CmoCh06G005170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
Location	Cmo_Chr06: 2496792 .. 2497460 (+)
RNA-Seq Expression	CmoCh06G005170
Synteny	CmoCh06G005170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAAACAACCCCAGTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCCCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAGCCCCCCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTGACAGAGTTCAACGCCGAGAAACTCGCCGGCGTGTTCAACATCGACGTCAAGTTCCGTCCTCGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAAACAACTCGCTGCGATTTCGATTTCTGA

mRNA sequence

ATGGCTGACAAACAACCCCAGTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCCCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAGCCCCCCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTGACAGAGTTCAACGCCGAGAAACTCGCCGGCGTGTTCAACATCGACGTCAAGTTCCGTCCTCGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAAACAACTCGCTGCGATTTCGATTTCTGA

Coding sequence (CDS)

ATGGCTGACAAACAACCCCAGTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCCCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAGCCCCCCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTGACAGAGTTCAACGCCGAGAAACTCGCCGGCGTGTTCAACATCGACGTCAAGTTCCGTCCTCGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAAACAACTCGCTGCGATTTCGATTTCTGA

Protein sequence

MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF

Homology

[Close]

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 9.6e-65
Identity = 125/229 (54.59%), Postives = 167/229 (72.93%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPT-KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLIL 60
           MA +QP LNGAFYGPSVPPP  K Y+R GHGRGC CCLLS  +K+II ++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLRFDVTSAQLTQFNFTG--NQLHYNLALNLTIRNPNKRIGVYYDAIEASPFY 120
           WL+ RP  ++F VT A LT+F+ T   N L YNLAL + +RNPNKRIG+YYD IEA  +Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRP 180
           + +R +T  L PFYQGHK TTV+ P F GQ LV+  A +    NAE+++GV+NI++KFR 
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKLGAVRIGKLKPKVNC-ELKVPLESS---ATSFTFFQTTRCDFDF 223
           R+R KLG ++  ++KPKV+C +L++PL +S    T+ T F   +CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVF-PIKCDFDF 227

[Close]

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-57
Identity = 114/228 (50.00%), Postives = 147/228 (64.47%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGHGRG-----------CACCLLSTIIKLIIGIVVVVGIAV 67
           LNGA+YGPS+PPP K  H HG   G           C CC+LS I  ++I I V++GIA 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASP 127
           LI+WL+FRPN ++F VT A+LT+F     N L YNL LN TIRNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVK 187
           +Y DQR   +  +  FYQGHK TTVV  +  GQQLVLL   E  + N +  + ++ ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 FRPRLRLKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
            R ++R K G ++  + KPK+ C+LKVPL S++TS   FQ T+CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.5e-54
Identity = 110/238 (46.22%), Postives = 151/238 (63.45%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTK---TYHRHGHG-----------RGCACCLLSTIIKLII 60
           M  KQP LNGA+YGPS+PPP K   +Y+  G G           R C CC+LS I  ++I
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  GIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIG 120
            + V++G+A LILWL+FRPN ++F V  A L +F+F   N LHY+L LN TIRNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDAIEASPFYKDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKL 180
           VYYD    S +Y DQR  +  +  FYQGHK TTV+  +  GQ LV+LG    T+   ++ 
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC-ELKVPLESSATSFTF-FQTTRCDFD 222
           +G++ I+ K R  +R K   ++  KLKPK+ C +LK+PL SS ++  F FQ  +CDFD
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCDFD 238

[Close]

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot
Match: Q9C615 (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-24
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 0


Query: 64  RPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQRL 123
           R N ++F V  A+LT F+  + N L Y+L+LNL+IRN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLK 183
               +P FY G K T ++   F GQ LVLL   E  +F  ++  GV+ IDVK     R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 LGAVRIGKLKPKVNCELKVPLESSATSFT 212
           +  +    +KP V C LK+PL   +++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

[Close]

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot
Match: Q9SRN0 (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.3e-16
Identity = 54/180 (30.00%), Postives = 92/180 (51.11%), Query Frame = 0


Query: 22  KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFN 81
           K    HGH R     L+  I   II ++ ++ + +L++W + +P+K RF +  A +  FN
Sbjct: 2   KDCENHGHSRR---KLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFN 61

Query: 82  FTGNQ---LHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQRLN-TQWLPPFYQGHKTT 141
            +GN    L  N  + L+ RNPN +IG+YYD ++    Y+ Q++     +PP YQGHK  
Sbjct: 62  VSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDV 121

Query: 142 TVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC 198
            + +P   G  + +     ++  + +K  GV  + ++   R+R K+G    GK    V C
Sbjct: 122 DIWSPFVYGTSVPIAPFNGVS-LDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 177

[Close]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL
Match: A0A6J1FQR2 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111447589 PE=4 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 9.5e-124
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120
           LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
           LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF
Sbjct: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 222

[Close]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL
Match: A0A6J1GBL6 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111452658 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.4e-121
Identity = 218/222 (98.20%), Postives = 218/222 (98.20%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQP LNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120
           LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEAS FYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVV PQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
           LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQ TRCDFDF
Sbjct: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQATRCDFDF 222

[Close]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL
Match: A0A6J1L3J2 (NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498796 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.1e-119
Identity = 215/222 (96.85%), Postives = 217/222 (97.75%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQP LNGAFYGPSVPPPTKTYHR GHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPHLNGAFYGPSVPPPTKTYHRPGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120
           LVFRPNKLRFDVTSA+LTQFNFTGNQL YNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAELTQFNFTGNQLRYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVV PQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
           LKLGAVRIGKLKPKV+CELKVPLESSATSFTFFQ TRCDFDF
Sbjct: 181 LKLGAVRIGKLKPKVHCELKVPLESSATSFTFFQATRCDFDF 222

[Close]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL
Match: A0A5A7TKU8 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004500 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 177/222 (79.73%), Postives = 197/222 (88.74%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQP LNGAFYGP+VPPP KTYHRHGH RGCACCLL+T +KL+I IVVVVGIAVL+LW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHRRGCACCLLTTFLKLLITIVVVVGIAVLVLW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120
           LVFRP+KL F VT A+LT+FN +GNQLHYN+ALNLT+RNPN RIGVYYD IEASPFYKDQ
Sbjct: 61  LVFRPHKLTFHVTDAELTRFNISGNQLHYNMALNLTVRNPNNRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQ HKTTTV+ P FNGQQ+V L   +LTEFN E LAGVFN+D+ FR +LR
Sbjct: 121 RLNTQWLPPFYQDHKTTTVLRPHFNGQQIVFLAGDKLTEFNGETLAGVFNVDLTFRLQLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
           LK+GAVRIGK KPKVNCELKVPL+S+  SFTFFQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTFFQTTRCDFDF 222

[Close]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL
Match: A0A1S3B6C1 (protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103486672 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 177/222 (79.73%), Postives = 197/222 (88.74%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQP LNGAFYGP+VPPP KTYHRHGH RGCACCLL+T +KL+I IVVVVGIAVL+LW
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHRRGCACCLLTTFLKLLITIVVVVGIAVLVLW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120
           LVFRP+KL F VT A+LT+FN +GNQLHYN+ALNLT+RNPN RIGVYYD IEASPFYKDQ
Sbjct: 61  LVFRPHKLTFHVTDAELTRFNISGNQLHYNMALNLTVRNPNNRIGVYYDVIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQ HKTTTV+ P FNGQQ+V L   +LTEFN E LAGVFN+D+ FR +LR
Sbjct: 121 RLNTQWLPPFYQDHKTTTVLRPHFNGQQIVFLAGDKLTEFNGETLAGVFNVDLTFRLQLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
           LK+GAVRIGK KPKVNCELKVPL+S+  SFTFFQTTRCDFDF
Sbjct: 181 LKVGAVRIGKFKPKVNCELKVPLKSNPNSFTFFQTTRCDFDF 222

[Close]

BLAST of CmoCh06G005170 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 248.1 bits (632), Expect = 6.8e-66
Identity = 125/229 (54.59%), Postives = 167/229 (72.93%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPT-KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLIL 60
           MA +QP LNGAFYGPSVPPP  K Y+R GHGRGC CCLLS  +K+II ++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLRFDVTSAQLTQFNFTG--NQLHYNLALNLTIRNPNKRIGVYYDAIEASPFY 120
           WL+ RP  ++F VT A LT+F+ T   N L YNLAL + +RNPNKRIG+YYD IEA  +Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRP 180
           + +R +T  L PFYQGHK TTV+ P F GQ LV+  A +    NAE+++GV+NI++KFR 
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKLGAVRIGKLKPKVNC-ELKVPLESS---ATSFTFFQTTRCDFDF 223
           R+R KLG ++  ++KPKV+C +L++PL +S    T+ T F   +CDFDF
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSNGTTTTSTVF-PIKCDFDF 227

[Close]

BLAST of CmoCh06G005170 vs. TAIR 10
Match: AT5G06320.1 (NDR1/HIN1-like 3 )

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-58
Identity = 114/228 (50.00%), Postives = 147/228 (64.47%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGHGRG-----------CACCLLSTIIKLIIGIVVVVGIAV 67
           LNGA+YGPS+PPP K  H HG   G           C CC+LS I  ++I I V++GIA 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASP 127
           LI+WL+FRPN ++F VT A+LT+F     N L YNL LN TIRNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVK 187
           +Y DQR   +  +  FYQGHK TTVV  +  GQQLVLL   E  + N +  + ++ ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 FRPRLRLKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQTTRCDFDF 223
            R ++R K G ++  + KPK+ C+LKVPL S++TS   FQ T+CD DF
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQPTKCDVDF 231

[Close]

BLAST of CmoCh06G005170 vs. TAIR 10
Match: AT3G11650.1 (NDR1/HIN1-like 2 )

HSP 1 Score: 212.6 bits (540), Expect = 3.2e-55
Identity = 110/238 (46.22%), Postives = 151/238 (63.45%), Query Frame = 0


Query: 1   MADKQPQLNGAFYGPSVPPPTK---TYHRHGHG-----------RGCACCLLSTIIKLII 60
           M  KQP LNGA+YGPS+PPP K   +Y+  G G           R C CC+LS I  ++I
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  GIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIG 120
            + V++G+A LILWL+FRPN ++F V  A L +F+F   N LHY+L LN TIRNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDAIEASPFYKDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKL 180
           VYYD    S +Y DQR  +  +  FYQGHK TTV+  +  GQ LV+LG    T+   ++ 
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC-ELKVPLESSATSFTF-FQTTRCDFD 222
           +G++ I+ K R  +R K   ++  KLKPK+ C +LK+PL SS ++  F FQ  +CDFD
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNSTGGFKFQPVQCDFD 238

[Close]

BLAST of CmoCh06G005170 vs. TAIR 10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 205.3 bits (521), Expect = 5.1e-53
Identity = 105/233 (45.06%), Postives = 147/233 (63.09%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGH-----GRG-CAC----------CLLSTIIKLIIGIVVV 67
           LNGA YGP + PP KTY+ HG      G G C C          CL++ I  ++IG++V 
Sbjct: 5   LNGASYGPPIKPPVKTYYSHGRRGSDVGCGICGCFSSCLLCCGGCLVNIICNILIGVLVC 64

Query: 68  VGIAVLILWLVFRPNKLRFDVTSAQLTQFNF--TGNQLHYNLALNLTIRNPNKRIGVYYD 127
           +G+  LILW + RPN ++F VT A LT+F F    + LHYN++LN +IRNPN+R+G++YD
Sbjct: 65  LGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYD 124

Query: 128 AIEASPFYKDQRLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVF 187
            +E   +Y DQR +   +  FYQGHK TTVV  + NGQ+LVLLGA    +F  ++ +GV+
Sbjct: 125 QLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVY 184

Query: 188 NIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESSATSFTF-FQTTRCDFD 222
            IDVK R +LR K G +    ++PK+ C LKVPL +S++   F F  T+C  D
Sbjct: 185 RIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQFHPTKCHVD 237

[Close]

BLAST of CmoCh06G005170 vs. TAIR 10
Match: AT1G32270.1 (syntaxin, putative )

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 0


Query: 64  RPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQRL 123
           R N ++F V  A+LT F+  + N L Y+L+LNL+IRN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLK 183
               +P FY G K T ++   F GQ LVLL   E  +F  ++  GV+ IDVK     R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 LGAVRIGKLKPKVNCELKVPLESSATSFT 212
           +  +    +KP V C LK+PL   +++ T
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPLALGSSNST 151

The following BLAST results are available for this feature:

BLAST of CmoCh06G005170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ52	9.6e-65	54.59	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9FNH6	1.5e-57	50.00	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
Q9SRN1	4.5e-54	46.22	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
Q9C615	4.8e-24	39.60	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]
Q9SRN0	8.3e-16	30.00	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]

BLAST of CmoCh06G005170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQR2	9.5e-124	100.00	NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111447589 PE=4 SV=...	[more]
A0A6J1GBL6	3.4e-121	98.20	NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111452658 PE=4 SV=...	[more]
A0A6J1L3J2	4.1e-119	96.85	NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498796 PE=4 SV=1	[more]
A0A5A7TKU8	3.9e-101	79.73	Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A1S3B6C1	3.9e-101	79.73	protein YLS9-like OS=Cucumis melo OX=3656 GN=LOC103486672 PE=4 SV=1	[more]

BLAST of CmoCh06G005170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35980.1	6.8e-66	54.59	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G06320.1	1.1e-58	50.00	NDR1/HIN1-like 3	[more]
AT3G11650.1	3.2e-55	46.22	NDR1/HIN1-like 2	[more]
AT2G35460.1	5.1e-53	45.06	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G32270.1	3.4e-25	39.60	syntaxin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 94..197 e-value: 1.3E-12 score: 48.1
None	No IPR available	PANTHER	PTHR31415:SF105	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 26..220
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 26..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005170.1	CmoCh06G005170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma