CmoCh06G005090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G005090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionEarly nodulin-20-like
LocationCmo_Chr06: 2449598 .. 2450095 (-)
RNA-Seq ExpressionCmoCh06G005090
SyntenyCmoCh06G005090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA

mRNA sequence

ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA

Coding sequence (CDS)

ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA

Protein sequence

MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIKSSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY
Homology
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A6J1H3M0 (uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC111459312 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60
           MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
           SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY 166
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY 165

BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A6J1KY03 (uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60
           MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAF+ATKSSGGSAASPPLAFELFP+K
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFSATKSSGGSAASPPLAFELFPVK 60

Query: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
           SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY 166
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY 165

BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A0A0LE45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MDD SA KP  P  NLRRRNSI VPV VPSKLNL   AATKSS G+ ASP  PLAFEL P
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNL--LAATKSSRGAEASPRLPLAFELVP 60

Query: 61  IKSSSH----SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 120
           IKSSS     SL YTSL+DILPSPT+ SSPTA SAANSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFV 165
           SSSPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG +FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A5A7TKK1 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004370 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MD+ SA KP PP  NLRRRNSI VPV VPSKLNL   AATK S G+ ASP  PLAFEL P
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNL--LAATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSH----SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 120
           IKSSS     SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFV 165
           SSSPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG +FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A1S3B6B1 (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58
Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0

Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASP--PLAFELFP 60
           MD+ SA KP PP  NLRRRNSI VPV VPSKLNL   AATK S G+ ASP  PLAFEL P
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNL--LAATKPSRGAEASPPLPLAFELVP 60

Query: 61  IKSSSH----SLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPM 120
           IKSSS     SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPM
Sbjct: 61  IKSSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPM 120

Query: 121 SSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFV 165
           SSSPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG +FV
Sbjct: 121 SSSPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVGINFV 168

BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0

Query: 12  PPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAF--ELFPIKSSSHSLTYT 71
           P   LRR  SI+         N+      +     A++PP +F  EL  +K SS  + YT
Sbjct: 9   PATQLRRTKSIS---------NMTTLTPPEVPFDIASTPPSSFDYELISVKPSSF-VAYT 68

Query: 72  SLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYLQP--MSSS 131
           SLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YLQP  ++SS
Sbjct: 69  SLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTVLTSS 128

Query: 132 PGSSGPHLLRRIWLRFSACLGFL 141
             S+G    RR+WL  SA   FL
Sbjct: 129 DDSAGSQFFRRVWLHLSAGFQFL 138

BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0

Query: 12  PPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAF--ELFPIKSSSHSLTYT 71
           P   LRR  SI+         N+      +     A++PP +F  EL  +K SS  + YT
Sbjct: 9   PATQLRRTKSIS---------NMTTLTPPEVPFDIASTPPSSFDYELISVKPSSF-VAYT 68

Query: 72  SLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYLQP--MSSS 131
           SLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YLQP  ++SS
Sbjct: 69  SLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYLQPTVLTSS 128

Query: 132 PGSSGPHLLRRIWLRFSACLGFL 141
             S+G    RR+WL  SA   FL
Sbjct: 129 DDSAGSQFFRRVWLHLSAGFQFL 138

BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 0

Query: 47  AASPPLAFELFPIKSSSHS--LTYTSLRDILP-SPTSMSSPT---AASAANSGFEISIRN 106
           A S  L  EL  +  SS      YTSL+DILP S T++ SP    A ++A SG  I+IRN
Sbjct: 18  AVSQTLDLELVSVNKSSEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRN 77

Query: 107 RLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIF 157
           RLVKQAA +YLQP + +P SS P  LRR+   F        + ++S+   AL RIF
Sbjct: 78  RLVKQAACSYLQPSTPTP-SSNPSFLRRVSSSF--------IRLVSAFFDALLRIF 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H3M01.2e-83100.00uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC1114593... [more]
A0A6J1KY033.5e-8398.79uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593... [more]
A0A0A0LE454.7e-5979.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1[more]
A0A5A7TKK11.0e-5879.41Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3B6B11.0e-5879.41uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=... [more]
Match NameE-valueIdentityDescription
AT5G06280.11.9e-1240.56unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G06280.31.9e-1240.56unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52520.11.4e-1044.83unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569:SF2EXPRESSED PROTEINcoord: 8..155
NoneNo IPR availablePANTHERPTHR34569EXPRESSED PROTEINcoord: 8..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G005090.1CmoCh06G005090.1mRNA