDKPKRKV---- 266

Query: 121 LCLRINGGLIAILILTRSREYDATRAY----------TVQLAHRLQ 138
                            S +YD TRAY          T +LA RL+
Sbjct: 267 -----------------SDDYDETRAYALSKLGNVLHTKELARRLK 291

[Close]

BLAST of CmoCh06G005980 vs. TAIR 10
Match: AT4G24050.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-14
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           M LDLSS+  V NFV++FE L LPLNLLIN+AG+  +E AISEDG+EMTFATNY
Sbjct: 90  MKLDLSSIASVRNFVADFESLDLPLNLLINNAGKLAHEHAISEDGIEMTFATNY 143

[Close]

BLAST of CmoCh06G005980 vs. TAIR 10
Match: AT1G64590.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-13
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           M LDLSS+  V  FV +FE L+LPLN+LIN+AG++ ++ A+SEDG+EMTFATNY
Sbjct: 90  MHLDLSSLTSVRRFVDDFESLNLPLNILINNAGKYAHKHALSEDGVEMTFATNY 143

[Close]

BLAST of CmoCh06G005980 vs. TAIR 10
Match: AT5G02540.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 3   LDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           LDLSS+  +  FV  F  LHLPLNLLIN+AG       +SEDG+E+ FATN+
Sbjct: 91  LDLSSIKSIKAFVREFHALHLPLNLLINNAGVMFCPYQLSEDGIELQFATNH 142

[Close]

BLAST of CmoCh06G005980 vs. TAIR 10
Match: AT4G11410.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNY 55
           M LDLSSM  V +F S ++ L LPLNLLIN+AG       +S D +E+ FATN+
Sbjct: 85  MKLDLSSMASVRSFASEYQSLDLPLNLLINNAGIMACPFLLSSDNIELQFATNH 138

[Close]

BLAST of CmoCh06G005980 vs. TAIR 10
Match: AT4G23430.3 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 52.8 bits (125), Expect = 3.5e-07
Identity = 29/60 (48.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 1   MVLDLSSMNFVPNFVSNFEFLHLPLNLLINSAGRFCYERAISEDGMEMTFATNYRDDRNS 60
           M LDLSSM  V  F S ++   LPLNLLIN+AG       +S+D +E+ FATN+ D   S
Sbjct: 85  MELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLDTMKS 144

The following BLAST results are available for this feature:

BLAST of CmoCh06G005980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVM0	1.1e-05	50.00	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
A0A078IS66	1.4e-05	50.00	Short-chain dehydrogenase TIC 32 A, chloroplastic OS=Brassica napus OX=3708 GN=T...	[more]
A0A078ISJ6	1.4e-05	50.00	Short-chain dehydrogenase TIC 32 B, chloroplastic OS=Brassica napus OX=3708 GN=T...	[more]
Q6RVV4	2.0e-04	46.15	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]
A6QP05	7.8e-04	48.08	Dehydrogenase/reductase SDR family member 12 OS=Bos taurus OX=9913 GN=DHRS12 PE=...	[more]

BLAST of CmoCh06G005980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3R1	2.5e-29	57.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G003470 PE=4 SV=1	[more]
A0A5D3CJT3	4.0e-27	55.92	Short-chain dehydrogenase TIC 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1GM95	2.0e-26	55.94	short-chain dehydrogenase TIC 32, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1CV51	2.2e-17	46.26	short-chain dehydrogenase TIC 32, chloroplastic isoform X4 OS=Momordica charanti...	[more]
A0A4Y1RGU2	4.9e-17	42.17	NAD(P)-binding Rossmann-fold superfamily protein OS=Prunus dulcis OX=3755 GN=Pru...	[more]

BLAST of CmoCh06G005980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24050.1	2.9e-14	70.37	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G64590.1	2.5e-13	62.96	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT5G02540.1	1.1e-08	55.77	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G11410.1	2.0e-07	51.85	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.3	3.5e-07	48.33	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24320:SF210	MITOCHONDRIAL PYRUVATE CARRIER	coord: 1..54
None	No IPR available	PANTHER	PTHR24320	RETINOL DEHYDROGENASE	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005980.1	CmoCh06G005980.1	mRNA