CmoCh06G005440 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G005440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFra a 1-associated protein
LocationCmo_Chr06: 2634673 .. 2637312 (+)
RNA-Seq ExpressionCmoCh06G005440
SyntenyCmoCh06G005440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGGGTATGGAGAGGCGCGTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGTATGTGCATCCGTGTTCCTCTGATTTCTGTTGTCCTGTGATAATTTATTTTAACCTAACTGTTATTGTCTTTCGAATTAAGATCTTAGTTTTCTACGGAAGTGTGAAGAAAAGAAAATTGGTTCGTTCTATTTGTTGTTGGCAAAGAGAAATTGTTAAACGTAGGTTTCGTTTCTTTATTTGGAATCAAATTGGTGTGATCCACATGGCTATTCCTAAGTTTGATTTCTTCTTTATTGTTTAGGGATATATCGTAGTTCTAAATTTTGAAGTATAATGTGCTAGGCTAAGGCTGATTCCTACGACTTGTTAAGTGAACATCTGTTTGATGCGTTGAAAATTCCGAGCCATTTGGGCGGTTTAATTTCTGATTTTGTTGCCGTGATTGGTTGTTTTAATGGAATCTTAGAGGGATGGACATTGAAATTGGAAGGTGCTAGGCTTACTGTTTGACATGTGAGTGATGATTTTTCTTGGGTTATTTGTATTGAAGGTTGAAGAATCATGACTTACCGGTTACCTCATAATTTTGTTCACTATGTTTTTTGGCCTAAATGACCAACATATAAGAATATTGATTTTTTCTTCTTGGTTATTTCACACACACTCACTTTCATTTCGGGTTCCTTCTGTCGAATTTTCTTCCAAATTTTGATAATTCATCACATAGAAAATGTAGATGCTTGCAAGGGACCGGAAAGAATCAAAATTTCCACACCCATTCAACATTTCATCCTAATAATTGTAAAAGCTTCTCTGGTGGTTTATATTCTTAAAGCACATCATATGAAAATTTTACAGTGTCCTCCCATGAAGGGACCTAGCAAATGAATAAATAATGTGTTTAACGTTCACTTTCTTAAAGTGTATGGGTTTCATAATTTGAGAATGTGTTTTGGAAGATGAGAATGAGAGTAGAAACTGAGAATGAGAGGAAGGAACAGATAAATGAAAGAAGAGACAAAAACTGAGTAGAAACTGAGAATGTGTTTTGGAAGATGAGAATGAGAGTGATGAAGGGGCATATGAAATAAGAGGGTTGAATGTGCTTTTTCTATCGTTCCTTAAGCGAAGTGCAACATCTCTAAACAATTAAAGTGAAAGAATGTAGCTGAGGTTATTTAATATATAAGAGCTCCTTCACTTTAAAATCTCTTCTGCGTTGTGATATAGAAAGGCAGGTTTAGGAAAAATATGTTTCTTGGATGGAAAATTATGAAGATGACCGAGGAATGCATTTCCTGGATTGCACTTGTGCTGGCTCGGTGTTTGATGGTTGAATGACTATGACATGATTGGAACTCATTGGTTAGTGCCTTGAGCCTCATGTAGTAGAATCCATGCATCATATATTGGAAAATATTGATTAGCCCTTAGATGAATGGTGATTAGGAACTTGAAGGGCAGTGTCTGGGAATATTTTTTCTGAGCCTGCCAGACGGAAGCTATTAGAACTCGTTAATGTTGTACATGGTCGGTTGCAAACTTGAAAATGATAAATTTTTTAACCTACATTGATGCTGCTTTAATTGCATGGAAGATCAAGTTGGAAAATATAGTAATCCCTTGCTTACATCGAATTCGAGCAGCCATCTACCGTGACAAAAACCGCCAGAAAGCCTTCCACTTGATATGTTGTAAGAGGATCACATGATATGATATTGGAGCTAGGAGTGAGGAAACTCTTTTCATTTATCGGATTGAACCAGGTGCTTTTGCTTCTTTAATGTGCTATGCTAAATTCTTAACACACGATGACTTCGGTTTTTGTGTTACCATGTTTTGATAGTATGAATGTATATCATTTGATAGATAGAACCCAAAGTGGAAAATTCATTTATAAAAGAACACATGTAAGGAATTTAAGAGCTCTTCCACCCCCCTCCAATCTATCAAAACCATCAGGAACTTGTGTCCTCTAGTTACTCATCTTCCCTTTTTTAAAATTACTTGCTTCTGGTTAGTTACTTTAGGCCTCTAGGTTGCTTCCCTGCTCCAACTGTTCTCCCCTTTTAGTTCAATTAAAGTGAGCTGAAGAGCTACCTATCAACTATACGAGTCATATGACTAAGTCATAGTTGCTTTGTTTCTTTACAGGCCGGTCGAAGTGATACAGTCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGCAGCGATATTGAAGCCATTGAACACAGCCTCTTCGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGAAATGGTTTCTTTGGCTCTTTCAGAGATCCACCCCTATTCAGCAGAGAGCCTTCGTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCCGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGA

mRNA sequence

ATGGGTGGGGTATGGAGAGGCGCGTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCGGTCGAAGTGATACAGTCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGCAGCGATATTGAAGCCATTGAACACAGCCTCTTCGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGAAATGGTTTCTTTGGCTCTTTCAGAGATCCACCCCTATTCAGCAGAGAGCCTTCGTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCCGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGA

Coding sequence (CDS)

ATGGGTGGGGTATGGAGAGGCGCGTCTGGCGAATTGGATTCACCCGCCGGCGACGGTGTTACGTCTAATAATCCCAGCACTTGGTCTTCCGGCGATCGATGTTCGACTAGAAAAGTGGTGAAGTCGCAGTGCAAGACGGAGGAGGTCGAGCCCGGGAAATTCGTCAGGAAGTGCGAGAGAACCGAGGAGATTCTCAGAGACTGCATCGGAAGGCCGGTCGAAGTGATACAGTCCAATAGGGAATTTACAGAAGAGGATGTAACGAATGAGGTGGTTAATAATAGGTCATTCTCGTCAGGATCATCAGAATATCAACCATTTAATTTCCCTGGACTTCGCAGCGATATTGAAGCCATTGAACACAGCCTCTTCGGTAGCATGAAGGGGTTCTTTGATGCAGCTGAAGAGATTAGAAATGGTTTCTTTGGCTCTTTCAGAGATCCACCCCTATTCAGCAGAGAGCCTTCGTCCTCCCCATCGATGAGACAAAACGAGCCCGACTCCGGTCACGTTGACCTATCTGGATTGGCCAGGGATGTCTGA

Protein sequence

MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCERTEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIEHSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQNEPDSGHVDLSGLARDV
Homology
BLAST of CmoCh06G005440 vs. ExPASy Swiss-Prot
Match: W5X2N3 (Fra a 1-associated protein OS=Fragaria ananassa OX=3747 GN=AP PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-46
Identity = 104/200 (52.00%), Postives = 134/200 (67.00%), Query Frame = 0

Query: 1   MGGVWRG---ASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRK 60
           MG VW+      G ++  A D       S    GDRCSTRKVV++QCKTEEVEPGKF+RK
Sbjct: 1   MGWVWKDDDEQGGHVNPSAAD------ISPRLDGDRCSTRKVVRTQCKTEEVEPGKFIRK 60

Query: 61  CERTEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIE 120
           CE+TEE+LRDC+GRP+EV+QSN+E+TE+DVT++V+   S S GS++   FNFPGL+ DI+
Sbjct: 61  CEKTEEVLRDCVGRPIEVVQSNKEYTEDDVTDQVMKG-SVSFGSADNGAFNFPGLQHDID 120

Query: 121 AIEHSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSS-PSMRQNEP---------- 180
            IEH+  G +  FF+AAE+++NGFF SF  P +F   PS+S PS R+  P          
Sbjct: 121 EIEHNFLGGLSRFFEAAEDMKNGFFSSFGIPHIFDEGPSTSLPSPRREIPIDSPRQLEAF 180

BLAST of CmoCh06G005440 vs. ExPASy TrEMBL
Match: A0A6J1FHK7 (uncharacterized protein LOC111445845 OS=Cucurbita moschata OX=3662 GN=LOC111445845 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER
Sbjct: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120
           TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE
Sbjct: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120

Query: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQNEPDSGHVDLSGLARDV 180
           HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQNEPDSGHVDLSGLARDV
Sbjct: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQNEPDSGHVDLSGLARDV 180

BLAST of CmoCh06G005440 vs. ExPASy TrEMBL
Match: A0A6J1KVN4 (uncharacterized protein LOC111498606 OS=Cucurbita maxima OX=3661 GN=LOC111498606 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.0e-95
Identity = 177/180 (98.33%), Postives = 179/180 (99.44%), Query Frame = 0

Query: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MGGVWRG SGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER
Sbjct: 1   MGGVWRGVSGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120
           TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE
Sbjct: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120

Query: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQNEPDSGHVDLSGLARDV 180
           HSLFGSMKGFFDAAEEIRNGFFGSFRDPP+F+REPSSSPSMRQNEPDSGHVDLSGLARDV
Sbjct: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPVFNREPSSSPSMRQNEPDSGHVDLSGLARDV 180

BLAST of CmoCh06G005440 vs. ExPASy TrEMBL
Match: A0A1S3B6X7 (uncharacterized protein LOC103486704 OS=Cucumis melo OX=3656 GN=LOC103486704 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 8.1e-65
Identity = 137/195 (70.26%), Postives = 155/195 (79.49%), Query Frame = 0

Query: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MG VW   +G+LDS A DG   +N +  SS DRCSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWIDDTGDLDSSAVDGAKFDNSTYPSSSDRCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120
           TEEILRDCIGRP EVIQSN+EFTEEDVT+++V NRSF  GSSE++PF+FPGLRSDI+AIE
Sbjct: 61  TEEILRDCIGRPTEVIQSNKEFTEEDVTDQMV-NRSFPLGSSEHRPFDFPGLRSDIDAIE 120

Query: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQ---------------NE 180
            SLFGSMKGFF+AAEEI+NGFFGS RDPPLF+R+ SS  SMR+                E
Sbjct: 121 QSLFGSMKGFFEAAEEIKNGFFGSLRDPPLFNRDSSSPGSMRRGIPIEDHDPEFFSNPKE 180

BLAST of CmoCh06G005440 vs. ExPASy TrEMBL
Match: A0A6J1DDK9 (uncharacterized protein LOC111019393 OS=Momordica charantia OX=3673 GN=LOC111019393 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.5e-63
Identity = 141/195 (72.31%), Postives = 152/195 (77.95%), Query Frame = 0

Query: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MG VWR   GE D  AGD       S  SSGDRCSTRKVVKSQC+TEEVEPGKFVRKCER
Sbjct: 1   MGWVWRDEPGESDLLAGD-------SGGSSGDRCSTRKVVKSQCRTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLRSDIEAIE 120
           TEEILRDC+GRPVEVIQSN+EFTEEDV ++VV NRSFSSG+S +QPF FPGLRSDIEAIE
Sbjct: 61  TEEILRDCVGRPVEVIQSNKEFTEEDVIDQVV-NRSFSSGTSVHQPFGFPGLRSDIEAIE 120

Query: 121 HSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQ---------------NE 180
            +LFGSMKGFF+AAEEI+NGFFG  RDP  F  E SSSPSMR+               NE
Sbjct: 121 RNLFGSMKGFFEAAEEIKNGFFGVLRDPHQFIEE-SSSPSMRRGIPIEDHEQRIFSKPNE 180

BLAST of CmoCh06G005440 vs. ExPASy TrEMBL
Match: A0A0A0LGU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782830 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 5.4e-61
Identity = 134/198 (67.68%), Postives = 153/198 (77.27%), Query Frame = 0

Query: 1   MGGVWRGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGKFVRKCER 60
           MG VWR  + + DS A D    NN ++ SS D CSTR VV+S CKTEEVEPGKFVRKCER
Sbjct: 1   MGWVWRDDTDDSDSFAADADKFNNSTSPSSSDWCSTRNVVRSHCKTEEVEPGKFVRKCER 60

Query: 61  TEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGS--SEYQPFNFPGLRSDIEA 120
           TEEILRDCIGRP EVI+SN+E TEEDVT+++V NRSFS GS  SE++P +FPGLRSDI+A
Sbjct: 61  TEEILRDCIGRPTEVIKSNKEITEEDVTDQMV-NRSFSLGSSPSEHRPLDFPGLRSDIDA 120

Query: 121 IEHSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREPSSSPSMRQ--------------- 180
           IE SLFGSMKGFF+AAEEI+NGFFGS RDPPLF+R+ SSS SMR+               
Sbjct: 121 IEQSLFGSMKGFFEAAEEIKNGFFGSLRDPPLFNRDSSSSASMRRGIPIEEDHDPVFFYN 180

BLAST of CmoCh06G005440 vs. TAIR 10
Match: AT2G35900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-36
Identity = 86/200 (43.00%), Postives = 114/200 (57.00%), Query Frame = 0

Query: 1   MGGVW-------RGASGELDSPAGDGVTSNNPSTWSSGDRCSTRKVVKSQCKTEEVEPGK 60
           MG +W       +  +   D P GD          ++ + CST  VV+SQCKTEEVEPGK
Sbjct: 1   MGWIWIDDSSASKAGADLTDKPLGDSA--------AAAENCSTTTVVRSQCKTEEVEPGK 60

Query: 61  FVRKCERTEEILRDCIGRPVEVIQSNREFTEEDVTNEVVNNRSFSSGSSEYQPFNFPGLR 120
           FVRKC++TEEILR C G+P EV+QSN E TEEDVT+++V   +  +   +  P NFPGLR
Sbjct: 61  FVRKCDKTEEILRHCFGKPSEVVQSNTEHTEEDVTDQMVGRSALPNQFEDKNPLNFPGLR 120

Query: 121 SDIEAIEHSLFGSMKGFFDAAEEIRNGFFGSFRDPPLFSREP----SSSPSMRQNEPD-- 180
            D++AIE      MK FFDAAEE+ +  F    D    +R       + P + ++  D  
Sbjct: 121 RDVDAIERHFLSGMKSFFDAAEEMTSSLFDIMGDHHPSTRRGGIPIENHPKVEEHRNDET 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
W5X2N36.2e-4652.00Fra a 1-associated protein OS=Fragaria ananassa OX=3747 GN=AP PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1FHK71.4e-96100.00uncharacterized protein LOC111445845 OS=Cucurbita moschata OX=3662 GN=LOC1114458... [more]
A0A6J1KVN42.0e-9598.33uncharacterized protein LOC111498606 OS=Cucurbita maxima OX=3661 GN=LOC111498606... [more]
A0A1S3B6X78.1e-6570.26uncharacterized protein LOC103486704 OS=Cucumis melo OX=3656 GN=LOC103486704 PE=... [more]
A0A6J1DDK91.5e-6372.31uncharacterized protein LOC111019393 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A0A0LGU75.4e-6167.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G782830 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G35900.14.6e-3643.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..167
NoneNo IPR availablePANTHERPTHR35722MAL D 1-ASSOCIATED PROTEINcoord: 1..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G005440.1CmoCh06G005440.1mRNA