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CmoCh06G005490 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA ATGTCGAATAAGGTTATGTTCCGTCCGCCATTGTCGAAACGTGAGCAACCACTGTTACGGAGCAAATCCATACCTGGAAGCCTCCGGTTCGCGGAGGTTGCTGGCGGCACAACCGCCGAGTGCGCTGCTGTGTGCTGTTGTTGTCCTTGCTTTGTCCTCCACTTCCTCGTCCTCGCCATTTACAAGGTTCCGGCCGGGCTCTGCCGCCGCGCTTTAAGGACGAGGCGCCGGCATAGTCTAAGGAAGGGAACTCTTCCGTCGAGGCGCGGGCGGTGCTCCGCCTGCAGTTACGACGAGGCGGATCTTCAGATTCTTACCGGCGGAAAAGCGATGCACGCATCGGAACTGAAAGGTAAAAAATCGGACGAAACGGAAAGGAAAGTTATGGAACTGGAAACAGAGATGTGGGAGACTTTTTACGGTACTGGTTTCTGGAGAAGCCCCTCTCAGAGAGATCAAATTTCAGATTCTATATGA MSNKVMFRPPLSKREQPLLRSKSIPGSLRFAEVAGGTTAECAAVCCCCPCFVLHFLVLAIYKVPAGLCRRALRTRRRHSLRKGTLPSRRGRCSACSYDEADLQILTGGKAMHASELKGKKSDETERKVMELETEMWETFYGTGFWRSPSQRDQISDSI Homology
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A6J1GVU4 (uncharacterized protein LOC111457605 OS=Cucurbita moschata OX=3662 GN=LOC111457605 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55 Identity = 112/158 (70.89%), Postives = 133/158 (84.18%), Query Frame = 0
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 1.0e-55 Identity = 114/158 (72.15%), Postives = 131/158 (82.91%), Query Frame = 0
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1) HSP 1 Score: 208.4 bits (529), Expect = 2.2e-50 Identity = 105/157 (66.88%), Postives = 124/157 (78.98%), Query Frame = 0
BLAST of CmoCh06G005490 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 9.0e-44 Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = 0
BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26 Identity = 80/179 (44.69%), Postives = 97/179 (54.19%), Query Frame = 0
BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 99.4 bits (246), Expect = 2.8e-21 Identity = 68/172 (39.53%), Postives = 89/172 (51.74%), Query Frame = 0
BLAST of CmoCh06G005490 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 95.9 bits (237), Expect = 3.1e-20 Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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