CmoCh06G004860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G004860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAuxin-responsive protein
LocationCmo_Chr06: 2342169 .. 2342525 (+)
RNA-Seq ExpressionCmoCh06G004860
SyntenyCmoCh06G004860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGAAAAGGATACCGAGTTTGAAGAAATTGGTTAAGACGAACAAGATTCGACCCGGAAAATGTATACTAGCATCAAAGATGGCAGCAAGTAGTGGTCGGAACACGACGCCGAGAGGGTGTGTGGTTTTGTATGTCGGAGAAGAATATCGAAGATTTGTGGTACCGACTAAGTTTCTTTGTCATCCACTCTTCAAGATGGTGTTGGATAAAGCCTACAACGAGTTTGGGTTCGATCAAAGAAATGGTCTCGTGGTTCCTTGCAATGTTTTTGCTTTTCAAGAGATTTTGAATACTATTGAAGCTAATCGCGGTAGCTTTCACTTTGGGGAACATGTTCATGAGTTCGTTTGA

mRNA sequence

ATGTTGAAGAAAAGGATACCGAGTTTGAAGAAATTGGTTAAGACGAACAAGATTCGACCCGGAAAATGTATACTAGCATCAAAGATGGCAGCAAGTAGTGGTCGGAACACGACGCCGAGAGGGTGTGTGGTTTTGTATGTCGGAGAAGAATATCGAAGATTTGTGGTACCGACTAAGTTTCTTTGTCATCCACTCTTCAAGATGGTGTTGGATAAAGCCTACAACGAGTTTGGGTTCGATCAAAGAAATGGTCTCGTGGTTCCTTGCAATGTTTTTGCTTTTCAAGAGATTTTGAATACTATTGAAGCTAATCGCGGTAGCTTTCACTTTGGGGAACATGTTCATGAGTTCGTTTGA

Coding sequence (CDS)

ATGTTGAAGAAAAGGATACCGAGTTTGAAGAAATTGGTTAAGACGAACAAGATTCGACCCGGAAAATGTATACTAGCATCAAAGATGGCAGCAAGTAGTGGTCGGAACACGACGCCGAGAGGGTGTGTGGTTTTGTATGTCGGAGAAGAATATCGAAGATTTGTGGTACCGACTAAGTTTCTTTGTCATCCACTCTTCAAGATGGTGTTGGATAAAGCCTACAACGAGTTTGGGTTCGATCAAAGAAATGGTCTCGTGGTTCCTTGCAATGTTTTTGCTTTTCAAGAGATTTTGAATACTATTGAAGCTAATCGCGGTAGCTTTCACTTTGGGGAACATGTTCATGAGTTCGTTTGA

Protein sequence

MLKKRIPSLKKLVKTNKIRPGKCILASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGEHVHEFV
Homology
BLAST of CmoCh06G004860 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-11
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 0

Query: 39  PRGCVVLYV---GEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQ 98
           P+GC+ + V   GEE +RF+VP  +  HPLF  +L +A +E+GFDQ+  + +PC+V  F+
Sbjct: 25  PKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEFR 84

Query: 99  EILNTIEANRGSFHFGEHVH 116
            +   I+  R  ++   H H
Sbjct: 85  YVQALIDGERSVYNGNNHHH 104

BLAST of CmoCh06G004860 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-10
Identity = 27/66 (40.91%), Postives = 44/66 (66.67%), Query Frame = 0

Query: 36  NTTPRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQ 95
           NT P G V +YVGEE  RFVV  + + HP+F  +L+++  E+G+ Q+  L +PC+V  F+
Sbjct: 52  NTVPAGHVPVYVGEEMERFVVSAELMNHPIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFE 111

Query: 96  EILNTI 102
            ++ T+
Sbjct: 112 RVVETL 117

BLAST of CmoCh06G004860 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 39  PRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEIL 98
           P+G   +YVGE   R++VP  FL HP F+ +L +A  EFGFD   GL +PC+   FQ + 
Sbjct: 44  PKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLT 103

Query: 99  NTI 102
           + I
Sbjct: 104 SMI 106

BLAST of CmoCh06G004860 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-10
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 25  LASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQ-RN 84
           L+++  ASS     P+G + +YVGE  +RFV+P   L  PLF+ +L +A  EFG+D    
Sbjct: 12  LSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMG 71

Query: 85  GLVVPCNVFAFQEILNTIEA 104
           GL +PC+   FQ I + + A
Sbjct: 72  GLTIPCSEDLFQHITSCLSA 91

BLAST of CmoCh06G004860 vs. ExPASy Swiss-Prot
Match: Q9LTV3 (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 0

Query: 12  LVKTNKIRPGK---CILASKMAASSGRNTT--PRGCVVLYVGEEYRRFVVPTKFLCHPLF 71
           L++++  RP +     L S +   S + T+  P G V +YVG+E  RFVV  + L HP+F
Sbjct: 19  LLRSDSQRPSRRSESFLRSSVTRRSKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVF 78

Query: 72  KMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTI 102
             +L+++  E+G++Q+  L +PC+V  F+ I+ ++
Sbjct: 79  IGLLNRSAQEYGYEQKGVLQIPCHVLVFERIMESL 113

BLAST of CmoCh06G004860 vs. ExPASy TrEMBL
Match: A0A5A7TKN6 (Auxin-responsive protein SAUR15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G002080 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.4e-41
Identity = 87/119 (73.11%), Postives = 99/119 (83.19%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVK-TNKIRPGKCILASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPTK 60
           MLK R+PSLKKL K + + RP   +LAS+M A  GR  TPRGCV LYVGEE RRFVVPT+
Sbjct: 1   MLKNRVPSLKKLAKASGERRPDDSLLASEMEAGGGRCPTPRGCVALYVGEECRRFVVPTR 60

Query: 61  FLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGEHVHEFV 119
           FLCHPLF+MVLDK Y EFGF+Q++GLVV C+VFAFQEILNTIEAN GSFHFGE VHEF+
Sbjct: 61  FLCHPLFRMVLDKTYKEFGFNQKSGLVVSCSVFAFQEILNTIEANHGSFHFGELVHEFL 119

BLAST of CmoCh06G004860 vs. ExPASy TrEMBL
Match: A0A0A0LAX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777530 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.0e-40
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVKTN--KIRPGKCILASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPT 60
           MLK R+PSLKK+ K N  + R    +LAS+M A  GR  TPRGCV LYVGEE RRFVVPT
Sbjct: 1   MLKNRVPSLKKVAKGNNGERRHEDSLLASEMEAGGGRCPTPRGCVALYVGEECRRFVVPT 60

Query: 61  KFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGEHVHEFV 119
           +FLCHPLFKMVLDK Y EFGF+Q++GLVV C+VFAFQEILNTIEAN GSFHFGE VHEF+
Sbjct: 61  RFLCHPLFKMVLDKTYKEFGFNQKSGLVVSCSVFAFQEILNTIEANHGSFHFGELVHEFL 120

BLAST of CmoCh06G004860 vs. ExPASy TrEMBL
Match: A0A2K3P6J9 (SAUR family protein OS=Trifolium pratense OX=57577 GN=L195_g007511 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.8e-28
Identity = 69/125 (55.20%), Postives = 85/125 (68.00%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVKTNKIRPG-------KCILASKMAASSGRNTTPRGCVVLYVGEEYRR 60
           ML K++ SLKKL K  K   G       +C+L       S  NTTP G   LYVGEE++R
Sbjct: 1   MLGKKMVSLKKLAKKVKASGGADPNTNHECLLKGYQEEFS-TNTTPTGYFALYVGEEHQR 60

Query: 61  FVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGEH 119
            VVPT +L HPLFKM+L+K+YNEFGF+QRNGLVVPC+V  FQE++N IE N G FH G+ 
Sbjct: 61  NVVPTSYLSHPLFKMLLEKSYNEFGFEQRNGLVVPCSVSTFQEVVNAIECNNGKFHLGKI 120

BLAST of CmoCh06G004860 vs. ExPASy TrEMBL
Match: A0A438JSC1 (Auxin-responsive protein SAUR50 OS=Vitis vinifera OX=29760 GN=SAUR50_6 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVKTNKIRPG--------KCILASKMAASSGRNTTPRGCVVLYVGEEYR 60
           ML K++ S+KKLVK  K+  G        +C+L       S   TTP G   +YVGEE +
Sbjct: 1   MLGKKMGSVKKLVKKVKVIGGGDREPSHHECLLRD-YEEGSPSGTTPTGSFAVYVGEERQ 60

Query: 61  RFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGE 119
           RFVVPT FL HPLFKM+L+KAYNEFGFDQRNGLVVPC+V  FQE++N +E   G F FG 
Sbjct: 61  RFVVPTSFLSHPLFKMLLEKAYNEFGFDQRNGLVVPCSVSTFQEVVNAVECCNGKFDFGN 120

BLAST of CmoCh06G004860 vs. ExPASy TrEMBL
Match: D7TJ88 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g03120 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVKTNKIRPG--------KCILASKMAASSGRNTTPRGCVVLYVGEEYR 60
           ML K++ S+KKLVK  K+  G        +C+L       S   TTP G   +YVGEE +
Sbjct: 1   MLGKKMGSVKKLVKKVKVIGGGDREPSHHECLLRD-YEEGSPSGTTPTGSFAVYVGEERQ 60

Query: 61  RFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEILNTIEANRGSFHFGE 119
           RFVVPT FL HPLFKM+L+KAYNEFGFDQRNGLVVPC+V  FQE++N +E   G F FG 
Sbjct: 61  RFVVPTSFLSHPLFKMLLEKAYNEFGFDQRNGLVVPCSVSTFQEVVNAVECCNGKFDFGN 120

BLAST of CmoCh06G004860 vs. TAIR 10
Match: AT2G36210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-19
Identity = 55/135 (40.74%), Postives = 78/135 (57.78%), Query Frame = 0

Query: 1   MLKKRIPSLKKLVKTNK-----IRPG-----------KCILASKMAASSGRNTTPRGCVV 60
           ML KRI S K L K  K      R G             ++     A+   + TP G   
Sbjct: 1   MLGKRIASFKNLAKKMKSINTTTRSGGEGGSESTYNESLLMNEADEAAMMASKTPTGTFA 60

Query: 61  LYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEF-GFDQRNGLVVPCNVFAFQEILNTIEA 119
           +YVGEE  + VVPT +L HPLF+M+LDK+++EF  F+Q+  LVVPC++  FQ+++N +E+
Sbjct: 61  VYVGEERVKRVVPTSYLNHPLFRMLLDKSHDEFLCFEQKVMLVVPCSLSVFQDVVNAVES 120

BLAST of CmoCh06G004860 vs. TAIR 10
Match: AT5G20810.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-16
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 39  PRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEIL 98
           P+G + +YVG E RRF++PT +L H LFK++L+KA  EFGFDQ   L +PC V  F+ +L
Sbjct: 80  PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLL 139

Query: 99  NTIEANRGSFH 110
             +E N    H
Sbjct: 140 KCMENNLKDLH 150

BLAST of CmoCh06G004860 vs. TAIR 10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 81.6 bits (200), Expect = 4.5e-16
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 39  PRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEIL 98
           P+G + +YVG E RRF++PT +L H LFK++L+KA  EFGFDQ   L +PC V  F+ +L
Sbjct: 80  PKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLL 139

Query: 99  NTIEANRGSFH 110
             +E N    H
Sbjct: 140 KCMENNLKDLH 150

BLAST of CmoCh06G004860 vs. TAIR 10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-15
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 39  PRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNGLVVPCNVFAFQEIL 98
           P+G + +YVG E RRF++PT FL H LFK++L+KA  E+GFD    L +PC V  F+ +L
Sbjct: 80  PKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLL 139

Query: 99  NTIE 103
             IE
Sbjct: 140 KCIE 143

BLAST of CmoCh06G004860 vs. TAIR 10
Match: AT5G66260.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 25  LASKMAASSGRNTTPRGCVVLYVGEEYRRFVVPTKFLCHPLFKMVLDKAYNEFGFDQRNG 84
           L  K +     N  P+G  V+YVG    R V+P  FL HP+F+M+L ++  EFGF Q NG
Sbjct: 21  LGKKSSVDVNFNGVPKGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNG 80

Query: 85  LVVPCNVFAFQEILNTI 102
           L +PC+   F+ ++++I
Sbjct: 81  LTIPCDEHFFRALISSI 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZUZ31.5e-1137.50Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S... [more]
Q9SA491.6e-1040.91Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 S... [more]
O656952.8e-1044.44Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S... [more]
P322954.7e-1040.00Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 ... [more]
Q9LTV38.0e-1033.68Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A5A7TKN62.4e-4173.11Auxin-responsive protein SAUR15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0LAX72.0e-4072.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777530 PE=3 SV=1[more]
A0A2K3P6J96.8e-2855.20SAUR family protein OS=Trifolium pratense OX=57577 GN=L195_g007511 PE=3 SV=1[more]
A0A438JSC12.0e-2755.56Auxin-responsive protein SAUR50 OS=Vitis vinifera OX=29760 GN=SAUR50_6 PE=3 SV=1[more]
D7TJ882.0e-2755.56Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0007g03120 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT2G36210.15.7e-1940.74SAUR-like auxin-responsive protein family [more]
AT5G20810.14.5e-1647.89SAUR-like auxin-responsive protein family [more]
AT5G20810.24.5e-1647.89SAUR-like auxin-responsive protein family [more]
AT3G43120.16.5e-1550.00SAUR-like auxin-responsive protein family [more]
AT5G66260.14.7e-1340.26SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 22..100
e-value: 1.4E-22
score: 79.7
NoneNo IPR availablePANTHERPTHR31374:SF28SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILYcoord: 1..118
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G004860.1CmoCh06G004860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin