CmoCh06G005820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G005820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioncold shock domain-containing protein 3-like
LocationCmo_Chr06: 2857978 .. 2858763 (-)
RNA-Seq ExpressionCmoCh06G005820
SyntenyCmoCh06G005820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATAAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCGAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGGGGCGGCCGGGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTGCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCAAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGCGGCGGGGCCGGTGGTGGGGGTTGTTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGCCGTAACAGCGGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCATGA

mRNA sequence

ATGGGGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATAAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCGAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGGGGCGGCCGGGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTGCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCAAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGCGGCGGGGCCGGTGGTGGGGGTTGTTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGCCGTAACAGCGGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCATGA

Coding sequence (CDS)

ATGGGGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTCCATAAAATCAGATGGCTACCGTAGCCTTGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCGAAAGCTATTGAGGTCGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGACGGGGCGGCCGGGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGCAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTGCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGGTTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCAAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGCGGCGGGGCCGGTGGTGGGGGTTGTTATAATTGTGGTGGTTTTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGCCGTAACAGCGGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCACCATGA

Protein sequence

MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Homology
[Close]
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.8e-54
Identity = 148/295 (50.17%), Postives = 177/295 (60.00%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRG--------------GRGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G G                  G GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN--- 184
               G G CY CG+ GH ARDC ++   N GGGGG G  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNE 244
              GGGG G+GG GCY CGG GH ARDC + G GG  GGGG  C+ CG  GH+A+ C ++
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTSK 249

Query: 245 SRNSGGGG-----RFGG----------------GGGGGANTCFNCGKSGHFAREC 258
             + GGGG       GG                GGGGG+N CF CGK GHFAREC
Sbjct: 250 IPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-49
Identity = 144/289 (49.83%), Postives = 164/289 (56.75%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG-------------YGFGGWRGGDRRNGS 124
           KA+ V A  G S  + +N  G G R G GG G              G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR-- 129

Query: 125 SGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDC  A N   RG   G   GC+TCG+VGH+ARDC + + G 
Sbjct: 130 -SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GG--GGAGGG--GCYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQ 244
           G   G   GG  GCY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC 
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA 249

Query: 245 NESRNS------GGGGRF-------GGGGGGGANTCFNCGKSGHFAREC 258
            + + S      GG G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-41
Identity = 129/258 (50.00%), Postives = 148/258 (57.36%), Query Frame = 0 

Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGK 63
           +R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ SG DG+
Sbjct: 7   QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 64  SKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGGGYGFG-GWRGGDRRNGSSGAGGGGCY 123
           +KA++V   DG++  G R    GGGGG GGRGGGGYG G G  GG  R GS G GGG   
Sbjct: 67  TKAVDVTGPDGAAVQGGR----GGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGD-- 126

Query: 124 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 183
                             GGGGG GGG                   GGGGGG GGG    
Sbjct: 127 ---------------GGYGGGGGYGGG----------------SRYGGGGGGYGGG---- 186

Query: 184 CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRF-GGGGGG 243
                        GG GGG  GGG GCF CGE GH ARDC ++S   GGGGRF GGGGGG
Sbjct: 187 -------------GGYGGGGSGGGSGCFKCGESGHFARDC-SQSGGGGGGGRFGGGGGGG 209

Query: 244 GANTCFNCGKSGHFAREC 258
           G   C+ CG+ GHFAREC
Sbjct: 247 GGGGCYKCGEDGHFAREC 209

[Close]
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.7e-37
Identity = 113/228 (49.56%), Postives = 133/228 (58.33%), Query Frame = 0 

Query: 2   GEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDD 61
           G ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++
Sbjct: 7   GGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNN 66

Query: 62  GKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGC 121
            + KAI+V   DG+   GN      GGG  GGRG    GFGG RGG R +G    GGGG 
Sbjct: 67  NRPKAIDVSGPDGAPVQGN-----SGGGSSGGRG----GFGGGRGGGRGSGGGYGGGGGG 126

Query: 122 YQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGG 181
           Y                 RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG
Sbjct: 127 Y---------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 186

Query: 182 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 226
            Y  GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 187 GYGGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.7e-33
Identity = 110/231 (47.62%), Postives = 129/231 (55.84%), Query Frame = 0 

Query: 2   GEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDD 61
           G +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + 
Sbjct: 11  GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNS 70

Query: 62  GKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 121
           G+ KAIEV   DG+    + N GGGG  GGR  GG+G GG RGG R  GS G G GG   
Sbjct: 71  GRPKAIEVSGPDGAP--VQGNSGGGGSSGGR--GGFGGGGGRGGGRGGGSYGGGYGG--- 130

Query: 122 CGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNC 181
                       R S   GGGG    CF CGE GH+AR+C +G  GGG  G GGGG Y  
Sbjct: 131 ------------RGSGGRGGGGGDNSCFKCGEPGHMARECSQG--GGGYSGGGGGGRYGS 190

Query: 182 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGR 233
           GG             GGG GGGG  C++CGE GH ARDC      + GG R
Sbjct: 191 GG-------------GGGGGGGGLSCYSCGESGHFARDC------TSGGAR 201

[Close]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 5.9e-141
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0 

Query: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180
           QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN
Sbjct: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGGGG 240
           CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGGGG
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGGGG 240

Query: 241 ANTCFNCGKSGHFARECPDAP 262
           ANTCFNCGKSGHFARECPDAP
Sbjct: 241 ANTCFNCGKSGHFARECPDAP 261

[Close]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match: A0A6J1KVQ4 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111498622 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 255/263 (96.96%), Postives = 255/263 (96.96%), Query Frame = 0 

Query: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCY 120

Query: 121 QCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGN-SGGGGGGAGGGGCY 180
           QCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDC RGN  GGGGGGAGGGGCY
Sbjct: 121 QCGEQGHLARDCARGSNRGGGGGSGGGCFTCGEVGHLARDCQRGNGGGGGGGGAGGGGCY 180

Query: 181 NCGGFGHLARDCNRGGA-GGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGG 240
           NCGGFGHLARDCNRGGA GGG GGGGGGCFNCGEYGHLARDCQNESRNS GGGRFGGGGG
Sbjct: 181 NCGGFGHLARDCNRGGAGGGGGGGGGGGCFNCGEYGHLARDCQNESRNSSGGGRFGGGGG 240

Query: 241 GGANTCFNCGKSGHFARECPDAP 262
           GGANTCFNCGKSGHFARECPDAP
Sbjct: 241 GGANTCFNCGKSGHFARECPDAP 263

[Close]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match: A0A6J1E5N5 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430958 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 4.9e-127
Identity = 249/262 (95.04%), Postives = 249/262 (95.04%), Query Frame = 0 

Query: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR--GGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGG 180
           CYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGGAGGG 
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGA 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR S GGGRF   G
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRF---G 240

Query: 241 GGGANTCFNCGKSGHFARECPD 260
           GGGANTCFNCGKSGHFARECPD
Sbjct: 241 GGGANTCFNCGKSGHFARECPD 257

[Close]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match: A0A0A0L4X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 1.1e-126
Identity = 249/272 (91.54%), Postives = 252/272 (92.65%), Query Frame = 0 

Query: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGG----GGRGGRGGGGYGFGGWRGGDRRNGSSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGG    GGRGG GGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180
           GGCYQCGEQGHLARDC R SNRGGGGG GGGCFTCGEVGHLARDCPRGNSGGGGGG GGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 G--CYNCGGFGHLARDCNRGGAGGGS--GGGGGGCFNCGEYGHLARDCQNESRNS--GGG 240
           G  CYNCGGFGHLARDCNRGGAGGGS  GGGGGGCFNCGEYGH+ARDCQNESR S  GGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGGCFNCGEYGHIARDCQNESRGSGGGGG 240

Query: 241 GRF--GGGGGGGANTCFNCGKSGHFARECPDA 261
           GRF  GGGGGGG+NTCFNCGKSGHFARECPDA
Sbjct: 241 GRFGGGGGGGGGSNTCFNCGKSGHFARECPDA 272

[Close]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match: A0A6J1HNK3 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465226 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.1e-126
Identity = 245/261 (93.87%), Postives = 245/261 (93.87%), Query Frame = 0 

Query: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR--GGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGC 180
           CYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS   GGGAGGG C
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS---GGGAGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGGG 240
           YNCGGFGHLARDCNRGGAGGGSGGGGG CFNCGEYGHLARDCQNESR SGGGG  G  GG
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGSCFNCGEYGHLARDCQNESRGSGGGG--GRFGG 240

Query: 241 GGANTCFNCGKSGHFARECPD 260
           GGANTCFNCGKSGHFARECPD
Sbjct: 241 GGANTCFNCGKSGHFARECPD 256

[Close]
BLAST of CmoCh06G005820 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 148/295 (50.17%), Postives = 177/295 (60.00%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRG--------------GRGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G G                  G GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN--- 184
               G G CY CG+ GH ARDC ++   N GGGGG G  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNE 244
              GGGG G+GG GCY CGG GH ARDC + G GG  GGGG  C+ CG  GH+A+ C ++
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGGSTCYTCGGVGHIAKVCTSK 249

Query: 245 SRNSGGGG-----RFGG----------------GGGGGANTCFNCGKSGHFAREC 258
             + GGGG       GG                GGGGG+N CF CGK GHFAREC
Sbjct: 250 IPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]
BLAST of CmoCh06G005820 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 198.0 bits (502), Expect = 9.6e-51
Identity = 144/289 (49.83%), Postives = 164/289 (56.75%), Query Frame = 0 

Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG-------------YGFGGWRGGDRRNGS 124
           KA+ V A  G S  + +N  G G R G GG G              G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERR-- 129

Query: 125 SGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDC  A N   RG   G   GC+TCG+VGH+ARDC + + G 
Sbjct: 130 -SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GG--GGAGGG--GCYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQ 244
           G   G   GG  GCY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC 
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA 249

Query: 245 NESRNS------GGGGRF-------GGGGGGGANTCFNCGKSGHFAREC 258
            + + S      GG G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]
BLAST of CmoCh06G005820 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 155.6 bits (392), Expect = 5.4e-38
Identity = 113/228 (49.56%), Postives = 133/228 (58.33%), Query Frame = 0 

Query: 2   GEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDD 61
           G ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++
Sbjct: 7   GGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNN 66

Query: 62  GKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGC 121
            + KAI+V   DG+   GN      GGG  GGRG    GFGG RGG R +G    GGGG 
Sbjct: 67  NRPKAIDVSGPDGAPVQGN-----SGGGSSGGRG----GFGGGRGGGRGSGGGYGGGGGG 126

Query: 122 YQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGG 181
           Y                 RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG
Sbjct: 127 Y---------------GGRGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 186

Query: 182 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 226
            Y  GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 187 GYGGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]
BLAST of CmoCh06G005820 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-34
Identity = 110/231 (47.62%), Postives = 129/231 (55.84%), Query Frame = 0 

Query: 2   GEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDD 61
           G +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + 
Sbjct: 11  GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNS 70

Query: 62  GKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 121
           G+ KAIEV   DG+    + N GGGG  GGR  GG+G GG RGG R  GS G G GG   
Sbjct: 71  GRPKAIEVSGPDGAP--VQGNSGGGGSSGGR--GGFGGGGGRGGGRGGGSYGGGYGG--- 130

Query: 122 CGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNC 181
                       R S   GGGG    CF CGE GH+AR+C +G  GGG  G GGGG Y  
Sbjct: 131 ------------RGSGGRGGGGGDNSCFKCGEPGHMARECSQG--GGGYSGGGGGGRYGS 190

Query: 182 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGR 233
           GG             GGG GGGG  C++CGE GH ARDC      + GG R
Sbjct: 191 GG-------------GGGGGGGGLSCYSCGESGHFARDC------TSGGAR 201

The following BLAST results are available for this feature:
BLAST of CmoCh06G005820 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94C691.8e-5450.17Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
O656391.3e-4949.83Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
P274843.9e-4150.00Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
Q411887.7e-3749.56Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
Q388966.7e-3347.62Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
BLAST of CmoCh06G005820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GAE95.9e-141100.00cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=... [more]
A0A6J1KVQ41.8e-13496.96cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1E5N54.9e-12795.04cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A0A0L4X71.1e-12691.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1[more]
A0A6J1HNK33.1e-12693.87cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
BLAST of CmoCh06G005820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G17870.11.3e-5550.17cold shock domain protein 3 [more]
AT4G36020.19.6e-5149.83cold shock domain protein 1 [more]
AT4G38680.15.4e-3849.56glycine rich protein 2 [more]
AT2G21060.14.8e-3447.62glycine-rich protein 2B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 85..96
score: 42.71
coord: 168..183
score: 49.22
coord: 196..206
score: 39.77
coord: 229..247
score: 40.13
NoneNo IPR availableGENE3D2.40.50.140coord: 2..70
e-value: 8.2E-25
score: 88.5
NoneNo IPR availableGENE3D4.10.60.10coord: 239..261
e-value: 3.1E-8
score: 35.1
coord: 200..229
e-value: 2.2E-7
score: 32.4
coord: 105..142
e-value: 1.1E-5
score: 26.9
NoneNo IPR availableGENE3D4.10.60.10coord: 143..199
e-value: 3.8E-14
score: 54.3
NoneNo IPR availablePANTHERPTHR46565:SF12COLD SHOCK PROTEIN 2coord: 1..109
NoneNo IPR availablePANTHERPTHR46565COLD SHOCK DOMAIN PROTEIN 2coord: 109..141
coord: 135..260
coord: 1..109
NoneNo IPR availablePANTHERPTHR46565:SF12COLD SHOCK PROTEIN 2coord: 109..141
coord: 135..260
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 44..62
score: 40.51
coord: 8..23
score: 61.03
coord: 29..38
score: 59.44
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 7..71
e-value: 3.2E-23
score: 81.3
IPR002059Cold-shock protein, DNA-bindingPROSITEPS51857CSD_2coord: 5..71
score: 30.372931
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 7..69
e-value: 3.58207E-24
score: 90.3306
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 118..134
e-value: 0.0016
score: 27.7
coord: 177..193
e-value: 5.2E-4
score: 29.3
coord: 147..163
e-value: 2.6E-5
score: 33.7
coord: 243..259
e-value: 5.9E-6
score: 35.8
coord: 206..222
e-value: 3.2E-5
score: 33.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 242..258
e-value: 5.0E-8
score: 32.7
coord: 147..162
e-value: 1.1E-7
score: 31.6
coord: 177..191
e-value: 7.5E-6
score: 25.8
coord: 118..132
e-value: 1.1E-5
score: 25.3
coord: 206..221
e-value: 5.0E-7
score: 29.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 178..191
score: 10.476859
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 244..259
score: 11.432861
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 119..132
score: 10.971343
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 148..163
score: 11.086722
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 207..222
score: 10.921894
IPR011129Cold shock domainSMARTSM00357csp_8coord: 7..72
e-value: 9.4E-25
score: 98.2
IPR019844Cold-shock (CSD) domainPROSITEPS00352CSD_1coord: 19..38
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..74
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 170..224
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 110..165
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 226..259

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G005820.1CmoCh06G005820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding