CmoCh06G005480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase RHF2A-like
Location	Cmo_Chr06: 2654669 .. 2660062 (-)
RNA-Seq Expression	CmoCh06G005480
Synteny	CmoCh06G005480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTTAAAGCAATAACAATCAATACCCATTATTAAAGGTGAAGGGGCATTTGTCTTGTGCCTTGCTTTTATCCTTTTTTTTTTCTCTCCGATTATCATTTTTCTTCTTTCTTCCTTGGTGGATTCTGGGGTTATTAAGATTTGGTGATGTGTTTCCCTAGCAGAGATTGATTTTCTCTGGAACAGGGGAATTTCTGAAGCTCGATCCGATTCGTTTTATGGGTTTTTTTCGTTGAATTTCTTCAACCCATCTTCTGGGAATTTCTCAATTGTTTAATCGAGGTAAACCCATAAGTTATTTTGCACGGTTCTCTAATGTGATGCGATGCGATGATCTTTAATTTATTCCCGCTCTTTAATTTCAAAATTTCATCGAGACATTCATGGAAATCGAATCTTGTTCTAGTTGGTGAAATCGGATTATGTTATTTGATCAAGGAAGTCGTGAATCGTGATGGATTTGATCGGATTTGGATTGTGTGTTCTTGTGTAAATTAGGGTTAAATTGATTATGGTGTTGATGAACTTTAGGTTTTGGAGATGGAGGAAGAGAAGGATTCTGAGAATCGTTTGACATCGGCTGCTGCGTTTGTGGAAGGGGGAATTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCTACGGTACAATGATTGAGCCATTTATATCTTTATTGATTGTACCTTCCTTCCTTTTTTCTTGATGCAAAAAGTGGGGGAAAAAGAGTGAAAATGCCCACTTATTTCCACAGTGATTGTATGAATATGAACATGAACATGAACATTCCATTACTTATGATTCTTGTCTTGTAGGTTACTGCTTGCAAGCATGAGTTTCACCTCCAATGCATCCTTGAGTGGTATGATATAAGTGTTGCTTTCTTCTAAATTGTTACTGTTTATCATATGCACCTGGCCAGCAACTCCTGTTGAGTTTGGTTGTTCTGTTTATCCGAGTTACAATCGTTCTTGTTTCATGGATTTGGGAATCTTTTGTTAAATGTATTGTGAGTTAATGTGTGATGCATTTGGAACTTTGTTCTTGTGTTCTTGAGAAGTGACTTAATCTGATTGTTCTGTTACCTGTGATTGTTGATAATATTGTTCGTTGGGACTGGCAACGAAGGCATACTTGTGATATTGAATTGCTCGTTTGATATGCAGGTGCCAGAGAAGTTCTCAATGTCCTATGTGTTGGCAATCTATCAGCCTGAAGGACCCGACCAGGTTTGCTTTTTTACTTCCATGTGATGCATCTGCTGTTTTGCGGGTTTTGAATGTTATGGCGTTTGTTTACGTGTTTATGTTTTGGCAGTCAAGAGTTGTTGGAGGCGGTTGAACGAGAGAGGAATATAAGGGTCACTCCGGTGAGGAATACTGCTGTGTTTCATCATCCAGCTATTGGCAATTTTGAGTTGCAACATGTTCGTTTCTCTTCTTGCCTTTTTACCTTTTCGAGTTTTGAAGATATTGGAATTGTCGAAGATGATGTTTTCTTCTAATGCAGCTACCACTGGGTGTTACTAATGCCGAGCTTGAAGAGCGAATAATCCAGCACCTGGCTGCAGCTGCTGCAATGGGGAGGGCACACCATATGGGTCGAAGAGAAGTGCAGAGGAGTCAATCATCATCTCATGGACGTCCTCATTTCTTGGTTTTCTCCACTCATCCCGGTGGACCTCCATCTGAGAATGTCTCAGCCTCCGAAGGGGGCACTGATCCAGCAGGGATTACTATGGCTAGCCCCTCTAGCCCACGGACACCTCGTGGGGATGAACCATCACAGCACATTGCACAGTTTCAGTCCATTCAGACTGACCAAATTTCTCGCTCAGCATCTGGATCCAACTTTTCAACCAATCGGCGAGGAGCTTCATCTAGCGTTCGGTATATAATTGTCTCAAACGATCTTGATATGACTTCTTTGTTGCAAGCATTTATTTATTAATAGTGATTCTTCATTCACAGAATCTCCACTAGTGATTCTCCATCTTCAAATCTGGATAGAGCTGGGCCTTCTGAATTTCAGTCATTTTCTGAATCTCTTAAATCAAGACTTAATGCAGCGTCCACAAGGTATATGTGTGTTTTAAATTCTTGATGGATATGAACTCACACACATTACACACATAATGAAGTCACAACATTATAATTAGCTGTTCTGAGAGCTTTCTGGTTCTAAAGGTACAAAGAATCAATTTCGAAGAGTACAAGAGGATGGAAGGAGCGGCTATTCTCACGCAACTCTTCCATGTCTGAACTTGGTTCCGAAGTTCGAAGAGAAGTAAATGCAGGAATTGCCAGTGTATCACGTATGATGCAACGTCTTGAAACCAGAGATGATGGTGTTACAAATCAAGATTCTAATGAGCCGGGTGGCCACGTTAGAAGAGAGAGCAGCCCAGAGAACTCTTTAAACGACAAAAGTGCTACAGCCTCTTGTGCTGCAACGTCTGCCGAGCGTTAAATCATTACGTATTAATTTTGGCAAATGCATCTGTCGTCAGCATCTTATTTCTTAAGGTGAGTAACTAAACACTATACCATTTATTAGCCTGCCAGTTTGGATACATATGAGTTCCTCTTAATTTTTGCATCTTTTTGGTGTCTGATGCCAGTTGGTTTGGTGCACCTTATACACACTGCTATCAGTTTGTTGTTTAAAAAGAAACATAAACTCACATGAGAAAGAAAGTCGTGATATCGATACAGATCTCGGCGAAAAACGAAAATATCATGGGATAATCAACAATCGAGGGGATTCATTAAAATGAATCGAGGTGGATGGAAAATCACCTCTTCCATCTTTCATCATAGTAGGACATTCCCCATTTGGAGCTAAACTAAACAAAAAGTGACTTCTCGAAAGGATGTGATTTTTATCCTTGTCTTATACAACGGACCCACCATTGTTTGCCCGAGCCCATAGATCAGCTATAGACAAGTCAATGGTGTCATTCTGCCACGAGCAACTGACCATCCTAATCTTCTTAGCGACTTTTAACCTTCTCGAACACGACAAAGAGAATGGGGTGTGGGAGTGGAAGTAGCAAGAAGGAATTAAGATTAACGAAAGAATATATTGGAAGGTTTCAAACATCAATACAACTATGACAAGAGTTTGAGAAACCGTGCTAAGGGACTTCGATAGGTATCCTAATAGGCAAGGTTCTTCTAGGATGTAAGTTTTACGACCGGATCTGTTGGATCAAGAAAGCGTATAAACAATTTAAGCTCCTTTAACGCAATGATCATCAAACACCTTAGAAAAACTTTTGTAATGAGATGATTTCGAACTCAATGCTGCAACCACCTAGCCAAGAGAGCAAAAAAATTTCAGTTTCATTTATGATCTTGAAATCTTCACTCTAGAACACCTTAGAAAAGTTCTTAAATGTCATTTTCAAACTCTTTGTAATGAGATGTTTCTTTAAACATCTTATTGATTCATGTTCATCTGTTGTTTTCCATTTAGTTGATGTTCAACATTTATACTATAATTTGTTATCTGACGTTGTTAATATAGGTTAGTAGAAGCTAAAGTCTCATTTTGTTTTCTGTCATGCTTAAACAAATTTAAAATAGTTAGACCAAGAACCTTGAAGCAAGATTGTGTCATGTATGCATTGTCAATACTAGTTGAGGTCATTTGTTGGTATTTGTGGGGTAATAACGTCTTAGACGGTAAGATCTCACTTTGATTGGAGAGAGGAATGAGTGCCAGTGAGGACGCTGGGCCCTCGAAAGGGTGGATTGTGAGATCCCACATTGGTTGGGGAGGGGAACGAAACATTCTTTATAAGGGTGTACACGTTTTAAAAACCTTGAGGGGAAGTTTGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGGACCATTACAAATGGTGTACCAGAGCCAACACCGGATGGTGTGCCAGCGAGGACGTTGGGCCCCGAGGGGGGTGGATTGTAAGATCCCACATCGATTGGAGAGAAGAATGAGTACCAGCAAACACTCTGGGTCCTTGAAAGAAGGTGGATTGTGAGATCCCACGTCAGTTGGAGAGGGGAATGAGACATTCTTTATAATGGGTGTGGAAACTTCTCTTTAGTAGATGCGTTTTAAAAATCTTGAGGGGAATCTTGAAAGAGAAAGCTCAAAGAGGATAATATCTACTAACGGTGGACTTGGGCCGTTACAAATGGTATAAGAGCCAGATATCGGGTGGTGTGCCAGTGAAGACTTTGGGCCCTGAAAGGGGGTGGATTGTGAGATCCCCCTCGGTTGGAGAGGGGAACAAAGCTTTCCCTATAGGAGTGTGGAAACCTCTCCTTAGTAGCCGCGTTTTAAAGACCTTAAGAGAAAATTTGAAAGGGAAAGCCGAAAGAGGACCATATCTCCTAATCGGCCTCAAAAAGAATTCAAAAGGGCAGTAAAAAAGAAAAGAAAAGCGGAAGGTAGCCCACTGCAAAAGGAGCACAAAATGGGGACGCCCTAAAATTATGGAAAAGTTCTCCAGTTATTATCTTTAAGAATCATTAGCCATAGGGAAATGTGAAAGTGAAAGCTAGCCAATAGTAAACATGATGTTAATCCCTCCATTGAAGGCACCTTGGTCTATTCTATAGTTTGTATTGTATAATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTAGAAACCTTTCCCTAGCAAACCCGTTAGGAGAACTTGAAAGAGAAAACTCGAAAGAGAAAACTCAGAACAATGTTTGCTAGCGGTAGGCAAGCAAAGAACTTATAATTACTCAACTAGTCAAGACATTTGTCATCAACTAAGATGACAACCGAGCTTACTTGGAACTATGAGTTTTTGAAACGATGTTTATTATACGAGCTTCTCCATTTTTTGGTCTGATGTGAAGATGAATTATGAAGCAGGTGAAACTATATATATATATTCTCCAGAGGTGATATGCTGAGGAACAGATGCGTTTGCAGACAAAAAGGGTTGAAGAATTTCATGTTGTTGATTGTTGTCTGAACTGGAAGAAAAAAAAGAAAAAAACCCAATAAGGAAGAAGAAAGAGGGGAGGGAGATTGGGAGAAAAGCTTACCATCTGGACATCTTGTATCTAACTTTTTCTATACACAAAAACACATTAAGAAAATCTCTGTCTCGATGGGTTTTACCCTTTTCGAATTGAATTTTATTTGAATGTTCATATTAAAAAGTGTTTCCCTCGAGTAATGATTCTTCAACTGTTCGTTTAAACATAAGACTACTTATGGCTTTCATAGCTGATGCTCGTGTGCATACCAAACAAGTTTTATCTTTATCAGCCGTGTCTTAGTCCCGGTGCTACTGATCATCG

mRNA sequence

AGGTTAAAGCAATAACAATCAATACCCATTATTAAAGGTGAAGGGGCATTTGTCTTGTGCCTTGCTTTTATCCTTTTTTTTTTCTCTCCGATTATCATTTTTCTTCTTTCTTCCTTGGTGGATTCTGGGGTTATTAAGATTTGGTGATGTGTTTCCCTAGCAGAGATTGATTTTCTCTGGAACAGGGGAATTTCTGAAGCTCGATCCGATTCGTTTTATGGGTTTTTTTCGTTGAATTTCTTCAACCCATCTTCTGGGAATTTCTCAATTGTTTAATCGAGGTTTTGGAGATGGAGGAAGAGAAGGATTCTGAGAATCGTTTGACATCGGCTGCTGCGTTTGTGGAAGGGGGAATTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCTACGGTTACTGCTTGCAAGCATGAGTTTCACCTCCAATGCATCCTTGAGTGGTGCCAGAGAAGTTCTCAATGTCCTATGTGTTGGCAATCTATCAGCCTGAAGGACCCGACCAGGTTTGCTTTTTTACTTCCATGTGATGCATCTGCTGTTTTGCGGGTTTTGAATGTTATGGCGTTTGTTTACGTTCAAGAGTTGTTGGAGGCGGTTGAACGAGAGAGGAATATAAGGGTCACTCCGGTGAGGAATACTGCTGTGTTTCATCATCCAGCTATTGGCAATTTTGAGTTGCAACATCTACCACTGGGTGTTACTAATGCCGAGCTTGAAGAGCGAATAATCCAGCACCTGGCTGCAGCTGCTGCAATGGGGAGGGCACACCATATGGGTCGAAGAGAAGTGCAGAGGAGTCAATCATCATCTCATGGACGTCCTCATTTCTTGGTTTTCTCCACTCATCCCGGTGGACCTCCATCTGAGAATGTCTCAGCCTCCGAAGGGGGCACTGATCCAGCAGGGATTACTATGGCTAGCCCCTCTAGCCCACGGACACCTCGTGGGGATGAACCATCACAGCACATTGCACAGTTTCAGTCCATTCAGACTGACCAAATTTCTCGCTCAGCATCTGGATCCAACTTTTCAACCAATCGGCGAGGAGCTTCATCTAGCGTTCGAATCTCCACTAGTGATTCTCCATCTTCAAATCTGGATAGAGCTGGGCCTTCTGAATTTCAGTCATTTTCTGAATCTCTTAAATCAAGACTTAATGCAGCGTCCACAAGGTACAAAGAATCAATTTCGAAGAGTACAAGAGGATGGAAGGAGCGGCTATTCTCACGCAACTCTTCCATGTCTGAACTTGGTTCCGAAGTTCGAAGAGAAGTAAATGCAGGAATTGCCAGTGTATCACGTATGATGCAACGTCTTGAAACCAGAGATGATGGTGTTACAAATCAAGATTCTAATGAGCCGGGTGGCCACGTTAGAAGAGAGAGCAGCCCAGAGAACTCTTTAAACGACAAAAGTGCTACAGCCTCTTGTGCTGCAACGTCTGCCGAGCGTTAAATCATTACGTATTAATTTTGGCAAATGCATCTGTCGTCAGCATCTTATTTCTTAAGGTGAAACTATATATATATATTCTCCAGAGGTGATATGCTGAGGAACAGATGCGTTTGCAGACAAAAAGGGTTGAAGAATTTCATGTTGTTGATTGTTGTCTGAACTGGAAGAAAAAAAAGAAAAAAACCCAATAAGGAAGAAGAAAGAGGGGAGGGAGATTGGGAGAAAAGCTTACCATCTGGACATCTTGTATCTAACTTTTTCTATACACAAAAACACATTAAGAAAATCTCTGTCTCGATGGGTTTTACCCTTTTCGAATTGAATTTTATTTGAATGTTCATATTAAAAAGTGTTTCCCTCGAGTAATGATTCTTCAACTGTTCGTTTAAACATAAGACTACTTATGGCTTTCATAGCTGATGCTCGTGTGCATACCAAACAAGTTTTATCTTTATCAGCCGTGTCTTAGTCCCGGTGCTACTGATCATCG

Coding sequence (CDS)

ATGGAGGAAGAGAAGGATTCTGAGAATCGTTTGACATCGGCTGCTGCGTTTGTGGAAGGGGGAATTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCTACGGTTACTGCTTGCAAGCATGAGTTTCACCTCCAATGCATCCTTGAGTGGTGCCAGAGAAGTTCTCAATGTCCTATGTGTTGGCAATCTATCAGCCTGAAGGACCCGACCAGGTTTGCTTTTTTACTTCCATGTGATGCATCTGCTGTTTTGCGGGTTTTGAATGTTATGGCGTTTGTTTACGTTCAAGAGTTGTTGGAGGCGGTTGAACGAGAGAGGAATATAAGGGTCACTCCGGTGAGGAATACTGCTGTGTTTCATCATCCAGCTATTGGCAATTTTGAGTTGCAACATCTACCACTGGGTGTTACTAATGCCGAGCTTGAAGAGCGAATAATCCAGCACCTGGCTGCAGCTGCTGCAATGGGGAGGGCACACCATATGGGTCGAAGAGAAGTGCAGAGGAGTCAATCATCATCTCATGGACGTCCTCATTTCTTGGTTTTCTCCACTCATCCCGGTGGACCTCCATCTGAGAATGTCTCAGCCTCCGAAGGGGGCACTGATCCAGCAGGGATTACTATGGCTAGCCCCTCTAGCCCACGGACACCTCGTGGGGATGAACCATCACAGCACATTGCACAGTTTCAGTCCATTCAGACTGACCAAATTTCTCGCTCAGCATCTGGATCCAACTTTTCAACCAATCGGCGAGGAGCTTCATCTAGCGTTCGAATCTCCACTAGTGATTCTCCATCTTCAAATCTGGATAGAGCTGGGCCTTCTGAATTTCAGTCATTTTCTGAATCTCTTAAATCAAGACTTAATGCAGCGTCCACAAGGTACAAAGAATCAATTTCGAAGAGTACAAGAGGATGGAAGGAGCGGCTATTCTCACGCAACTCTTCCATGTCTGAACTTGGTTCCGAAGTTCGAAGAGAAGTAAATGCAGGAATTGCCAGTGTATCACGTATGATGCAACGTCTTGAAACCAGAGATGATGGTGTTACAAATCAAGATTCTAATGAGCCGGGTGGCCACGTTAGAAGAGAGAGCAGCCCAGAGAACTCTTTAAACGACAAAAGTGCTACAGCCTCTTGTGCTGCAACGTCTGCCGAGCGTTAA

Protein sequence

MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQSIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNAASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVTNQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER

Homology

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BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot
Match: Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.3e-100
Identity = 225/406 (55.42%), Postives = 260/406 (64.04%), Query Frame = 0


Query: 3   EEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQ 62
           E   SE  LTSAAAFVEGGIQ+ACDDACSICLE FCESDPST+T+CKHE+HLQCILEWCQ
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 63  RSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTP 122
           RSSQCPMCWQSISLKDPT                         QELLEAVE+ERN R  P
Sbjct: 66  RSSQCPMCWQSISLKDPTS------------------------QELLEAVEQERNFRFNP 125

Query: 123 VRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSS 182
            RN  +F HP +G+FELQHLP+GV NAE+EERIIQHLAAAAAMGRA H  RRE  RS+SS
Sbjct: 126 TRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSS 185

Query: 183 SHGRPHFLVFSTHPGG---PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQ- 242
           S G   F+VFS+ P     PP   + +S    D +       + P    G+   Q   Q 
Sbjct: 186 SQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTV---SNLPHNALGEGSHQSNTQP 245

Query: 243 FQSIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRL 302
             S    Q+S SAS SN            R     SPS   DRAGPSE QSFSESLKSRL
Sbjct: 246 PTSSHPRQVSPSASDSN-----------SRPLNQSSPSEQ-DRAGPSELQSFSESLKSRL 305

Query: 303 NAASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRD-- 362
           NA STRYKESISK+TR WK+RLFSRN+SM++LGSEV+REV+AGIA+VSRMM+RLETR+  
Sbjct: 306 NAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENS 365

Query: 363 --------DGVTNQDSNEPGGHVRRESSPENSLNDKSATASCAATS 395
                   D   N        H R  +  E+S+N++    +CA  S
Sbjct: 366 RPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGS 372

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BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot
Match: Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.2e-34
Identity = 122/344 (35.47%), Postives = 174/344 (50.58%), Query Frame = 0


Query: 12  TSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCW 71
           +S+A  V        DDACSICLE F   DPSTVT+CKHE+HLQCI+EW QRS +CP+CW
Sbjct: 28  SSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICW 87

Query: 72  QSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTPVRNTA-VFH 131
           Q   L+DP                          QELL AVE+ER ++   + +++ +  
Sbjct: 88  QLFVLRDPAS------------------------QELLAAVEKERLLKTRNISSSSPISI 147

Query: 132 HPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSSSHGRPHFL 191
           H +  +F  +      ++   +E+ ++HL  AA   R   + RR+ Q S S        L
Sbjct: 148 HHSHDDFHSEEEESQFSS--FDEQFLRHLTEAA--HRRCLLRRRDGQISSS--------L 207

Query: 192 VFSTHPGG-PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQSIQTDQISR 251
           V S+ P    P++ V+                S+P    G      ++   SI  D    
Sbjct: 208 VSSSDPTTIHPTDLVNLYR--LSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPAD---- 267

Query: 252 SASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNAASTRYKESI 311
           S +GS             RIS   SPS +       E  S  E++KS+L AAS +YKESI
Sbjct: 268 SNNGS-------------RISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESI 316

Query: 312 SKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLE 354
           SKS +G KE+L +RN+S+ EL   V+RE+NAGIA V+RM++R++
Sbjct: 328 SKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMD 316

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BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot
Match: Q2HIJ8 (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RHB1A PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-09
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 27  DDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCWQSISLKD 79
           +D C IC ED+   +P   T C+HEFHL C+LEW +RS +CP+C + +   D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187

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BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot
Match: Q8LE94 (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-08
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 27  DDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMC 71
           +D C  CLE++   +P  VT C H FHL CI EW +RS  CP+C
Sbjct: 178 EDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVC 221

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BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot
Match: Q93ZF6 (E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-07
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 28  DACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCWQSISLKD 79
           D C ICLE++   +P  +T C H+FHL CIL W +RS  CP+C + + L +
Sbjct: 102 DECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVCDKELVLTE 152

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BLAST of CmoCh06G005480 vs. ExPASy TrEMBL
Match: A0A6J1F325 (E3 ubiquitin-protein ligase RHF2A-like OS=Cucurbita moschata OX=3662 GN=LOC111441910 PE=4 SV=1)

HSP 1 Score: 698.0 bits (1800), Expect = 2.3e-197
Identity = 372/397 (93.70%), Postives = 372/397 (93.70%), Query Frame = 0


Query: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60
           MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 61  CQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRV 120
           CQRSSQCPMCWQSISLKDPT                         QELLEAVERERNIRV
Sbjct: 61  CQRSSQCPMCWQSISLKDPTS------------------------QELLEAVERERNIRV 120

Query: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180
           TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ
Sbjct: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180

Query: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240
           SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ
Sbjct: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240

Query: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300
           SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA
Sbjct: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300

Query: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360
           ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT
Sbjct: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360

Query: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 398
           NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER
Sbjct: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 373

[Close]

BLAST of CmoCh06G005480 vs. ExPASy TrEMBL
Match: A0A6J1KY20 (E3 ubiquitin-protein ligase RHF2A-like OS=Cucurbita maxima OX=3661 GN=LOC111498605 PE=4 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 2.2e-195
Identity = 369/397 (92.95%), Postives = 369/397 (92.95%), Query Frame = 0


Query: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60
           MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 61  CQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRV 120
           CQRSSQCPMCWQSISLKDPT                         QELLEAVERERNIRV
Sbjct: 61  CQRSSQCPMCWQSISLKDPTS------------------------QELLEAVERERNIRV 120

Query: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180
           TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHL AAAAMGRAHHMGRREVQRSQ
Sbjct: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLTAAAAMGRAHHMGRREVQRSQ 180

Query: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240
           SSSHGRPHFLVFSTHPGGP SENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ
Sbjct: 181 SSSHGRPHFLVFSTHPGGPSSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240

Query: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300
           SIQTDQISRSASGSNFS NRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA
Sbjct: 241 SIQTDQISRSASGSNFSANRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300

Query: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360
           ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT
Sbjct: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360

Query: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 398
           NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER
Sbjct: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 373

[Close]

BLAST of CmoCh06G005480 vs. ExPASy TrEMBL
Match: A0A0A0LB49 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G783860 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.5e-175
Identity = 337/397 (84.89%), Postives = 349/397 (87.91%), Query Frame = 0


Query: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60
           MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 61  CQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRV 120
           CQRSSQCPMCWQSISLKDPT                         QELLEAVERERNIR 
Sbjct: 61  CQRSSQCPMCWQSISLKDPTS------------------------QELLEAVERERNIRA 120

Query: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180
           TPVRNTAVFHHPA+GNFELQHLPLGV NAELEERIIQHLAAAAAMGR HH+GRRE  RS+
Sbjct: 121 TPVRNTAVFHHPALGNFELQHLPLGVNNAELEERIIQHLAAAAAMGRTHHIGRRE-GRSR 180

Query: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240
           SSSHGRPHFLVFSTHPGGPP E+VSAS   T+PAGIT+ASPSSP TPRGDEPSQHIAQF 
Sbjct: 181 SSSHGRPHFLVFSTHPGGPP-EHVSASGVHTEPAGITVASPSSPLTPRGDEPSQHIAQFP 240

Query: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300
           SIQTD +SRSASGSNFS +RRGASS +RISTSDSPS NLDRAGPSEFQSFSESLKSRLNA
Sbjct: 241 SIQTDHVSRSASGSNFSASRRGASSGIRISTSDSPSPNLDRAGPSEFQSFSESLKSRLNA 300

Query: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360
            STRYKESISKSTRGWKERLFSRN+SMSELGSEVRREVNAGIASVSRMMQRLETR+DGVT
Sbjct: 301 VSTRYKESISKSTRGWKERLFSRNTSMSELGSEVRREVNAGIASVSRMMQRLETREDGVT 360

Query: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 398
           NQ SNE GGH RRES+PENSL D SA  SCAATSAER
Sbjct: 361 NQGSNEQGGHNRRESNPENSLTDSSAPTSCAATSAER 371

[Close]

BLAST of CmoCh06G005480 vs. ExPASy TrEMBL
Match: A0A1S3B7P6 (E3 ubiquitin-protein ligase RHF2A-like OS=Cucumis melo OX=3656 GN=LOC103486708 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.2e-174
Identity = 337/397 (84.89%), Postives = 349/397 (87.91%), Query Frame = 0


Query: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60
           MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 61  CQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRV 120
           CQRSSQCPMCWQSISLKDPT                         QELLEAVERERNIR 
Sbjct: 61  CQRSSQCPMCWQSISLKDPTS------------------------QELLEAVERERNIRA 120

Query: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180
           TPVRNTAVFHHPA+GNFELQHLPLGV N+ELEERIIQHLAAAAAMGR HH+GRRE  RS+
Sbjct: 121 TPVRNTAVFHHPALGNFELQHLPLGVNNSELEERIIQHLAAAAAMGRTHHIGRRE-GRSR 180

Query: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240
           SSSHGRPHFLVFSTHPGGPP E+VSAS   T+PAGIT+ASPSSP TPRGDEPS HIAQF 
Sbjct: 181 SSSHGRPHFLVFSTHPGGPP-EHVSASGVHTEPAGITVASPSSPLTPRGDEPSHHIAQFP 240

Query: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300
           SIQTD +SRSASGSNFS +RRGASS VRISTSDSPS NLDRAGPSEFQSFSESLKSRLNA
Sbjct: 241 SIQTDHVSRSASGSNFSASRRGASSGVRISTSDSPSPNLDRAGPSEFQSFSESLKSRLNA 300

Query: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360
            STRYKESISKSTRGWKERLFSRN+SMSELGSEVRREVNAGIASVSRMMQRLETR+DGVT
Sbjct: 301 VSTRYKESISKSTRGWKERLFSRNTSMSELGSEVRREVNAGIASVSRMMQRLETREDGVT 360

Query: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 398
           NQ SNE GGH RRES+PENSLND SA  SCAATSAER
Sbjct: 361 NQGSNEQGGHNRRESNPENSLNDSSAPTSCAATSAER 371

[Close]

BLAST of CmoCh06G005480 vs. ExPASy TrEMBL
Match: A0A5A7TKD8 (E3 ubiquitin-protein ligase RHF2A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004880 PE=4 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 1.2e-174
Identity = 337/397 (84.89%), Postives = 349/397 (87.91%), Query Frame = 0


Query: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60
           MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW
Sbjct: 1   MEEEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEW 60

Query: 61  CQRSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRV 120
           CQRSSQCPMCWQSISLKDPT                         QELLEAVERERNIR 
Sbjct: 61  CQRSSQCPMCWQSISLKDPTS------------------------QELLEAVERERNIRA 120

Query: 121 TPVRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQ 180
           TPVRNTAVFHHPA+GNFELQHLPLGV N+ELEERIIQHLAAAAAMGR HH+GRRE  RS+
Sbjct: 121 TPVRNTAVFHHPALGNFELQHLPLGVNNSELEERIIQHLAAAAAMGRTHHIGRRE-GRSR 180

Query: 181 SSSHGRPHFLVFSTHPGGPPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQ 240
           SSSHGRPHFLVFSTHPGGPP E+VSAS   T+PAGIT+ASPSSP TPRGDEPS HIAQF 
Sbjct: 181 SSSHGRPHFLVFSTHPGGPP-EHVSASGVHTEPAGITVASPSSPLTPRGDEPSHHIAQFP 240

Query: 241 SIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNA 300
           SIQTD +SRSASGSNFS +RRGASS VRISTSDSPS NLDRAGPSEFQSFSESLKSRLNA
Sbjct: 241 SIQTDHVSRSASGSNFSASRRGASSGVRISTSDSPSPNLDRAGPSEFQSFSESLKSRLNA 300

Query: 301 ASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRDDGVT 360
            STRYKESISKSTRGWKERLFSRN+SMSELGSEVRREVNAGIASVSRMMQRLETR+DGVT
Sbjct: 301 VSTRYKESISKSTRGWKERLFSRNTSMSELGSEVRREVNAGIASVSRMMQRLETREDGVT 360

Query: 361 NQDSNEPGGHVRRESSPENSLNDKSATASCAATSAER 398
           NQ SNE GGH RRES+PENSLND SA  SCAATSAER
Sbjct: 361 NQGSNEQGGHNRRESNPENSLNDSSAPTSCAATSAER 371

[Close]

BLAST of CmoCh06G005480 vs. TAIR 10
Match: AT5G22000.2 (RING-H2 group F2A )

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-101
Identity = 224/402 (55.72%), Postives = 259/402 (64.43%), Query Frame = 0


Query: 7   SENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQ 66
           SE  LTSAAAFVEGGIQ+ACDDACSICLE FCESDPST+T+CKHE+HLQCILEWCQRSSQ
Sbjct: 10  SEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQ 69

Query: 67  CPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTPVRNT 126
           CPMCWQSISLKDPT                         QELLEAVE+ERN R  P RN 
Sbjct: 70  CPMCWQSISLKDPTS------------------------QELLEAVEQERNFRFNPTRNA 129

Query: 127 AVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSSSHGR 186
            +F HP +G+FELQHLP+GV NAE+EERIIQHLAAAAAMGRA H  RRE  RS+SSS G 
Sbjct: 130 TIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGH 189

Query: 187 PHFLVFSTHPGG---PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQ-FQSI 246
             F+VFS+ P     PP   + +S    D +       + P    G+   Q   Q   S 
Sbjct: 190 QQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTV---SNLPHNALGEGSHQSNTQPPTSS 249

Query: 247 QTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNAAS 306
              Q+S SAS SN            R     SPS   DRAGPSE QSFSESLKSRLNA S
Sbjct: 250 HPRQVSPSASDSN-----------SRPLNQSSPSEQ-DRAGPSELQSFSESLKSRLNAVS 309

Query: 307 TRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRD------ 366
           TRYKESISK+TR WK+RLFSRN+SM++LGSEV+REV+AGIA+VSRMM+RLETR+      
Sbjct: 310 TRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPST 369

Query: 367 ----DGVTNQDSNEPGGHVRRESSPENSLNDKSATASCAATS 395
               D   N        H R  +  E+S+N++    +CA  S
Sbjct: 370 ASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGS 372

[Close]

BLAST of CmoCh06G005480 vs. TAIR 10
Match: AT5G22000.1 (RING-H2 group F2A )

HSP 1 Score: 366.3 bits (939), Expect = 3.1e-101
Identity = 225/406 (55.42%), Postives = 260/406 (64.04%), Query Frame = 0


Query: 3   EEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQ 62
           E   SE  LTSAAAFVEGGIQ+ACDDACSICLE FCESDPST+T+CKHE+HLQCILEWCQ
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 63  RSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTP 122
           RSSQCPMCWQSISLKDPT                         QELLEAVE+ERN R  P
Sbjct: 66  RSSQCPMCWQSISLKDPTS------------------------QELLEAVEQERNFRFNP 125

Query: 123 VRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSS 182
            RN  +F HP +G+FELQHLP+GV NAE+EERIIQHLAAAAAMGRA H  RRE  RS+SS
Sbjct: 126 TRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSS 185

Query: 183 SHGRPHFLVFSTHPGG---PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQ- 242
           S G   F+VFS+ P     PP   + +S    D +       + P    G+   Q   Q 
Sbjct: 186 SQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTV---SNLPHNALGEGSHQSNTQP 245

Query: 243 FQSIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRL 302
             S    Q+S SAS SN            R     SPS   DRAGPSE QSFSESLKSRL
Sbjct: 246 PTSSHPRQVSPSASDSN-----------SRPLNQSSPSEQ-DRAGPSELQSFSESLKSRL 305

Query: 303 NAASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRD-- 362
           NA STRYKESISK+TR WK+RLFSRN+SM++LGSEV+REV+AGIA+VSRMM+RLETR+  
Sbjct: 306 NAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENS 365

Query: 363 --------DGVTNQDSNEPGGHVRRESSPENSLNDKSATASCAATS 395
                   D   N        H R  +  E+S+N++    +CA  S
Sbjct: 366 RPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGS 372

[Close]

BLAST of CmoCh06G005480 vs. TAIR 10
Match: AT5G22000.3 (RING-H2 group F2A )

HSP 1 Score: 366.3 bits (939), Expect = 3.1e-101
Identity = 225/406 (55.42%), Postives = 260/406 (64.04%), Query Frame = 0


Query: 3   EEKDSENRLTSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQ 62
           E   SE  LTSAAAFVEGGIQ+ACDDACSICLE FCESDPST+T+CKHE+HLQCILEWCQ
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQ 65

Query: 63  RSSQCPMCWQSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTP 122
           RSSQCPMCWQSISLKDPT                         QELLEAVE+ERN R  P
Sbjct: 66  RSSQCPMCWQSISLKDPTS------------------------QELLEAVEQERNFRFNP 125

Query: 123 VRNTAVFHHPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSS 182
            RN  +F HP +G+FELQHLP+GV NAE+EERIIQHLAAAAAMGRA H  RRE  RS+SS
Sbjct: 126 TRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSS 185

Query: 183 SHGRPHFLVFSTHPGG---PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQ- 242
           S G   F+VFS+ P     PP   + +S    D +       + P    G+   Q   Q 
Sbjct: 186 SQGHQQFMVFSSQPNASSPPPHPPMPSSPSQRDESDTV---SNLPHNALGEGSHQSNTQP 245

Query: 243 FQSIQTDQISRSASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRL 302
             S    Q+S SAS SN            R     SPS   DRAGPSE QSFSESLKSRL
Sbjct: 246 PTSSHPRQVSPSASDSN-----------SRPLNQSSPSEQ-DRAGPSELQSFSESLKSRL 305

Query: 303 NAASTRYKESISKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLETRD-- 362
           NA STRYKESISK+TR WK+RLFSRN+SM++LGSEV+REV+AGIA+VSRMM+RLETR+  
Sbjct: 306 NAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENS 365

Query: 363 --------DGVTNQDSNEPGGHVRRESSPENSLNDKSATASCAATS 395
                   D   N        H R  +  E+S+N++    +CA  S
Sbjct: 366 RPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGS 372

[Close]

BLAST of CmoCh06G005480 vs. TAIR 10
Match: AT4G14220.1 (RING-H2 group F1A )

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-35
Identity = 122/344 (35.47%), Postives = 174/344 (50.58%), Query Frame = 0


Query: 12  TSAAAFVEGGIQEACDDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCW 71
           +S+A  V        DDACSICLE F   DPSTVT+CKHE+HLQCI+EW QRS +CP+CW
Sbjct: 28  SSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKECPICW 87

Query: 72  QSISLKDPTRFAFLLPCDASAVLRVLNVMAFVYVQELLEAVERERNIRVTPVRNTA-VFH 131
           Q   L+DP                          QELL AVE+ER ++   + +++ +  
Sbjct: 88  QLFVLRDPAS------------------------QELLAAVEKERLLKTRNISSSSPISI 147

Query: 132 HPAIGNFELQHLPLGVTNAELEERIIQHLAAAAAMGRAHHMGRREVQRSQSSSHGRPHFL 191
           H +  +F  +      ++   +E+ ++HL  AA   R   + RR+ Q S S        L
Sbjct: 148 HHSHDDFHSEEEESQFSS--FDEQFLRHLTEAA--HRRCLLRRRDGQISSS--------L 207

Query: 192 VFSTHPGG-PPSENVSASEGGTDPAGITMASPSSPRTPRGDEPSQHIAQFQSIQTDQISR 251
           V S+ P    P++ V+                S+P    G      ++   SI  D    
Sbjct: 208 VSSSDPTTIHPTDLVNLYR--LSAISHVEHQNSNPCPSPGSMTPSPVSGHSSIPAD---- 267

Query: 252 SASGSNFSTNRRGASSSVRISTSDSPSSNLDRAGPSEFQSFSESLKSRLNAASTRYKESI 311
           S +GS             RIS   SPS +       E  S  E++KS+L AAS +YKESI
Sbjct: 268 SNNGS-------------RISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESI 316

Query: 312 SKSTRGWKERLFSRNSSMSELGSEVRREVNAGIASVSRMMQRLE 354
           SKS +G KE+L +RN+S+ EL   V+RE+NAGIA V+RM++R++
Sbjct: 328 SKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMD 316

[Close]

BLAST of CmoCh06G005480 vs. TAIR 10
Match: AT4G00335.1 (RING-H2 finger B1A )

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-10
Identity = 24/52 (46.15%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 27  DDACSICLEDFCESDPSTVTACKHEFHLQCILEWCQRSSQCPMCWQSISLKD 79
           +D C IC ED+   +P   T C+HEFHL C+LEW +RS +CP+C + +   D
Sbjct: 136 EDCCPICFEDYDVENPRLTTKCEHEFHLSCLLEWIERSDRCPICDKEVVFDD 187

The following BLAST results are available for this feature:

BLAST of CmoCh06G005480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT42	4.3e-100	55.42	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ...	[more]
Q4TU14	3.2e-34	35.47	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ...	[more]
Q2HIJ8	2.1e-09	46.15	Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8LE94	3.0e-08	50.00	E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g022...	[more]
Q93ZF6	1.9e-07	45.10	E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 ...	[more]

BLAST of CmoCh06G005480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F325	2.3e-197	93.70	E3 ubiquitin-protein ligase RHF2A-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1KY20	2.2e-195	92.95	E3 ubiquitin-protein ligase RHF2A-like OS=Cucurbita maxima OX=3661 GN=LOC1114986...	[more]
A0A0A0LB49	9.5e-175	84.89	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G783860 P...	[more]
A0A1S3B7P6	1.2e-174	84.89	E3 ubiquitin-protein ligase RHF2A-like OS=Cucumis melo OX=3656 GN=LOC103486708 P...	[more]
A0A5A7TKD8	1.2e-174	84.89	E3 ubiquitin-protein ligase RHF2A-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CmoCh06G005480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22000.2	2.4e-101	55.72	RING-H2 group F2A	[more]
AT5G22000.1	3.1e-101	55.42	RING-H2 group F2A	[more]
AT5G22000.3	3.1e-101	55.42	RING-H2 group F2A	[more]
AT4G14220.1	2.3e-35	35.47	RING-H2 group F1A	[more]
AT4G00335.1	1.5e-10	46.15	RING-H2 finger B1A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 30..70 e-value: 2.0E-5 score: 34.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 29..70 e-value: 4.9E-9 score: 36.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 30..70 score: 12.135206
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 11..79 e-value: 1.5E-14 score: 54.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 349..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..397
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..290
None	No IPR available	PANTHER	PTHR46463	ZINC FINGER, RING/FYVE/PHD-TYPE	coord: 106..391 coord: 1..80
None	No IPR available	PANTHER	PTHR46463:SF27	E3 UBIQUITIN-PROTEIN LIGASE RHF2A	coord: 106..391
None	No IPR available	PANTHER	PTHR46463:SF27	E3 UBIQUITIN-PROTEIN LIGASE RHF2A	coord: 1..80
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 23..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005480.1	CmoCh06G005480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0004842	ubiquitin-protein transferase activity