CmoCh06G005570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VQ domain-containing protein
Location	Cmo_Chr06: 2702781 .. 2703113 (+)
RNA-Seq Expression	CmoCh06G005570
Synteny	CmoCh06G005570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTCCAACGTCTTACTGGAAAAGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGATGAGGAATGTGTATCGGCCTGCACTTACATTCCGTCGTAG

mRNA sequence

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTCCAACGTCTTACTGGAAAAGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGATGAGGAATGTGTATCGGCCTGCACTTACATTCCGTCGTAG

Coding sequence (CDS)

ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGACGAATCTGCGTCCGATTCCGAATCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTCCAACGTCTTACTGGAAAAGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGATGAGGAATGTGTATCGGCCTGCACTTACATTCCGTCGTAG

Protein sequence

MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEECVSACTYIPS

Homology

[Close]

BLAST of CmoCh06G005570 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 11 LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGKGSSV 81
            EF + VQRLTG  S V
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmoCh06G005570 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 16  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmoCh06G005570 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.6e-06
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmoCh06G005570 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 32/90 (35.56%), Postives = 42/90 (46.67%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 75  VRPEEFKSFVQRLTGKGSSVAVVAASFSAT 91
             P  F + VQRLTG+ S+    ++S S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL
Match: A0A5D3DP92 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004940 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 81/109 (74.31%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 6   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 65

Query: 63  RPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEECVSACTYIPS 111
           RPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE  SAC  IPS
Sbjct: 66  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 109

[Close]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL
Match: A0A1S3B975 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.0e-30
Identity = 81/109 (74.31%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 3   SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHV 62
           +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHV
Sbjct: 4   TAARNQ--SQLRGPRPPPLTVNKSSTNIFKKSTKNPNQR---NRRSPIIIYLRSPKIIHV 63

Query: 63  RPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEECVSACTYIPS 111
           RPEEFKSFVQRLTG  SSVAVVA+S SA+GMI DH  EE  SAC  IPS
Sbjct: 64  RPEEFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL
Match: A0A0A0LEW5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.4e-27
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 2   NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPK 61
           ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK
Sbjct: 5   SAAARNH--SQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPK 64

Query: 62  IIHVRPEEFKSFVQRLTGKGSSVAVVAASFSATGMIADHPDEECVSACTYIPS 111
           +IHVRPEEFKSFVQRLTG  SSVAVVA+S SATGMI    DEE VS C  IPS
Sbjct: 65  VIHVRPEEFKSFVQRLTGNRSSVAVVASSCSATGMI---NDEEFVSVCNCIPS 112

[Close]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL
Match: A0A1R3JJT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.9e-14
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTKIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFK 72
          L+GPRP PL V+ +S+KI KK STT++L+   N R    DPV++YLRSPKIIHVRPEEF 
Sbjct: 10 LQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKIIHVRPEEFM 69

Query: 73 SFVQRLTGKGSSVAVVAA 86
          S VQRLTGK S+ A  ++
Sbjct: 70 SLVQRLTGKDSTTATTSS 87

[Close]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL
Match: A0A1R3HED5 (VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.9e-14
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFK 72
          L+GPRP PL V+ +S+KI KKS+TT+ +   N R     DPV++YLRSPKIIHVRPEEF 
Sbjct: 10 LQGPRPTPLKVSNTSSKIIKKSSTTSHQAPKNIRSKNIIDPVVIYLRSPKIIHVRPEEFM 69

Query: 73 SFVQRLTGKGSSVA 82
          S VQRLTGK S+ A
Sbjct: 70 SLVQRLTGKDSTTA 83

[Close]

BLAST of CmoCh06G005570 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 11 LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVR 70
          L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H  
Sbjct: 22 LQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHAT 81

Query: 71 PEEFKSFVQRLTGKGSSV 81
            EF + VQRLTG  S V
Sbjct: 82 ASEFMNVVQRLTGISSGV 97

[Close]

BLAST of CmoCh06G005570 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 35/90 (38.89%), Postives = 45/90 (50.00%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GPRP PL V   S KI KK       P P                  PVI+Y  SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 75  VRPEEFKSFVQRLTGKGSSVAVVAASFSAT 91
             P  F + VQRLTGK +S +  ++S+S++
Sbjct: 73  THPNNFMTLVQRLTGK-TSTSTTSSSYSSS 101

[Close]

BLAST of CmoCh06G005570 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 26/60 (43.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 16  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG 75
           P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of CmoCh06G005570 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.2 bits (121), Expect = 6.1e-07
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 13 LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQ 72
          + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQ
Sbjct: 9  INGSRPSSLKLAGESHTI-KKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 68

Query: 73 RLTG 76
          RLTG
Sbjct: 69 RLTG 71

[Close]

BLAST of CmoCh06G005570 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-06
Identity = 32/90 (35.56%), Postives = 42/90 (46.67%), Query Frame = 0


Query: 15  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIH 74
           GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 75  VRPEEFKSFVQRLTGKGSSVAVVAASFSAT 91
             P  F + VQRLTG+ S+    ++S S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

The following BLAST results are available for this feature:

BLAST of CmoCh06G005570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	2.4e-08	44.87	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
Q9LS54	1.7e-06	43.33	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	8.6e-06	45.31	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
F4HWF9	3.3e-05	35.56	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CmoCh06G005570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP92	1.0e-30	74.31	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A1S3B975	1.0e-30	74.31	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1	[more]
A0A0A0LEW5	2.4e-27	69.91	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=...	[more]
A0A1R3JJT0	8.9e-14	60.26	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 P...	[more]
A0A1R3HED5	8.9e-14	62.16	VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29493 PE=4 ...	[more]

BLAST of CmoCh06G005570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	1.7e-09	44.87	MAP kinase substrate 1	[more]
AT1G21326.1	1.2e-07	38.89	VQ motif-containing protein	[more]
AT3G18360.1	1.2e-07	43.33	VQ motif-containing protein	[more]
AT1G68450.1	6.1e-07	45.31	VQ motif-containing protein	[more]
AT1G21320.1	2.3e-06	35.56	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 55..79 e-value: 8.4E-9 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33143:SF51	PROTEIN MKS1-LIKE	coord: 2..93
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 2..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005570.1	CmoCh06G005570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus