CmoCh06G005160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cmo_Chr06: 2492593 .. 2495182 (-)
RNA-Seq Expression	CmoCh06G005160
Synteny	CmoCh06G005160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAAACAACCCCATTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAGGCCACTCGCTGCGATTTCGATTTCTGATTGGCCACCTCCGGTTTTTGACTCAGTCAACTTTTGGTGATTGTTTTGACTGAGTCAACTATATGCATATTTTGATTTGTTCTTTTGATTATCATTTTTTTCATTGTTTTTTGTTTCTATGTTCATATGCTCTTTCCGGTTTTTAGCTGTTTTTATTATTATTATTATTATTTTGGTATGAATAAATATTTTAGTTTTGTATATATTTTTTATCGATTCGATAATGTCCTGACTTTCTACCACCTTAGATCAATCCGAGTTCGTTATAAAATGCATATTAAGGTCATTTGATTTTTTGAGGGACATTAAAATTGGTTAGTCCAAACCACAAAATAATGGTATAATTCTCGTGGGCACTCATAGGTAATTGTCATATGACCATATCACACACGAATAGGTAGAATAATGAAGAAAACAAAAGGTAAGAACATGGGTTTGGCTATTAAGAGCAACCAAAAAACTAAACTCATTCGATGTTAGGGTAATGGTGGTTAGAAAACACTCATACAACTAAGAGAGGCAATAAACCAACATACTATTATTCAACTGGTTACAGAATACATATATAGACAGAATAGCCACCTTAACCGTTAGTAACCACCCTTAACCGCTAGTAACCACCTTTAACCGCTACTAACTACCCTTAACTGACATACATTGAAATACAAACAGTAAATTAGATTAATTACGGTTAATACAAGATTAAATAAACTAACAAATCATCCCCTTAATCTTGTATTTCGATCTTCACATTCTTACATTCTTCAAACCACTTCTTTCAGTAAACGTTCTAACCATATTCCTTGACAAGCAGCTGACGTCGCCATAATATACTCTGCTTCACAGGATGAAAGCTGCCGCCATTATCTCTGCCTTCCTTCTTCTCTGTCTTCCTTTCAATGGGCAACTGCTTTTCATCGATAGTTTTAATTACCTGTTCTACTTGTCCGACCAATGGCTTTTCCTCAACAGGTTTAATTACCTGTGCTACTTCAATTGCACTGCCGGAAACAATGGCCTCCTTCTCCTTTTCCTTCTCTGCTTTCGTTTCTCCAGCGACCTGTTTTTCAATAGCACAGCCAGTGTTTCCGTCCTCCTTCTCCTTCTTCTCACCGTCACAGTCTTTCTCTTTTATCTCCTTTGCTTTTGCTACCTCTGTTGCTACATTCTGGACCTCCGCCACAACGCCATCGCTCTTCTCCTCGGATTCAAACTTCACAGTGCCAACGATTTTCTCACCATCGCTCTTCTTCTCTTCTCGCTTCTCTGTTTTTTCCTCCGATTCAATCTTCACAAAGCCATCGATTTTTCCCCCATCGATCATCTTCTCTGTTTTTTTCACAGACGCAGCCTTCACATCTCCACGTTCTTTTATCTCTCCAAGTGATCCATCTCCGAACTTCACCGTGCCGGTCACTGACTCGTTCAATTCTGAGAACCAACTTCGACAACCAGTCATGTGATTGCTGGCTCCCGTNNNNNNNNNNAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAGGCCACTCGCTGCGATTTCGATTTCTGA

mRNA sequence

ATGGCTGACAAACAACCCCATTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGCCACTCGCTGCGATTTCGATTTCTGATTGGCCACCTCCGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAGGCCACTCGCTGCGATTTCGATTTCTGA

Coding sequence (CDS)

ATGGCTGACAAACAACCCCATTTGAACGGCGCCTTCTACGGCCCCTCCGTCCCTCCCCCCACAAAGACCTACCACCGCCACGGCCACGGCCGAGGCTGCGCCTGCTGCCTCCTAAGCACCATTATCAAGCTCATCATTGGCATAGTGGTGGTGGTTGGCATAGCGGTGTTGATATTATGGCTCGTATTCCGTCCCAATAAGCTGAGGTTCGACGTCACCAGCGCCCAACTCACCCAATTCAACTTCACCGGCAACCAGCTCCATTACAATCTCGCTTTAAACCTCACCATTAGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGCCACTCGCTGCGATTTCGATTTCTGATTGGCCACCTCCGAAACCCCAACAAGCGGATTGGAGTGTACTACGACGCCATCGAAGCCTCCTCCTTTTACAAGGACCAGAGGCTTAACACCCAGTGGCTGCCGCCCTTCTACCAAGGCCACAAGACCACCACCGTCGTAACCCCTCAATTCAACGGCCAGCAGCTCGTCCTCCTCGGCGCCCAGGAGCTAACAGAGTTCAACGCCGAGAAGCTCGCAGGCGTGTTCAACATCGACGTGAAGTTTCGTCCACGGTTGAGGTTGAAATTGGGCGCCGTTAGGATTGGGAAGTTGAAGCCAAAGGTCAACTGCGAATTGAAGGTTCCATTGGAATCAAGTGCCACCTCTTTTACTTTCTTTCAGGCCACTCGCTGCGATTTCGATTTCTGA

Protein sequence

MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESSHSLRFRFLIGHLRNPNKRIGVYYDAIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESSATSFTFFQATRCDFDF

Homology

[Close]

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot
Match: Q9SJ52 (NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.7e-63
Identity = 118/211 (55.92%), Postives = 160/211 (75.83%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPT-KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLIL 60
           MA +QP LNGAFYGPSVPPP  K Y+R GHGRGC CCLLS  +K+II ++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLRFDVTSAQLTQFNFTG--NQLHYNLALNLTIRNPNKRIGVYYDAIEASSFY 120
           WL+ RP  ++F VT A LT+F+ T   N L YNLAL + +RNPNKRIG+YYD IEA ++Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRP 180
           + +R +T  L PFYQGHK TTV+TP F GQ LV+  A +    NAE+++GV+NI++KFR 
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKLGAVRIGKLKPKVNC-ELKVPLESSH 208
           R+R KLG ++  ++KPKV+C +L++PL +S+
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSN 210

[Close]

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot
Match: Q9FNH6 (NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-52
Identity = 107/219 (48.86%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGHGRG-----------CACCLLSTIIKLIIGIVVVVGIAV 67
           LNGA+YGPS+PPP K  H HG   G           C CC+LS I  ++I I V++GIA 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASS 127
           LI+WL+FRPN ++F VT A+LT+F     N L YNL LN TIRNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVK 187
           +Y DQR   +  +  FYQGHK TTVV  +  GQQLVLL   E  + N +  + ++ ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 FRPRLRLKLGAVRIGKLKPKVNCELKVPLESSHSLRFRF 214
            R ++R K G ++  + KPK+ C+LKVPL S+ +  F F
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVF 222

[Close]

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.5e-52
Identity = 104/224 (46.43%), Postives = 144/224 (64.29%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTK---TYHRHGHG-----------RGCACCLLSTIIKLII 60
           M  KQP+LNGA+YGPS+PPP K   +Y+  G G           R C CC+LS I  ++I
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  GIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIG 120
            + V++G+A LILWL+FRPN ++F V  A L +F+F   N LHY+L LN TIRNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDAIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKL 180
           VYYD    S +Y DQR  +  +  FYQGHK TTV+  +  GQ LV+LG    T+   ++ 
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC-ELKVPLESSHS 209
           +G++ I+ K R  +R K   ++  KLKPK+ C +LK+PL SS+S
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNS 224

[Close]

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot
Match: Q9C615 (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.8e-23
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 64  RPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQRL 123
           R N ++F V  A+LT F+  + N L Y+L+LNL+IRN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLK 183
               +P FY G K T ++   F GQ LVLL   E  +F  ++  GV+ IDVK     R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 LGAVRIGKLKPKVNCELKVPL 204
           +  +    +KP V C LK+PL
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPL 143

[Close]

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot
Match: Q9SRN0 (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.8e-16
Identity = 54/180 (30.00%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 22  KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFN 81
           K    HGH R     L+  I   II ++ ++ + +L++W + +P+K RF +  A +  FN
Sbjct: 2   KDCENHGHSRR---KLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFN 61

Query: 82  FTGNQ---LHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQRLN-TQWLPPFYQGHKTT 141
            +GN    L  N  + L+ RNPN +IG+YYD ++  + Y+ Q++     +PP YQGHK  
Sbjct: 62  VSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDV 121

Query: 142 TVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC 198
            + +P   G  + +     ++  + +K  GV  + ++   R+R K+G    GK    V C
Sbjct: 122 DIWSPFVYGTSVPIAPFNGVS-LDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 177

[Close]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL
Match: A0A6J1GBL6 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111452658 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.8e-113
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120
           LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESS 207
           LKLGAVRIGKLKPKVNCELKVPLESS
Sbjct: 181 LKLGAVRIGKLKPKVNCELKVPLESS 206

[Close]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL
Match: A0A6J1FQR2 (NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111447589 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 2.2e-111
Identity = 203/206 (98.54%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQP LNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPQLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120
           LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEAS FYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVV PQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVAPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESS 207
           LKLGAVRIGKLKPKVNCELKVPLESS
Sbjct: 181 LKLGAVRIGKLKPKVNCELKVPLESS 206

[Close]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL
Match: A0A6A1WBD8 (Protein YLS9 OS=Morella rubra OX=262757 GN=CJ030_MR2G007341 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 4.9e-111
Identity = 202/391 (51.66%), Postives = 266/391 (68.03%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRG----CAC-------CLLSTIIKLIIGIV 60
           MA+KQ HLNGAFYGPS+PPP + Y+R   G G    C C       C+   I KL+  ++
Sbjct: 1   MAEKQSHLNGAFYGPSIPPPRRAYNRPSRGSGGCGCCGCLFGCLCDCIFGLIFKLVFTVL 60

Query: 61  VVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYY 120
           +++G+A L++WLV RPN L+F+VT A LTQFN  + N L YNLALN+T+RNPNKRIG+YY
Sbjct: 61  IIIGLAALVVWLVLRPNNLKFNVTDASLTQFNLDSNNTLQYNLALNITVRNPNKRIGIYY 120

Query: 121 DAIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGV 180
           D I+A+++Y+DQR NT  L PFYQGHK T+V+TP F+GQQLVLLG  EL+ FN+EK  G+
Sbjct: 121 DTIQANAYYEDQRFNTVTLTPFYQGHKNTSVLTPAFDGQQLVLLGTSELSTFNSEKSNGI 180

Query: 181 FNIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESS----------------HSLRFR 240
           ++IDVK   R+R K+G ++IG  KPK+NC+LKVPL SS                ++L+F 
Sbjct: 181 YSIDVKLNLRIRTKMGLIKIGHFKPKINCDLKVPLSSSGTSTGSFETTKCVLRPNNLKFN 240

Query: 241 FLIGHL---------------------RNPNKRIGVYYDAIEASSFYKDQRLNTQWLPPF 300
                L                     RNPNKRIG+YYD I+A+++Y+DQR NT  L PF
Sbjct: 241 VTDASLTQFNLDSNNTLQYNLALNITVRNPNKRIGIYYDTIQANAYYEDQRFNTVTLTPF 300

Query: 301 YQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLKLGAVRIGK 343
           YQGHK T+V+TP F+GQQLVLLG  EL+ FN+EK  G+++IDVK   R+R K+G ++IG 
Sbjct: 301 YQGHKNTSVLTPAFDGQQLVLLGTSELSTFNSEKSNGIYSIDVKLNLRIRTKMGLIKIGH 360

[Close]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL
Match: A0A6J1L3J2 (NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498796 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 7.1e-110
Identity = 201/206 (97.57%), Postives = 203/206 (98.54%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQPHLNGAFYGPSVPPPTKTYHR GHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW
Sbjct: 1   MADKQPHLNGAFYGPSVPPPTKTYHRPGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120
           LVFRPNKLRFDVTSA+LTQFNFTGNQL YNLALNLTIRNPNKRIGVYYDAIEAS FYKDQ
Sbjct: 61  LVFRPNKLRFDVTSAELTQFNFTGNQLRYNLALNLTIRNPNKRIGVYYDAIEASPFYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR
Sbjct: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESS 207
           LKLGAVRIGKLKPKV+CELKVPLESS
Sbjct: 181 LKLGAVRIGKLKPKVHCELKVPLESS 206

[Close]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL
Match: A0A0A0LGS5 (Hairpin-inducing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779010 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.0e-92
Identity = 161/206 (78.16%), Postives = 186/206 (90.29%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTKTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLILW 60
           MADKQPHLNGAFYGP+VPPP KTYHRHGHGRGCACCLL+T +K +I IVVV+G+AVL+ W
Sbjct: 1   MADKQPHLNGAFYGPAVPPPAKTYHRHGHGRGCACCLLTTFLKFLIAIVVVLGVAVLVFW 60

Query: 61  LVFRPNKLRFDVTSAQLTQFNFTGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQ 120
           LVFRPNKL+FDVT AQLT+FN +GNQLHY+LALNLT+RNPNKRIGVYYD IEAS +YKDQ
Sbjct: 61  LVFRPNKLKFDVTGAQLTRFNVSGNQLHYDLALNLTVRNPNKRIGVYYDVIEASPYYKDQ 120

Query: 121 RLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLR 180
           RLNTQWL PFYQGHKTT+V++PQF+GQQ+V+    +LTEFN E LAGVF +DVK R RLR
Sbjct: 121 RLNTQWLTPFYQGHKTTSVLSPQFDGQQIVIFAGDKLTEFNGETLAGVFEVDVKIRLRLR 180

Query: 181 LKLGAVRIGKLKPKVNCELKVPLESS 207
           LK+GAVRIGK +PKVNCELKVPL+S+
Sbjct: 181 LKVGAVRIGKFRPKVNCELKVPLKSN 206

[Close]

BLAST of CmoCh06G005160 vs. TAIR 10
Match: AT2G35980.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 243.4 bits (620), Expect = 2.6e-64
Identity = 118/211 (55.92%), Postives = 160/211 (75.83%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPT-KTYHRHGHGRGCACCLLSTIIKLIIGIVVVVGIAVLIL 60
           MA +QP LNGAFYGPSVPPP  K Y+R GHGRGC CCLLS  +K+II ++V++G+A LI 
Sbjct: 1   MAAEQP-LNGAFYGPSVPPPAPKGYYRRGHGRGCGCCLLSLFVKVIISLIVILGVAALIF 60

Query: 61  WLVFRPNKLRFDVTSAQLTQFNFTG--NQLHYNLALNLTIRNPNKRIGVYYDAIEASSFY 120
           WL+ RP  ++F VT A LT+F+ T   N L YNLAL + +RNPNKRIG+YYD IEA ++Y
Sbjct: 61  WLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYY 120

Query: 121 KDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRP 180
           + +R +T  L PFYQGHK TTV+TP F GQ LV+  A +    NAE+++GV+NI++KFR 
Sbjct: 121 EGKRFSTITLTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERISGVYNIEIKFRL 180

Query: 181 RLRLKLGAVRIGKLKPKVNC-ELKVPLESSH 208
           R+R KLG ++  ++KPKV+C +L++PL +S+
Sbjct: 181 RVRFKLGDLKFRRIKPKVDCDDLRLPLSTSN 210

[Close]

BLAST of CmoCh06G005160 vs. TAIR 10
Match: AT5G06320.1 (NDR1/HIN1-like 3 )

HSP 1 Score: 208.4 bits (529), Expect = 9.3e-54
Identity = 107/219 (48.86%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGHGRG-----------CACCLLSTIIKLIIGIVVVVGIAV 67
           LNGA+YGPS+PPP K  H HG   G           C CC+LS I  ++I I V++GIA 
Sbjct: 4   LNGAYYGPSIPPPKKVSHSHGRRGGGCGCLGDCLGCCGCCILSVIFNILITIAVLLGIAA 63

Query: 68  LILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASS 127
           LI+WL+FRPN ++F VT A+LT+F     N L YNL LN TIRNPN+RIGVYYD IE   
Sbjct: 64  LIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNFTIRNPNRRIGVYYDEIEVRG 123

Query: 128 FYKDQRLN-TQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVK 187
           +Y DQR   +  +  FYQGHK TTVV  +  GQQLVLL   E  + N +  + ++ ID K
Sbjct: 124 YYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNSQIYRIDAK 183

Query: 188 FRPRLRLKLGAVRIGKLKPKVNCELKVPLESSHSLRFRF 214
            R ++R K G ++  + KPK+ C+LKVPL S+ +  F F
Sbjct: 184 LRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVF 222

[Close]

BLAST of CmoCh06G005160 vs. TAIR 10
Match: AT3G11650.1 (NDR1/HIN1-like 2 )

HSP 1 Score: 206.1 bits (523), Expect = 4.6e-53
Identity = 104/224 (46.43%), Postives = 144/224 (64.29%), Query Frame = 0


Query: 1   MADKQPHLNGAFYGPSVPPPTK---TYHRHGHG-----------RGCACCLLSTIIKLII 60
           M  KQP+LNGA+YGPS+PPP K   +Y+  G G           R C CC+LS I  ++I
Sbjct: 1   MGSKQPYLNGAYYGPSIPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILI 60

Query: 61  GIVVVVGIAVLILWLVFRPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIG 120
            + V++G+A LILWL+FRPN ++F V  A L +F+F   N LHY+L LN TIRNPN+R+G
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVG 120

Query: 121 VYYDAIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKL 180
           VYYD    S +Y DQR  +  +  FYQGHK TTV+  +  GQ LV+LG    T+   ++ 
Sbjct: 121 VYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEK 180

Query: 181 AGVFNIDVKFRPRLRLKLGAVRIGKLKPKVNC-ELKVPLESSHS 209
           +G++ I+ K R  +R K   ++  KLKPK+ C +LK+PL SS+S
Sbjct: 181 SGIYRINAKLRLSVRFKFWFIKSWKLKPKIKCDDLKIPLGSSNS 224

[Close]

BLAST of CmoCh06G005160 vs. TAIR 10
Match: AT2G35460.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 201.1 bits (510), Expect = 1.5e-51
Identity = 104/225 (46.22%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 8   LNGAFYGPSVPPPTKTYHRHGH-----GRG-CAC----------CLLSTIIKLIIGIVVV 67
           LNGA YGP + PP KTY+ HG      G G C C          CL++ I  ++IG++V 
Sbjct: 5   LNGASYGPPIKPPVKTYYSHGRRGSDVGCGICGCFSSCLLCCGGCLVNIICNILIGVLVC 64

Query: 68  VGIAVLILWLVFRPNKLRFDVTSAQLTQFNF--TGNQLHYNLALNLTIRNPNKRIGVYYD 127
           +G+  LILW + RPN ++F VT A LT+F F    + LHYN++LN +IRNPN+R+G++YD
Sbjct: 65  LGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHNLHYNISLNFSIRNPNQRLGIHYD 124

Query: 128 AIEASSFYKDQRLNTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVF 187
            +E   +Y DQR +   +  FYQGHK TTVV  + NGQ+LVLLGA    +F  ++ +GV+
Sbjct: 125 QLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGGRRDFREDRRSGVY 184

Query: 188 NIDVKFRPRLRLKLGAVRIGKLKPKVNCELKVPLESSHS-LRFRF 214
            IDVK R +LR K G +    ++PK+ C LKVPL +S S  RF+F
Sbjct: 185 RIDVKLRFKLRFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQF 229

[Close]

BLAST of CmoCh06G005160 vs. TAIR 10
Match: AT1G32270.1 (syntaxin, putative )

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-24
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 64  RPNKLRFDVTSAQLTQFNF-TGNQLHYNLALNLTIRNPNKRIGVYYDAIEASSFYKDQRL 123
           R N ++F V  A+LT F+  + N L Y+L+LNL+IRN    IG++YD  EA+ +Y +QRL
Sbjct: 3   RSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRL 62

Query: 124 NTQWLPPFYQGHKTTTVVTPQFNGQQLVLLGAQELTEFNAEKLAGVFNIDVKFRPRLRLK 183
               +P FY G K T ++   F GQ LVLL   E  +F  ++  GV+ IDVK     R+ 
Sbjct: 63  GAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVM 122

Query: 184 LGAVRIGKLKPKVNCELKVPL 204
           +  +    +KP V C LK+PL
Sbjct: 123 VLHLVTWPMKPVVRCHLKIPL 143

The following BLAST results are available for this feature:

BLAST of CmoCh06G005160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ52	3.7e-63	55.92	NDR1/HIN1-like protein 10 OS=Arabidopsis thaliana OX=3702 GN=NHL10 PE=2 SV=1	[more]
Q9FNH6	1.3e-52	48.86	NDR1/HIN1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=NHL3 PE=1 SV=1	[more]
Q9SRN1	6.5e-52	46.43	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
Q9C615	2.8e-23	41.13	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]
Q9SRN0	9.8e-16	30.00	NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1	[more]

BLAST of CmoCh06G005160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBL6	1.8e-113	100.00	NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111452658 PE=4 SV=...	[more]
A0A6J1FQR2	2.2e-111	98.54	NDR1/HIN1-like protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111447589 PE=4 SV=...	[more]
A0A6A1WBD8	4.9e-111	51.66	Protein YLS9 OS=Morella rubra OX=262757 GN=CJ030_MR2G007341 PE=4 SV=1	[more]
A0A6J1L3J2	7.1e-110	97.57	NDR1/HIN1-like protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111498796 PE=4 SV=1	[more]
A0A0A0LGS5	1.0e-92	78.16	Hairpin-inducing protein OS=Cucumis sativus OX=3659 GN=Csa_3G779010 PE=4 SV=1	[more]

BLAST of CmoCh06G005160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35980.1	2.6e-64	55.92	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G06320.1	9.3e-54	48.86	NDR1/HIN1-like 3	[more]
AT3G11650.1	4.6e-53	46.43	NDR1/HIN1-like 2	[more]
AT2G35460.1	1.5e-51	46.22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G32270.1	2.0e-24	41.13	syntaxin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 94..197 e-value: 5.4E-13 score: 49.4 coord: 218..318 e-value: 1.4E-11 score: 44.8
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 26..206
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 218..341
None	No IPR available	PANTHER	PTHR31415:SF105	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 218..341
None	No IPR available	PANTHER	PTHR31415:SF105	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 26..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005160.1	CmoCh06G005160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma