CmoCh06G005780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L21
Location	Cmo_Chr06: 2839572 .. 2840853 (+)
RNA-Seq Expression	CmoCh06G005780
Synteny	CmoCh06G005780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTTCGTTCGATTTCCGATTCCTTTCATTTTTCGATTAATTCTGTTTTCGTTTTTTTTATTATATCTGTTTTTGTTTTGGAAATGTTTAAAATTTTAGTGTTTTAGGTCTCGGATTGTGTTTGATTTGTGTAGTAACTTGTTTAGGTTTAGGCTGGATAAGTTGTGGACTCTGTTCTGTTTATATTTCGCTGGTTCTTATTGATTTGATCTTTTAGGATGTGGAATATGTATCCGTTAATTTTTATAGCAAATCACTTGGTGAATGTTTTTATAGTTGCGCGGTTTCAGATTGTCGAATGCTAACTATGTTTGTTTGGCGTTGCTTGAAATTCACATTATATTTTAGTTGTCACATATGTTTGAAGCAAGTTTTGTATGAATCTCTGCCAAGTGTTGTTTTCATGAATCGATTTGGATGTAGGACAGCTAAATCATGCTGTAACTCAAATTTCTTGAGTTTGATTCGAGAAATAAACATTCACTTTTGTGCTGATTCTACTGAATGAAATTTGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

mRNA sequence

TGTGAGGGAAGAGTTTTATCCTGCTGAGAGGGAACGATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAGAATTATCTTCATTGAACTTGCTTTGTTTGGCTGTTTTTTGTTTTGGTCTATGAACTTATTGGATAGTGTTACAATTTTCTCGTTATGCACCTAAATTTTGGATACGAATCTTATCTGTTAAATTGTTCCTTATTTTTCTGGATTCTGCCATAGCCTTTGATACATGAGTGTAGTTTCAGCTGATTAATCCATCTGTTTTGATGCATTTGGTTCTCTCTAATTCCTTAAATCTTTTG

Coding sequence (CDS)

ATGCCGGCTGGCCATGGACTTCGCTCTCGTACCAGAGACCTCTTCGCCAGGCCCTTCAGGAAGAAGGGTTACATTGCCCTCACTACATACCTGAGGACCTACAAGATTGGCGACTATGTCGACATCAAGGTTAATGGTGCCATCCACAAAGGTATGCCTCACAAGTTCTATCATGGCCGCACTGGTCGTGTGTGGAACGTTACCAAGCGCGCCATCGGTGTGGAGATTAACAAGCAGGTGGGGAACAGGATAATTAAGAAGCGGATTCATGTACGTGTTGAGCATGTCCAACCCTCTAGATGCGCAGAAGAATTCGTACTTCGAAAGGTTAAGAATGATCAACTGAAGGCCGACGCCAAGGCTAAAGGTGAAGTCATTTGCACAAAGAGGCAGCCAGAAGGCCCCAAACCAGGGTTTATGGTTGAAGGTGCATTGATGGAGACTGTTACTCCAATTCCCTACGATGTCGTCAATGATCTCAAGGGAGGTTATTAG

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAKAKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-81
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 90/158 (56.96%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F+ R  +ND++K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
            AK  V  TKR P  PK G ++  +G + ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42
Identity = 83/157 (52.87%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF+ R   N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot
Match: Q12672 (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.5e-42
Identity = 82/157 (52.23%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + ++TYL+ YK+GD VDIK NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF+ R   N   +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMV--EGALMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG + +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL
Match: A0A6J1KU90 (60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.6e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL
Match: A0A6J1G726 (60S ribosomal protein L21-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451367 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 6.6e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL
Match: A0A6J1J6F8 (60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.1e-88
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFCLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL
Match: A0A6J1IYF0 (60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL
Match: A0A6J1F2B9 (60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 158/164 (96.34%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRT+KIGDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTFKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCAEEF LRKVKNDQLKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCAEEFRLRKVKNDQLKAEAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.9 bits (777), Expect = 7.8e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.9 bits (777), Expect = 7.8e-83
Identity = 140/164 (85.37%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK +ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A+GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of CmoCh06G005780 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-82
Identity = 140/164 (85.37%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEEFVLRKVKNDQLKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRCAEEF LRK KND+LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 165
           A GE I TKRQP+GPKPGFMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of CmoCh06G005780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDZ9	1.1e-81	85.37	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q43291	1.9e-81	85.37	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
O82574	1.0e-42	56.96	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q02753	3.8e-42	52.87	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
Q12672	8.5e-42	52.23	60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of CmoCh06G005780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KU90	6.6e-90	100.00	60S ribosomal protein L21-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498718 PE=...	[more]
A0A6J1G726	6.6e-90	100.00	60S ribosomal protein L21-2-like OS=Cucurbita moschata OX=3662 GN=LOC111451367 P...	[more]
A0A6J1J6F8	8.1e-88	96.34	60S ribosomal protein L21-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481771 PE=...	[more]
A0A6J1IYF0	1.4e-87	96.34	60S ribosomal protein L21-1 OS=Cucurbita maxima OX=3661 GN=LOC111481773 PE=3 SV=...	[more]
A0A6J1F2B9	1.4e-87	96.34	60S ribosomal protein L21-1 OS=Cucurbita moschata OX=3662 GN=LOC111441506 PE=3 S...	[more]

BLAST of CmoCh06G005780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57660.1	7.8e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G57860.1	7.8e-83	85.37	Translation protein SH3-like family protein	[more]
AT1G09590.1	1.3e-82	85.37	Translation protein SH3-like family protein	[more]
AT1G09690.1	1.3e-82	85.37	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 1.8E-23 score: 84.3
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 3.4E-46 score: 157.3
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 5.9E-46 score: 154.5
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005780.1	CmoCh06G005780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome