CmoCh06G005380 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ML domain-containing protein
Location	Cmo_Chr06: 2593968 .. 2598445 (+)
RNA-Seq Expression	CmoCh06G005380
Synteny	CmoCh06G005380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCACGACGCAATCAAACTGCTCTTCACTGCAATATAGTTTCTACGAGATTACACAAAGTAAATTCACAGATCAAGGGATAAAGAAAATGGATAGTGTTCATAGCTGCAAGATCCTAGGTCAACGGTTTGCTTGGTTCTTCTCTCCTTGCATTATTTTTTTATAAAATTTCTGTGTATCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCCCGCTCTCCAATGGCGTTCGTCTCATTCAGTTTCTCCCACTCTACTCCACCGAAACCCCCGTTTTTCACGCGACTCCAGAGCTTCATTATTAGAATTTCTCAAGTTTTTCCTCAAATTTGTTCTTACAGAGTTCGAATTCCATGGAGCCCTCTCTTCTGATGAAGCTGATTTTTTCATTTCTTCTTTGGCTAAGCTTTGTTCCACAGTTCTTCGCCACTCGAGTTCATCTCTGCGGTTTGTGGTTTTCTAATTTCAATGCTTTTACTCCATTTCTGAGATTTTTTTCTTTCCATTCTGAATCTTGGTTTTGTGGGTTAGATTAAATAGCTTGTGGCTCTGTTTTTGTGCTTATATTTCAATGTCAATCCACTTATAGTTGAGTAATATTTAATGATGTCAATCCACTTATAGTTGAGTAATATTTAATGATTGAAAGTCAATGTCAATGTACTGTTGAATATGTTTGTTTTTTTCCTCCGGGGTTTCAATCTCTTATTTTAAACATCATTTCGTTTGATCATTTCATTTTTCTATTCGTAGTTGCATTTCTGGTACTGTTAAAGGCACTGTTATATAACCCATCATTATTATAGAGCTTCATTTTGCAACACTTCTAACACCCTTCAATCTTTCACATCTCAACGACAATGATGTGCTTGAAGGGGAATAGTGTTGAATCTGAAGGTGGGCATGTATCAGCCCAAGCTCACCGCTAGCAGATATTGTCTTTTTTGGACATTACGTTTCAGACTTCCCCTCAAGGTTTTTAAAACGCGTCTTCTGTGAGAGGTTTTCACATCCTTATAAAGAATGCTTCATTCTCCTCCTCAACCGATGTGAGATCTCACAATCCACTCACATTGTAAGATCCTACATCCGTTGTAAAGGGCAACGAAGCATGCTTTATTAGGGCGTGGAAATATCTCTCTAACAGATGCGTTTTAAAAAATTTTAAAAACTCAAAAGGAAACTTGAAAGGAAAAACTCACAAAAGACAATATCTAGTAGCAAGTGGGCTTGGATGTTACAAAATATGTGTGATAATTAGATTGTAAATGAGAACTAAATAGCCTATGGAAGTTTACCTTTCTTTTTTAATAAACCAGCTCAGCAAGGTTTTAAATGTTGACGTTGGCCTGAATGTTGAGACCTGAATTTAATGGAAATGTAGATAAAATGATGAACATTTCATGAAAATTCATAAATAGCACTTGCATGGGCGTAAATTCGAACGTCTAATATCTTGATCACCGAGCTAGCTCTAGTTCATTAAGATTTAACCAATCACTACGGGGTCTAAGGAAGTTTGCGTTTTATTCTCTAACTTGAGTGAACTTTGCTCTGATGGAATGGAATTTTGTATTGATAATTTATTTTTGTTCTGCAACTAATGCAGATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTAGGGGTCACCCAACAAATATGACCTTAAATCTAATCATAGGTACATAATACCCCACTTAGCCCTTTTCATCATCTTTATAGTTTTCTTAACATTCCATTTTTTTGACAAGTAGAAGCTGAAACTTAACTATGAATACCTCTTTTAAGGATTTGATGCAAATTTGCTCATGTTTATGTTAAACTTTTATTTAGCTGTTACTAGTTGCTCCATTGGTAAATTTAGTGGGCGCTTAACGTCAATAAAACAGGCACTGAACTGTTTTTCCTAGTAACAGGGCTGACATCTGCTACCTACTACCTTCCTTTCTTCTATGAACAATAATGAGTTCATGGGTTAGATTAACCTTTAGATTTGTCATCTTTTTTATGGATAAGCAAGATTAGAGGATACTTCTCTATCGCTTCTGTTTTACTTCTAACTAGCACCAACTGCCCTGTCTTTATTTGACCCTTGAGAGAGAAGGTATACCCCTTCCCCCTCGTGTAATTCTTGTTAGGTGTGAGATCCCACGTCTATTGGGGAGGAGAACGAATCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCATACGCGTTTTAAAAACCTTGAGGGAAAGTCCAAAGAGAACATTATCTGCTAGCGGTGGGCTTGGGCAGTTACATTAGGCATATGTCATTCTTTGAACCTTAGCTCGAACTTTGGCTAATGACAGCAATCTTGTACACGTGGCATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTTATATTTCGGATGGCACGTATATAGTGACAGCTATGACATTTGTGTTGAGACGTCCTGCCCTTATACGTCTGGTGATTTTGCACTTGCCCCATTTCAAACGCCTCTGGCATTCTTTGTACCTGTAAGTTACTCAATTCATGTTTACCACTTGTGCTTATCTTTTATTAAGTTAAAGGAACAAGGTTTTATCCTGGCTCAATTGATCTACAAAGTCTGTTCTTTTTGTCTTGAAAGGATTAAAAGCATCGCTCTACCTTATGGAAGGGTTTTCTTAGTTTCATGTGTTCTCTTAATATTAAGTATTCCACTAGAACCTAATGGGAGTTCGAGTTAGCACAAATCTAATTATTGAAAACTAGAACCTTATCTAAAGAGCTTCATGGTGACCTTACGTGAGATCCTATATTGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGATGTGGAAACCTCTCCATAGCATACACGTTTTAAAAACCTTGAGGGGAAGCTCGGAAGGGAAAGTTCAAAGAGGACAATATCTACTAACCGTGGGCTTGGACGGTTACAAATAGTATCAGGGCCAAGTTTTGGGCAGTGTGTTAGTGAGGACGCTGGGTTCCCAAAGGGGTGGATTATGAGATCCCACCTTGGTTGGAGATGAGAATGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGCAGATGCATTTTAAAACCTTGAGGGGAAGCCCGAGAGGGAAAGCCCAAAGAGAACAATATCCGTTAGCGGTGGGCTTGGGTTGTTACAAACTAGGTTTTTTGGGATGAAAAACCTGAGATATACACACACAATCATTGAATTCTTTTTCCTTTAACTATTATGCATTCTAACTATTTCCTTCTCCTTGCAGGGTTCATATCATATGCAGATAACCATTATTGATGGACATGACAATAAACTAACATGTTTTGGCTTTGATTATGAACTGGTGATTGCATCACTATTCGGACATAGCTAAGAGCTTTTATTTATTGAATACTCAGCTATTGATGTTTGTACATATAAACCCTTGTAAAGCTCTGTCATCTTTAGATCCTTGTTCGTTCCTTGGGCAGACAACATTTGCACTATGACCATTTGAACAACTTATTCAGGAGAATTGAGTTGTGAAAATTGCCAAAAAAAACTCGAGTTATTAGAGAGTACCATACTACATATCGTCATTCTCACGTGGATTACTTTGGTTTTCATCGATACAAAATGGAAAGAGAAACAATTAAGTTCTAAAATAAGTTGTACTATCTGAGTAAAGGTTCAAGTTTTTTCTTTATGCTTGCTTTAATATATGATCATCATTAATGTATACATGTTTCTTCAAATAGTATATTTGAATCATTGTACTTCATATTGATGCATTATTTATATTTTTTTCATTGGGCTGAAGATTGTAGGACTCTTGTTAGATCAAGAACCACGAAAGTACGGTAGAGAATGCATCTCCATTGGTATGAGGTCTAACCAAAAGCAAAGCTATGAGAGCTTATGCTCAAAGTGGACAATATTATACCATTATGGAGAGTCGTGATTCCTAACAGAAAGTACTGTAGGATAGATGTAGCTAATTCGGTAATCCACCAAGGTTTATGAACAGCATGAGCATGCATCGTGCCTCGACAAACCACGAAGCTTGTCGAAATGGCCACGAAGGTTCCTTTCTCATATACCGAATCATGATGGGGTGGGTGGTTTAGCCTCTGCCATTGACCCTCTTCACTTTGCTGCTTTTCTCATGAGCATACACCAAATAGGTGGGGTCAGGTTCTTTCTTCTTCTTCATCATGCATCTTTTTCTTTTTTCTTGTTTCATTATTGTGTCATAACATGATTGATGGACCATTGTTGGTGATGGGTCAGAATATGAGTTACAAATAGTTGCCTCACTAAACAATGGCAAACCAAGCCCCACTCTGCTAAAGTCATTAATTTATGCACCTCTCTGAAAGCAAACTAACAAACACCTTTTTTTTTGCCTTTCTTTCAGCCTCCACTTTCTAGCTATATTGGAATCCAGAACTGA

mRNA sequence

ATGAAAGCACGACGCAATCAAACTGCTCTTCACTGCAATATAGTTTCTACGAGATTACACAAACTGCAAGATCCTAGGTCAACGGTTTGCTTGGTTCTTCTCTCCTTGCATTATTTTTTTATAAAATTTCTGTGTATCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCCCGCTCTCCAATGGCGTTCGTCTCATTCAGTTTCTCCCACTCTACTCCACCGAAACCCCCGTTTTTCACGCGACTCCAGAGCTTCATTATTAGAATTTCTCAAAGTTCGAATTCCATGGAGCCCTCTCTTCTGATGAAGCTGATTTTTTCATTTCTTCTTTGGCTAAGCTTTGTTCCACAGTTCTTCGCCACTCGAGTTCATCTCTGCGATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTAGGGGTCACCCAACAAATATGACCTTAAATCTAATCATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTTATATTTCGGATGGCACGTATATAGTGACAGCTATGACATTTGTGTTGAGACGTCCTGCCCTTATACGTCTGGTGATTTTGCACTTGCCCCATTTCAAACGCCTCTGGCATTCTTTGTACCTGGTTCATATCATATGCAGATAACCATTATTGATGGACATGACAATAAACTAACATGTTTTGGCTTTGATTATGAACTGCCTCCACTTTCTAGCTATATTGGAATCCAGAACTGA

Coding sequence (CDS)

ATGAAAGCACGACGCAATCAAACTGCTCTTCACTGCAATATAGTTTCTACGAGATTACACAAACTGCAAGATCCTAGGTCAACGGTTTGCTTGGTTCTTCTCTCCTTGCATTATTTTTTTATAAAATTTCTGTGTATCCCATCTGCTAAACCCCGACGAAGAAGGGATTCTTCCCGCTCTCCAATGGCGTTCGTCTCATTCAGTTTCTCCCACTCTACTCCACCGAAACCCCCGTTTTTCACGCGACTCCAGAGCTTCATTATTAGAATTTCTCAAAGTTCGAATTCCATGGAGCCCTCTCTTCTGATGAAGCTGATTTTTTCATTTCTTCTTTGGCTAAGCTTTGTTCCACAGTTCTTCGCCACTCGAGTTCATCTCTGCGATGAGACAGCTAAGTATGATATCATGGTGAAAGGAGTAGAGATATCTCCCAGCCCCATAGTTAGGGGTCACCCAACAAATATGACCTTAAATCTAATCATAGGTAAGCCAATCATTGCAGGAAAAATGGTAGTTGATATTTTATATTTCGGATGGCACGTATATAGTGACAGCTATGACATTTGTGTTGAGACGTCCTGCCCTTATACGTCTGGTGATTTTGCACTTGCCCCATTTCAAACGCCTCTGGCATTCTTTGTACCTGGTTCATATCATATGCAGATAACCATTATTGATGGACATGACAATAAACTAACATGTTTTGGCTTTGATTATGAACTGCCTCCACTTTCTAGCTATATTGGAATCCAGAACTGA

Protein sequence

MKARRNQTALHCNIVSTRLHKLQDPRSTVCLVLLSLHYFFIKFLCIPSAKPRRRRDSSRSPMAFVSFSFSHSTPPKPPFFTRLQSFIIRISQSSNSMEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHDNKLTCFGFDYELPPLSSYIGIQN

Homology

[Close]

BLAST of CmoCh06G005380 vs. ExPASy Swiss-Prot
Match: Q9AST8 (MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=ROSY1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.5e-05
Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 104 KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGK 163
           +L+   L+ L F P     +   CD   +Y + V  VEISP P+ R     +T+  +  K
Sbjct: 7   QLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNK 66

Query: 164 PIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFAL 204
            I  G  V   L  G + V + SY +C  T+CP   G   L
Sbjct: 67  EISDGVTVNLKLAVGMFPVSTKSYSLCDITACPVAPGPIVL 107

[Close]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL
Match: A0A6J1FIH7 (uncharacterized protein LOC111445883 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445883 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.2e-79
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 97  MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMT 156
           MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMT
Sbjct: 1   MEPSLLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMT 60

Query: 157 LNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPG 216
           LNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPG
Sbjct: 61  LNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPG 120

Query: 217 SYHMQITIIDGHDNKLTCFGFDYEL 242
           SYHMQITIIDGHDNKLTCFGFDYEL
Sbjct: 121 SYHMQITIIDGHDNKLTCFGFDYEL 145

[Close]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL
Match: A0A6J1KWB4 (uncharacterized protein LOC111498769 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498769 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.4e-77
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 97  MEPS-LLMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM 156
           MEPS LLMKLIFSFLLWLSFVP FF TRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM
Sbjct: 1   MEPSPLLMKLIFSFLLWLSFVPHFFVTRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM 60

Query: 157 TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP 216
           TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP
Sbjct: 61  TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP 120

Query: 217 GSYHMQITIIDGHDNKLTCFGFDYEL 242
           GSYHMQITIIDGHDNKLTCFGFDYEL
Sbjct: 121 GSYHMQITIIDGHDNKLTCFGFDYEL 146

[Close]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL
Match: A0A5D3DP69 (Putative phosphatidylglycerol/phosphatidylinositol transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004740 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66
Identity = 123/146 (84.25%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 97  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM 156
           MEP+  MKLIF FLLWL F PQF FATRV LCDETA+YDI VKGVEISPSPIVRGHPTNM
Sbjct: 1   MEPTFQMKLIFPFLLWLCFFPQFSFATRVQLCDETAEYDITVKGVEISPSPIVRGHPTNM 60

Query: 157 TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP 216
           T NL+IG PIIAGKMVVDI YFGWH+YSDS+DICVETSCPY SGDFAL P +TPLAFF+P
Sbjct: 61  TFNLLIGNPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYLSGDFALPPLRTPLAFFLP 120

Query: 217 GSYHMQITIIDGHDNKLTCFGFDYEL 242
           GSYHMQITI+DG DNKLTCFGFDYEL
Sbjct: 121 GSYHMQITIVDGDDNKLTCFGFDYEL 146

[Close]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL
Match: A0A1S3B7M8 (uncharacterized protein LOC103486693 OS=Cucumis melo OX=3656 GN=LOC103486693 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66
Identity = 123/146 (84.25%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 97  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM 156
           MEP+  MKLIF FLLWL F PQF FATRV LCDETA+YDI VKGVEISPSPIVRGHPTNM
Sbjct: 1   MEPTFQMKLIFPFLLWLCFFPQFSFATRVQLCDETAEYDITVKGVEISPSPIVRGHPTNM 60

Query: 157 TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP 216
           T NL+IG PIIAGKMVVDI YFGWH+YSDS+DICVETSCPY SGDFAL P +TPLAFF+P
Sbjct: 61  TFNLLIGNPIIAGKMVVDISYFGWHIYSDSHDICVETSCPYLSGDFALPPLRTPLAFFLP 120

Query: 217 GSYHMQITIIDGHDNKLTCFGFDYEL 242
           GSYHMQITI+DG DNKLTCFGFDYEL
Sbjct: 121 GSYHMQITIVDGDDNKLTCFGFDYEL 146

[Close]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL
Match: A0A6J1J1A9 (uncharacterized protein LOC111481784 OS=Cucurbita maxima OX=3661 GN=LOC111481784 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 121/146 (82.88%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 97  MEPSLLMKLIFSFLLWLSFVPQF-FATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNM 156
           MEP+  MKLIF+ LLWL FV QF FATRV LCDETAKYDIMVKGV+ISPSPIVRG P  M
Sbjct: 1   MEPTSPMKLIFTLLLWLCFVLQFSFATRVQLCDETAKYDIMVKGVQISPSPIVRGRPITM 60

Query: 157 TLNLIIGKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVP 216
           T NLIIGKPIIAGKMVVDI YFGWH+Y DS+DICVETSCPY+ GDFALAP QTPLAFF+P
Sbjct: 61  TFNLIIGKPIIAGKMVVDISYFGWHMYRDSHDICVETSCPYSFGDFALAPLQTPLAFFLP 120

Query: 217 GSYHMQITIIDGHDNKLTCFGFDYEL 242
           GSYHMQITI+DG DNKL CFGFDYEL
Sbjct: 121 GSYHMQITIVDGDDNKLACFGFDYEL 146

[Close]

BLAST of CmoCh06G005380 vs. TAIR 10
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-28
Identity = 57/140 (40.71%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 102 LMKLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLII 161
           ++ L   FLL L  V    A  VH C+E A+Y++ VK V+ISP+PI  G P   T++   
Sbjct: 7   ILPLAAVFLLLL--VSPIVAIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANT 66

Query: 162 GKPIIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPGSYHMQ 221
           G+ I  GK+V+++ YFGWHV+S+++D+C ETSCP  +GDF +A  Q    +  PGSY ++
Sbjct: 67  GREISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLK 126

Query: 222 ITIIDGHDNKLTCFGFDYEL 242
           + ++D    +LTC  F +++
Sbjct: 127 MKMLDAKKKELTCIKFSFDI 144

[Close]

BLAST of CmoCh06G005380 vs. TAIR 10
Match: AT3G11780.1 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 53/137 (38.69%), Postives = 86/137 (62.77%), Query Frame = 0


Query: 105 LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKP 164
           L  S+ L +S +    AT VH CD   +Y++ V+GV+I+P PI RG P    ++      
Sbjct: 10  LAISYFLLVSTI--VAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTE 69

Query: 165 IIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPGSYHMQITI 224
           I +GK+V+++ YFGWH++S+++D+C ETSCP   GDF +A  Q    +  PGSY +++ +
Sbjct: 70  ISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKM 129

Query: 225 IDGHDNKLTCFGFDYEL 242
           +DG   +LTC  F +++
Sbjct: 130 LDGRKKELTCIKFSFDI 144

[Close]

BLAST of CmoCh06G005380 vs. TAIR 10
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-25
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 105 LIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKP 164
           L  S+ L +S +    AT VH CD   +Y++ V+GV+I+P PI RG P    ++      
Sbjct: 10  LAISYFLLVSTI--VAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTE 69

Query: 165 IIAGKMVVDILYFGWHVYSDSYDICVETSCPYTSGDFALA-----PFQTP---------- 224
           I +GK+V+++ YFGWH++S+++D+C ETSCP   GDF +A     P  TP          
Sbjct: 70  ISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVS 129

Query: 225 ---LAFFVPGSYHMQITIIDGHDNKLTCFGFDYEL 242
                F V GSY +++ ++DG   +LTC  F +++
Sbjct: 130 IAYYEFHVEGSYSLKMKMLDGRKKELTCIKFSFDI 162

[Close]

BLAST of CmoCh06G005380 vs. TAIR 10
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein )

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-19
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 110 LLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGKPIIAGK 169
           LL + F+P   AT    CD+     + V GV+ISP P+V G      +    G+ I  GK
Sbjct: 13  LLSVFFLPALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGK 72

Query: 170 MVVDILYFGWHVYSDSYDICVETSCPYTSGDFALAPFQTPLAFFVPGSYHMQITIIDGHD 229
           +V+ +LY G  V+++++D+C ET+CP   G F L+  QT  +   PG+Y +++TI D + 
Sbjct: 73  VVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNG 132

Query: 230 NKLTCFGFDYEL 242
            +LTC  F +++
Sbjct: 133 GRLTCISFKFKI 143

[Close]

BLAST of CmoCh06G005380 vs. TAIR 10
Match: AT2G16005.1 (MD-2-related lipid recognition domain-containing protein )

HSP 1 Score: 49.3 bits (116), Expect = 5.3e-06
Identity = 32/101 (31.68%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 104 KLIFSFLLWLSFVPQFFATRVHLCDETAKYDIMVKGVEISPSPIVRGHPTNMTLNLIIGK 163
           +L+   L+ L F P     +   CD   +Y + V  VEISP P+ R     +T+  +  K
Sbjct: 7   QLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTNK 66

Query: 164 PIIAGKMVVDILYFG-WHVYSDSYDICVETSCPYTSGDFAL 204
            I  G  V   L  G + V + SY +C  T+CP   G   L
Sbjct: 67  EISDGVTVNLKLAVGMFPVSTKSYSLCDITACPVAPGPIVL 107

The following BLAST results are available for this feature:

BLAST of CmoCh06G005380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST8	7.5e-05	31.68	MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmoCh06G005380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIH7	1.2e-79	100.00	uncharacterized protein LOC111445883 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KWB4	3.4e-77	97.95	uncharacterized protein LOC111498769 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3DP69	2.7e-66	84.25	Putative phosphatidylglycerol/phosphatidylinositol transfer protein OS=Cucumis m...	[more]
A0A1S3B7M8	2.7e-66	84.25	uncharacterized protein LOC103486693 OS=Cucumis melo OX=3656 GN=LOC103486693 PE=...	[more]
A0A6J1J1A9	2.1e-63	82.88	uncharacterized protein LOC111481784 OS=Cucurbita maxima OX=3661 GN=LOC111481784...	[more]

BLAST of CmoCh06G005380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06480.1	1.3e-28	40.71	Immunoglobulin E-set superfamily protein	[more]
AT3G11780.1	1.4e-27	38.69	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT3G11780.2	3.0e-25	36.13	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT3G44100.1	2.4e-19	35.61	MD-2-related lipid recognition domain-containing protein	[more]
AT2G16005.1	5.3e-06	31.68	MD-2-related lipid recognition domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 124..239 e-value: 6.2E-16 score: 68.9
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 123..240 e-value: 1.4E-13 score: 51.4
None	No IPR available	GENE3D	2.60.40.770		coord: 123..242 e-value: 6.0E-7 score: 31.9
None	No IPR available	PANTHER	PTHR11306:SF0	OS07G0159800 PROTEIN	coord: 96..239
IPR039670	Sterol transport protein NPC2-like	PANTHER	PTHR11306	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	coord: 96..239
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 122..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005380.1	CmoCh06G005380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding