CmoCh06G005090 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA ATGGACGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTCCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTTGTGCCATCAAAACTAAACCTTTTCGCCTTCGCCGCCACCAAGTCCTCTGGCGGCTCAGCTGCATCGCCGCCATTGGCTTTCGAGCTCTTCCCGATTAAATCCTCCTCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCTGCCTCTGCAGCAAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGCGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAA MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIKSSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFSFVY Homology
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A6J1H3M0 (uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC111459312 PE=4 SV=1) HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A6J1KY03 (uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83 Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A0A0LE45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59 Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A5A7TKK1 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004370 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58 Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0
BLAST of CmoCh06G005090 vs. ExPASy TrEMBL
Match: A0A1S3B6B1 (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 1.0e-58 Identity = 135/170 (79.41%), Postives = 141/170 (82.94%), Query Frame = 0
BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12 Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0
BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12 Identity = 58/143 (40.56%), Postives = 76/143 (53.15%), Query Frame = 0
BLAST of CmoCh06G005090 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10 Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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