CmoCh06G003620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G003620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-binding protein S1FA
Location	Cmo_Chr06: 1751601 .. 1753781 (-)
RNA-Seq Expression	CmoCh06G003620
Synteny	CmoCh06G003620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTGCTGACATTTCTCCGTCAACGCTGCACCGCCAATTCGATCCAATTTCGTATATTCGGGATCTTCTTGCTGGCCGATCTAGCCAGCTCTGAGTCGCAGTCATGGCGTCAGCCAATGGTAAGGTACGATTGTCGAAGGAATCCCGCTTAGTTTCTTGCCTTTTGCGTTCAATTTCACGATCTGTCCGTTTTGGATTCCTTTTTTTTTTTTTATTGTGTTCGAATGCCTTTTTCCTTCAATTTTATTGTTTGGATCTATCTGTGTGTGTTGAGAATCGTCTTTTCTTCTTTTCTGAAAGCTTGATTTCATCTGGTTGGGCGGTGATTTGATTAGCGAGTGCTGGTTTGGATCGGAATTTTGTTTTGGTTTTCTTTTTGGCTGGAATTCTATGGGAGGAAAAGTGAGCTTCTGATTGTTTGGCACACGCATTGTAGGACCTGTAAATCTTGGTTTTTGGTGTGGAATTTGTCTTTTGGGGGAAATTTTAGGGAAAGATGAACCGTGCGGGCGAATTGTCGTTTCAAATTGGGGAATTTCGAGCCGGTAGGTTGTGAATGTGTGATCAGACTGCTCTGTTGTACATGCGTTCATCATTAAAGCTTGTTTAGCATTTGAATCTACTATTTGTTTTATGGAGAAATAGTTTAAGATCGAACAGGGCCAGGTTTAAGAAATCTGATGAAGAGAAGCCAATTTGGTGTATGCCCTAGTTTTGAATTGAGATAAATTTGAACAGAACTGCCTGTTATTAGTTCTCGAATGGTAGTTTCTCATTAATAAAAGTGTATCTCCATTTCTGAAAGCGTCTAATTAGTAATTCCTTCATGAAATCTTTGCATAATTAGATCATCCATTACTCAAGGAAAATATGCAATGGTGAGTTTTGTTCATTGAAGAATCAACTTCAATTTTGTGGCTCATTGTGATGGTGTATTAACTGTTGTTCTGTAAGTAAACAGGAAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCCCCCAAGAAGAAGAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAGAAAAAAATGACCAAGTGTTTAACTTCCCGAGGTTTCCTTCTTAGAACGGTTTGATTTTCCACAATTTTCATACATAGACTGCGTAGAAAGTTCTTACAGTTGTTTATTTCTTTTGTTTGCTGTCTCTTAACTCTTCAGGAATTGATCTTGATTGTGAGTTTCTAACTCATATTACATTACATGGGCTCTTTTCTCAAGGTTCCATTGGTTTCTTTTCTGCTTATTCTCCTCTTTTTGGTACACACCAGAAAGATTTCTGTTTCTCCATCTTTAAACAGCCTTAACTCAGTCCTTTTTACTGTTGGAGTCTTTTCTTTTTCTGCCTTTGAATCTTGCAATAAATGGTGGGGTTAGATTGTAGAGTCTCTATAGGGTTGAGTGATGGATTTGTGTAACTCTCTGTTTGGAAGATTAGAACACACTCTTTTGAACAGGAAGACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAGAGACATGTTCCTCAAGGGGCCATTACTACCACTTATTTGAATCACGTGGAACACTAGAGACCATTGAAGCACAGAAAAGCTTACCTTTTACTGAAGCAAGTCATCTTGTCCCCCCTTGTGTGTTTTTTGTGGGATTCATTGTTTTCAAGTCTCCATCAACATAATTTCGAATGCTCTGCTGATATAAAAACACACTGCTTTTAGACTTTTACTGTTTTGTCATGTTGGCTGCTAGCTCAGTTGCTTGCTTTACTATACTCCCGCAGGCAAGTAAGTCAGTGGCTTTTGATATTGGGCAATAAAGCACCCCATTTTTTGCTTTAACATTGCTTGTGGTGAAGGCACAGTGCCTGACTCGACTCTTTTGAAATTAGGTTATGCGCATTTGTTTTTGCTCCTATGGAAGATGGGGGACAAGTATTTGTTTTATGCATATGTTGTCATTGTCTTTACGCCCTATCAAGATTCAATTTGAGCATAGTTCAAATAGTTAAAAAGACATTATTGAACCGGAC

mRNA sequence

TTTTTTTGCTGACATTTCTCCGTCAACGCTGCACCGCCAATTCGATCCAATTTCGTATATTCGGGATCTTCTTGCTGGCCGATCTAGCCAGCTCTGAGTCGCAGTCATGGCGTCAGCCAATGGTAAGGAAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCCCCCAAGAAGAAGAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAGAAAAAAATGACCAAGTGTTTAACTTCCCGAGGTTTCCTTCTTAGAACGGTTTGATTTTCCACAATTTTCATACATAGACTGCGTAGAAAGTTCTTACAGTTGTTTATTTCTTTTGTTTGCTGTCTCTTAACTCTTCAGGAATTGATCTTGATTGTGAGTTTCTAACTCATATTACATTACATGGGCTCTTTTCTCAAGGTTCCATTGGTTTCTTTTCTGCTTATTCTCCTCTTTTTGGTACACACCAGAAAGATTTCTGTTTCTCCATCTTTAAACAGCCTTAACTCAGTCCTTTTTACTGTTGGAGTCTTTTCTTTTTCTGCCTTTGAATCTTGCAATAAATGGTGGGGTTAGATTGTAGAGTCTCTATAGGGTTGAGTGATGGATTTGTGTAACTCTCTGTTTGGAAGATTAGAACACACTCTTTTGAACAGGAAGACACTCATAAATTTGTCACAAGGAACATGTAGTCAACTAAGGAAGAGACATGTTCCTCAAGGGGCCATTACTACCACTTATTTGAATCACGTGGAACACTAGAGACCATTGAAGCACAGAAAAGCTTACCTTTTACTGAAGCAAGTCATCTTGTCCCCCCTTGTGTGTTTTTTGTGGGATTCATTGTTTTCAAGTCTCCATCAACATAATTTCGAATGCTCTGCTGATATAAAAACACACTGCTTTTAGACTTTTACTGTTTTGTCATGTTGGCTGCTAGCTCAGTTGCTTGCTTTACTATACTCCCGCAGGCAAGTAAGTCAGTGGCTTTTGATATTGGGCAATAAAGCACCCCATTTTTTGCTTTAACATTGCTTGTGGTGAAGGCACAGTGCCTGACTCGACTCTTTTGAAATTAGGTTATGCGCATTTGTTTTTGCTCCTATGGAAGATGGGGGACAAGTATTTGTTTTATGCATATGTTGTCATTGTCTTTACGCCCTATCAAGATTCAATTTGAGCATAGTTCAAATAGTTAAAAAGACATTATTGAACCGGAC

Coding sequence (CDS)

ATGGCGTCAGCCAATGGTAAGGAAAATGTGATGAACGATGTTGCAGCAAAAGGATTCAATCCAGGGCTAATGGTACTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCATAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCCCCCAAGAAGAAGAAGCCAGTTTCTAAAAAGAAAATGAAGAGGGAAAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Protein sequence

MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE

Homology

[Close]

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.1e-23
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 11 MNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLK 70
          +N+V AKG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPPKKKKP+SKKKMKRERLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 71 QGVSAPGE 79
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-20
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 4  ANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKK 63
          A+   NV+ +   KG NPG++VL++V   LL+F +GNYALY+YAQK LPP+KKKPVSKKK
Sbjct: 6  ADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKK 65

Query: 64 MKRERLKQGVSAPGE 79
          MKRE+LKQGVSAPGE
Sbjct: 66 MKREKLKQGVSAPGE 80

[Close]

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-20
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 16 AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSA 75
          AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  
Sbjct: 14 AKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPV 73

Query: 76 PGE 79
          PGE
Sbjct: 74 PGE 76

[Close]

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV
Sbjct: 12 VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGV 71

Query: 74 SAPGE 79
            PGE
Sbjct: 72 PVPGE 76

[Close]

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL
Match: A0A6J1GGV1 (DNA-binding protein S1FA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111454095 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL
Match: A0A6J1KWU8 (DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498311 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGK NVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL
Match: A0A0A0LAW3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGK NV+ND+ AKGFNP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL
Match: A0A1S3B680 (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MASANGKENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60
          MASANGK NV+NDV AKGFNP L+VLLLVGGLLL FL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRERLKQGVSAPGE 79
          KKKMKRERLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL
Match: A0A6J1GGX8 (DNA-binding protein S1FA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454095 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.5e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 8   ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRE 67
           ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRE
Sbjct: 54  ENVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRE 113

Query: 68  RLKQGVSAPGE 79
           RLKQGVSAPGE
Sbjct: 114 RLKQGVSAPGE 124

[Close]

BLAST of CmoCh06G003620 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 16 AKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGVSA 75
          AKG NPGL+VLL+VGG LL+FLI NY LY+YAQKNLPP+KKKPVSKKK+KRE+LKQGV  
Sbjct: 14 AKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPV 73

Query: 76 PGE 79
          PGE
Sbjct: 74 PGE 76

[Close]

BLAST of CmoCh06G003620 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          V AKG NPGL+VLL++GGLL+ FLI NY +Y+YAQKNLPP+KKKP+SKKK+KRE+LKQGV
Sbjct: 12 VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGV 71

Query: 74 SAPGE 79
            PGE
Sbjct: 72 PVPGE 76

[Close]

BLAST of CmoCh06G003620 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-21
Identity = 47/65 (72.31%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 14 VAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVSKKKMKRERLKQGV 73
          + +KG NPGL+VLL++GGLLL FL+GN+ LY YAQKNLPP+KKKPVSKKKMK+E++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]

BLAST of CmoCh06G003620 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 53.9 bits (128), Expect = 6.7e-08
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 46 YAQKNLPPKKKKPVSKKKMKRERLKQGVSAPGE 79
          +A KNLPP+KKKPVSKKK+KRE+LKQGV  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:

BLAST of CmoCh06G003620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	7.1e-23	77.94	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
Q7XLX6	1.9e-20	66.67	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
P42551	2.5e-20	79.37	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q42337	4.3e-20	73.85	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]
Q93VI0	4.3e-20	72.31	DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1	[more]

BLAST of CmoCh06G003620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGV1	2.3e-32	100.00	DNA-binding protein S1FA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1KWU8	1.5e-31	98.72	DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0LAW3	4.1e-29	91.03	DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1	[more]
A0A1S3B680	1.2e-28	91.03	DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1	[more]
A0A6J1GGX8	1.5e-28	100.00	DNA-binding protein S1FA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CmoCh06G003620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53370.1	1.8e-21	79.37	S1FA-like DNA-binding protein	[more]
AT2G37120.1	3.1e-21	73.85	S1FA-like DNA-binding protein	[more]
AT3G09735.1	3.1e-21	72.31	S1FA-like DNA-binding protein	[more]
AT3G53370.2	6.7e-08	78.79	S1FA-like DNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 14..78 e-value: 2.5E-39 score: 133.3
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 6..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 6..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G003620.1	CmoCh06G003620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding