CmoCh06G005310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Syntaxin of plants 121
Location	Cmo_Chr06: 2570120 .. 2571344 (-)
RNA-Seq Expression	CmoCh06G005310
Synteny	CmoCh06G005310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCGATGTCGTCGAGTTTTTCGCCTTGTTCGTGTACCAAGACCGCCATGTCCATGAAAACCTGGTGCAGCTCCTTCAGATTCCTTTCCAGGTCTTTCACTGCATCATGCCTCTCCTGGATCTCGCTAATGGTGTCTAAGATTCTGCCTCTTCCTTGTTCTTGAATGGCTTTCTGCAAGAATGTCTCGCTTTCCCCTGCATAGTTGGAGATATCTCATTATTATTCAATTCTCAACTATCTTCTTCTCGAATAAAGTACACTATAGAACCTCTCCTGAGGTCTATGTAGCCCTCGAACAGCCTCTTCTTAATCGAGGCTCGACTCCTTTCTCAAGAGCCCTCGAATAAAGTACACCCTCTATTCGTCACATGGGTCACTTTTGACTACACCTTCAACACTAGCAATTTCTTTGTTGATTCTATTGACATGGCTAAATTAAGGACATGACTCTGTTATCGTATTAGGAATCACGGACTTACAGAATGGTATGATATTGTCCACTTTGAGCCTAAGCTCTCGTGGTTTTACCCAAAAGGCCTCGTACCGAGATGTATTCCTTACTTATAAACCCACGATCATTCCCTAAATTAGCCAACGTGAGACTCCCTCTCAACAATTTTCAACCCACGAGCCAAAATTGATAAGCAAAGAACATGATAGAGTGAATTTGAGTTATCTCACCTGTAGATATCAAGATATCAATGGTTTTCTCATCCGGATTTTCACCAGTAACAGTGAAATACCTCCGCTGCACGGTCTCCCTGTACTCAGAAGAGATTTGTTGCCTCAAATTATTGAACCCCTCCATCGAATCCTGCAATTTCTTCCTCAACCCACTGAGCACAGAAGTCCGAGTCCGGTCAGAGGACGATCCAGGGCCGCAGCCAGGTTGGGTCCGATTGGAGGCATTGGAGCGATCAAGCGCCTCCAATCGGACCTTAATGAGCTTAGCCTTCTTGAGAGCAAGGGAAACATCCGAATCCATGCGAGATCGGAGGTCCTTAACAGCCTTAGCATTGTGAAGCGTCTTACTCTGTTCATGGGAGTCGTAGAGGTTCTGGTAGAGTTTCTCAAGCTCCTTGAGTTCGTCTTTCACAGATTCAACGTCTTCAAAGAACTTGTCGAGATTAGCAGCCGTAGGGGAAGAGGAGGAGATACCCATCTCAACGACATGGCTGTCGCGAGAGAAAGAGCGAGAGGAGAACAAATCGTTCATTGA

mRNA sequence

ATGGCTCTCGATGTCGTCGAGTTTTTCGCCTTTAACAGTGAAATACCTCCGCTGCACGGTCTCCCTGTACTCAGAAGAGATTTGTTGCCTCAAATTATTGAACCCCTCCATCGAATCCTGCAATTTCTTCCTCAACCCACTGAGCACAGAAGTCCGAGTCCGGTCAGAGGACGATCCAGGGCCGCAGCCAGGTTGGGTCCGATTGGAGGCATTGGAGCGATCAAGCGCCTCCAATCGGACCTTAATGAGCTTAGCCTTCTTGAGAGCAAGGGAAACATCCGAATCCATGCGAGATCGGAGGTCCTTAACAGCCTTAGCATTGTGAAGCGTCTTACTCTGTTCATGGGAGTCGTAGAGGTTCTGGTAGAGTTTCTCAAGCTCCTTGAGTTCGTCTTTCACAGATTCAACGTCTTCAAAGAACTTGTCGAGATTAGCAGCCGTAGGGGAAGAGGAGGAGATACCCATCTCAACGACATGGCTGTCGCGAGAGAAAGAGCGAGAGGAGAACAAATCGTTCATTGA

Coding sequence (CDS)

ATGGCTCTCGATGTCGTCGAGTTTTTCGCCTTTAACAGTGAAATACCTCCGCTGCACGGTCTCCCTGTACTCAGAAGAGATTTGTTGCCTCAAATTATTGAACCCCTCCATCGAATCCTGCAATTTCTTCCTCAACCCACTGAGCACAGAAGTCCGAGTCCGGTCAGAGGACGATCCAGGGCCGCAGCCAGGTTGGGTCCGATTGGAGGCATTGGAGCGATCAAGCGCCTCCAATCGGACCTTAATGAGCTTAGCCTTCTTGAGAGCAAGGGAAACATCCGAATCCATGCGAGATCGGAGGTCCTTAACAGCCTTAGCATTGTGAAGCGTCTTACTCTGTTCATGGGAGTCGTAGAGGTTCTGGTAGAGTTTCTCAAGCTCCTTGAGTTCGTCTTTCACAGATTCAACGTCTTCAAAGAACTTGTCGAGATTAGCAGCCGTAGGGGAAGAGGAGGAGATACCCATCTCAACGACATGGCTGTCGCGAGAGAAAGAGCGAGAGGAGAACAAATCGTTCATTGA

Protein sequence

MALDVVEFFAFNSEIPPLHGLPVLRRDLLPQIIEPLHRILQFLPQPTEHRSPSPVRGRSRAAARLGPIGGIGAIKRLQSDLNELSLLESKGNIRIHARSEVLNSLSIVKRLTLFMGVVEVLVEFLKLLEFVFHRFNVFKELVEISSRRGRGGDTHLNDMAVARERARGEQIVH

Homology

[Close]

BLAST of CmoCh06G005310 vs. ExPASy TrEMBL
Match: A0A151T4X0 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_016596 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 59/161 (36.65%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 5   VVEFFAFNSEIPPLHGLPVLRRDLLPQIIEPLHRILQFLPQPTEHRSPSPVRGRSRAAAR 64
           V+   A + E+  LHGLPVL R  +  ++E LH +L+ L Q  +     PV G + +AAR
Sbjct: 153 VIRILAGDGEVASLHGLPVLGRHKVANLVEGLHGVLELLLQAVDDGGAGPVGGGTGSAAR 212

Query: 65  LGPIGGIGAIKRLQSDLNELSLLESKGNIRIHARSEVLNSLSIVKRLTLFMGVVEVLVEF 124
              +GG+GA++ L+ +L+EL LLE + N+ +HAR+EVL+ L +V+RL L +  +E   + 
Sbjct: 213 QVAVGGVGAVEGLELELDELGLLEGERNVGVHARAEVLDGLGVVQRLALLVAALEAPRQL 272

Query: 125 LKLLEFVFHRFNVFKELVEISSRRGRGGDTHLNDMAVARER 166
           L+LL+ + H  +V +ELV++          HL+ + V   R
Sbjct: 273 LQLLQLLLHALHVLEELVQVHLPAAPPDARHLHHVLVVLRR 313

[Close]

BLAST of CmoCh06G005310 vs. ExPASy TrEMBL
Match: A5AM92 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023038 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-17
Identity = 55/142 (38.73%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 6   VEFFAFNSEIPPLHGLPVLRRDLLPQIIEPLHRILQFLPQPTEHRSPSPVRGRSRAAARL 65
           V  FA + E+  L G  +L  DL+    E +H + + L +  +      V GR+ AA+  
Sbjct: 192 VGIFAGDGEVAALDGFAILGGDLVADGGEGVHGVPELLAKTVDDGCAGAVGGRTGAASGE 251

Query: 66  GPIGGIGAIKRLQSDLNELSLLESKGNIRIHARSEVLNSLSIVKRLTLFMGVVEVLVEFL 125
             +GG+GAI+  +++L+EL LLES+G++R+H RSE+L+ + +V+ L L + VVE+L++ L
Sbjct: 252 TAVGGVGAIEGFEAELDELGLLESEGDVRVHPRSELLDGVGVVESLALLVSVVELLLQGL 311

Query: 126 KLLEFVFHRFNVFKELVEISSR 148
            L EF+   F++F+ELVEI +R
Sbjct: 312 HLSEFLLDGFDIFEELVEIDTR 333

[Close]

BLAST of CmoCh06G005310 vs. ExPASy TrEMBL
Match: A0A5H2XJP6 (Syntaxin of plants 121 OS=Prunus dulcis OX=3755 GN=Prudu_102S000800 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-14
Identity = 46/99 (46.46%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 52  PSPVRGRSRAAARLGPIGGIGAIKRLQSDLNELSLLESKGNIRIHARSEVLNSLSIVKRL 111
           P P+ GR+ +AA    +GG+GA++ L++DL +L LLE +G++ +HARSEVL+SL +V+RL
Sbjct: 257 PGPIGGRTWSAAGQALVGGVGAVESLEADLEDLGLLEDEGDVGVHARSEVLDSLGVVERL 316

Query: 112 TLFMGVVEVLVEFLKLLEFVFHRFNVFKELVEISSRRGR 151
            + +  +EVLVE L+LLE V H  +V +ELV + +   R
Sbjct: 317 AVLVRGLEVLVEALQLLELVLHGLHVAEELVVVDAAGAR 355

The following BLAST results are available for this feature:

BLAST of CmoCh06G005310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G005310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151T4X0	4.5e-20	36.65	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_016596 PE=4 S...	[more]
A5AM92	2.7e-17	38.73	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023038 PE=4 SV=1	[more]
A0A5H2XJP6	4.8e-14	46.46	Syntaxin of plants 121 OS=Prunus dulcis OX=3755 GN=Prudu_102S000800 PE=4 SV=1	[more]

BLAST of CmoCh06G005310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005310.1	CmoCh06G005310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds