CmoCh06G005490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G005490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPollen preferential protein
LocationCmo_Chr06: 2664689 .. 2665165 (-)
RNA-Seq ExpressionCmoCh06G005490
SyntenyCmoCh06G005490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA

mRNA sequence

ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA

Coding sequence (CDS)

ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA

Protein sequence

MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAIYKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKKSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI
Homology
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A6J1GVU4 (uncharacterized protein LOC111457605 OS=Cucurbita moschata OX=3662 GN=LOC111457605 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60
           MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI
Sbjct: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60

Query: 61  YKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKK 120
           YKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKK
Sbjct: 61  YKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKK 120

Query: 121 SDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI 159
           SDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI
Sbjct: 121 SDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI 158

BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 112/158 (70.89%), Postives = 133/158 (84.18%), Query Frame = 0

Query: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60
           MSN +M RPP S R QPLL SKS  GS+RFAEVAGGTTAECAAVCCCCPC V++FLVLAI
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTRRRHSL-RKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGK 120
           YKVPAGLCRRALRT+RR  L +KG +P+RRGR S   YDE D+QIL+ GK++++SE +G+
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVIPARRGRYSYGGYDETDIQILSAGKSLYSSEPRGQ 120

Query: 121 KSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDS 158
           +++ETERKVMELE EMWE FY TGFWRSPS+R+Q S S
Sbjct: 121 QAEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSIS 158

BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55
Identity = 114/158 (72.15%), Postives = 131/158 (82.91%), Query Frame = 0

Query: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60
           MSN +MFRPP S R QPLL SKS  GS+RFAEVAGGTTAECAAVCCCCPC V++FLVLAI
Sbjct: 1   MSNTIMFRPPSSNRRQPLLTSKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTRRRHSL-RKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGK 120
           YKVPAGLCRRALRT+RR  L +KG  P+RRGR S   YDE D+QIL+ GK +++SE +G+
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKKKGVTPARRGRFSFGGYDETDIQILSAGKLVYSSEPRGQ 120

Query: 121 KSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDS 158
           ++ ETERKVMELE EMWE FY TGFWRSPS+RDQ S S
Sbjct: 121 QAVETERKVMELEKEMWEIFYSTGFWRSPSRRDQTSIS 158

BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50
Identity = 105/157 (66.88%), Postives = 124/157 (78.98%), Query Frame = 0

Query: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60
           MSN +M RPP S R QPLL SKS  GS+RFAEVAGGTTAECAAVCCCCPC V++FLVLAI
Sbjct: 1   MSNTIMLRPPSSNRRQPLLASKSASGSVRFAEVAGGTTAECAAVCCCCPCVVINFLVLAI 60

Query: 61  YKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKK 120
           YKVPAGLCRRALRT+RR  L+K              YDE D+QIL+ GK++++SE +G++
Sbjct: 61  YKVPAGLCRRALRTKRRQRLKK----------KDGGYDETDIQILSAGKSLYSSEPRGQQ 120

Query: 121 SDETERKVMELETEMWETFYGTGFWRSPSQRDQISDS 158
           ++ETERKVMELE EMWE FY TGFWRSPS+R+Q S S
Sbjct: 121 AEETERKVMELEKEMWEIFYSTGFWRSPSRRNQTSIS 147

BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.0e-44
Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = 0

Query: 1   MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAI 60
           MSN VMFRP LS   Q L+ SKS+  ++RFAEVAGGTTAECAAV CCCPC  ++FLVLAI
Sbjct: 1   MSNAVMFRPTLSNPRQTLIPSKSVSSTVRFAEVAGGTTAECAAVFCCCPCIAVNFLVLAI 60

Query: 61  YKVPAGLCRRALRTRRRHSL--RKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKG 120
           YK+PAGLCRRALRT+ R ++  +KG  P+R GR      D+AD+Q++T  K ++      
Sbjct: 61  YKLPAGLCRRALRTKHRQNVKKKKGIHPARLGRFPGGILDDADVQVITMEKTVY------ 120

Query: 121 KKSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDS 158
             S+E ERKV+ELE EMWE FY TGFWRSPSQRDQIS S
Sbjct: 121 --SEEAERKVVELEKEMWEVFYNTGFWRSPSQRDQISSS 151

BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 80/179 (44.69%), Postives = 97/179 (54.19%), Query Frame = 0

Query: 9   PPLSKREQPLL-RSKSIP------GSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAIY 68
           P  S R QPLL RS S P      G    AE  GGTTA CAAV CCCPC +++ LVLAIY
Sbjct: 26  PSRSNRRQPLLQRSLSSPSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLVNLLVLAIY 85

Query: 69  KVPAGLCRRALRTRRRHSL-RKGTLP--------SRRGR-------------CSACSYDE 128
           KVP G+CRRA+R+RRR  L + G LP         R  R                 S DE
Sbjct: 86  KVPKGICRRAIRSRRRKQLVKNGILPPLPTDGKNERMQRVFQNSEFAIHPLDSDDVSDDE 145

Query: 129 AD---LQILTGGKAMHASELKGKKSDETERKVMELETEMWETFYGTGFWRSPSQRDQIS 156
            D   L +   GK++       +++DE +  V+ LE EMW  FYG GFWRSPSQR+ +S
Sbjct: 146 DDDNFLDLKYIGKSVATGFTTEEETDEDDEAVLALEKEMWNRFYGAGFWRSPSQRESVS 204

BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-21
Identity = 68/172 (39.53%), Postives = 89/172 (51.74%), Query Frame = 0

Query: 1   MSNKVMFRPPL--SKREQPLLRSKSIPGSL-----RFAEVAGGTTAECAAVCCCCPCFVL 60
           M+  V+ + PL  S  E  +  S     SL     +  EVAGG  AECAAV CCCPC V+
Sbjct: 1   MTRHVILKSPLLVSSEESTMRNSPPSTTSLSKERRKVGEVAGGAAAECAAVWCCCPCAVV 60

Query: 61  HFLVLAIYKVPAGLCRRALR-------TRRRHSLRKGTLPSRRGRCSACSYDEADLQILT 120
           + +VLA+YKVPA +C++A R       TR+RH L                 +E DL    
Sbjct: 61  NLMVLAVYKVPAAVCKKAWRRSKRRRFTRKRHGLLASATAEGSESTVHARLNEEDLTAEI 120

Query: 121 GGKAMHASELKGKKSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI 159
             +  H S   G+ +D     V+ LE EM + FYG GFWRSPSQ+D  S S+
Sbjct: 121 VFEECHVS--GGELND-----VVRLENEMLDRFYGAGFWRSPSQKDTSSGSL 165

BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-20
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 0

Query: 14  REQPLLRSKSIP----GSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAIYKVPAGLCR 73
           ++  L RS S P    G    AE  GGTTA CAA+C C PC V++ +VLA+YK+P GLCR
Sbjct: 3   KQPSLRRSLSTPSLCGGGSTTAECCGGTTASCAALCLCAPCSVVNLVVLAVYKLPRGLCR 62

Query: 74  RALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGK---AMHASELKGKKSDETE- 133
           RA+R  RR  L K              + E+  +   GG    A+H  E + ++ +E E 
Sbjct: 63  RAIRRIRRKRLAKK------------EFVESGREFGRGGSSQFAVHPLESRDEEEEEEEE 122

Query: 134 -RKVMELETEMWETFYGTGFWRSPSQRDQIS 156
              V+ LE EMW  FY  GFWRS SQ +  S
Sbjct: 123 DEAVIALEKEMWSRFYSGGFWRSLSQAETAS 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GVU46.8e-84100.00uncharacterized protein LOC111457605 OS=Cucurbita moschata OX=3662 GN=LOC1114576... [more]
A0A5D3DQ131.0e-5570.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LGV01.0e-5572.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1[more]
A0A1S4DUJ22.2e-5066.88uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=... [more]
A0A6J1J6H89.0e-4461.64uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788... [more]
Match NameE-valueIdentityDescription
AT3G11690.11.3e-2644.69unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G27180.12.8e-2139.53unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G06380.13.1e-2041.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33264:SF8EXPRESSED PROTEINcoord: 10..153
NoneNo IPR availablePANTHERPTHR33264EXPRESSED PROTEINcoord: 10..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G005490.1CmoCh06G005490.1mRNA