CmoCh06G003170 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCATCCGCAGAAACTAGTAAGAATCATGAGCTCCTTCAACAACACCGCCAATTTTGATAATCTTCTCCTTCAAACTCTGATGGGCAGGCTCCAAATCCGGCCCCAAAGCAACAACAATCCCCTTCTCGCCCAATCTCTCGAAGACCTTCTCTTCGATGCAGCCAATCTCTCCGATGACGACAACGACGAGAACAAAACGCAGCTCGCCAAAGAGGAATCGATGCTCGAGAAAGAGATTATTCGCGTGATTCTCGGTGGGAATATCGATTCACTAAAACCTAATTCCGGCCAGGCTGTTACGATCGGCGAGCACCATATATGCGTGGGGTTTCATGAGGAGAAGGATTCGGATTATCGAGTTTGGGAATGGCATGGGCATATTATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATTTATGGGAATTACTTTGAAAGGCTTCAGGGGAAGGTCAATCGCGAGTTGAATAAAAAGGAGGCGGCGGAAGAAGAAGAAGAAGATGATGATGATGAAAAAGAGGAGGAGGTCGGCAAATTGGGTCTTCGGGAGTTGATTGACGGTGGTGATTCGAGTGGCGGTCGCATTCTGCATCGCAATGTCAATGCCAGTTCTCAAAGGTTTCGCATGATTTACTTACTGTTTTTCTGTTTCCTTATGAAATTATGTTCTTATGAAATTGAATTGAACACAAAAATTTAACCAAACAGTTTAAGGCATAATCAGGAAGGCTGTTTTCTGGAAGAAAAATTCATTGAAGTAGCCGCTTAGTTTTTACTCTCACATGCCGTTGGTTCATGTTTTTGCTTGATATATGGGTATGATTTTTATTTGTATGCCACTGAGTTATCCTCCCTTTGCCTAGTTCATGGAGTAAATCATTTCTCTCCCAAGTCTTGTAGTTAGTGTGTGTGTAGACATAGGTTCACTGCCTATCATTGGAGAAGACTTTTTTTTATTGATTAGGTAAAAGGACTTATGGATGGACTTAGACATGACTTTATCCCCTTTATTTTTTCGTTTGTTGTCGATGCCTTTGGGGACGGGAGAGTCCCGCAAGACTCTTTTGGAACAATCGGGTGACAGTCACTGTACAAATAGAATCGATGTCTCTATCTTAGAGTAAGCAAGGATAGAAACTTTTAAGGACATCGGGGCATGACTATTTATATTTGGTGGTTGATGGAACTTTAGAAGTGAATATATCGACTAGGAATATTGAAACCTTCGTAGTCACCGGAGTTCAGCTAGGGCATAAACGATAGTTCGACAGAGGAGGTGCTATTGTTGATGGAGTAGAAATTACCATGGCAGAAGCTCAGCCACATGAACCCTCCAATTGTGATGTCATGAATAAACCAGCAAAGGGAGTCTTCTAGTAGATATTGTCCTCTTTGAGCTTTCCCTCGAAGTTTTTAAAACATGTTAGCTAAGAAGAGGTTTCTACACCCTTATAAACAATGTTTCGTTTCCCTTTCCAACCGATGTGGTGTCTCACACTCCACTCTCCTTTGGGTTTTTCCTCTCCACTCGGTGTCCACCCTCCTTCGGGGCTCAACGTCCTCGTTGGCACATCGCTCGATGTTTGGCTCTGATACCATTTGTAACAGCCCAAACCCACCGCTAGCAGATACTGTTCTCTTTGGGCTTCCTCTTTCAGGCTTTCCCTCAAGGTTTTTAAAATGCGTCTGCTAGGGAGAGATTTTCAAACCCTTATAAAAAATGATTCGTTCTACTCTTCAACCGACGTGAGGTTAATGGGTAGATGTTCCTGCAAGCTAAAGTTTGGAACATGCTTTAGTTTCTAGAAAATTTATATAAGACAAAAGGAAGTCTCTTTGATGCAGTCGCTCATAATTGGTTGTGTGTGTTTTTGTTTCTGAGAGGCCATATGTGAAGGTTGAATTGATTGTTGCTTGGAGTTTTAAATGTTATTTCTTATCCTTAGTAATCTCTTGGGATTTCCTCCCCTCGTTTGGCTTGGATTTTAAGGATGACTCAAATCCCATTGCTGCTGGATAGATCACTTTTATCACTTGGTTGGATTTCCTTATAAGGGCGTGAAACCTCTCTCTAGCATATGTGTTTTAAAAACTGAGAGGAAGCCCGAAAGAGAAAGTCCAAAAAGGACCATATCTGCTAGTGATAGACTTAAGATTTTACAAATGGTATCAGAGTCAAACACCGGGCGGTGTGCCAGCGAGGATGTTGGCCCCCAAGGGGGGTGGATTATGAGATCCCAAAGAGGAACAAAACATTCCTTCTAAGAGTGTGAAAACCTCTCCCTAGCAGGCGCATTTTAAAAACCTTGAGGAGAAACCCGAAATGGGAAGTCCAAAGAGGACAACATCTGCTAGCGGTGGGCTTAGGCCTAGGCCGTTACTCTTTCATTGTTAACTTTGTTGAATTCTTATCTCTCTGACAATTTGGTTGAATTCTTATCAATGATAATCTACTTCTTGAAGATGATTAGTTTTCATTCTAACACGATGTTGCTCGTACACTTACTCCATTTCATTATATATTTTGCCATTAGGTTTTAGTCAGCTGAGTTGCGGTCTTTCGATCAGAGCTAGTTCGGATGCCGAAGAACGCTGATAACAACGCTGATAACGATCATCATTTTACAGATTGCACCTGGGTGTTTCTGCAGTCAGGACACCAAACTTTTTGTGTAAGTTGGACAGTAAATGAAAAGAGATGAATACATAGATTCAGTGACATTGGCTTTGTTTGATCGGTTTCTTCTCCATCCTTTTGAATAATTAATTACTTTTTGCTCTCTTCAGTTCACTTCTGTGTTGTGTATTTGTTCTTCATCTCTGC TCCATCCGCAGAAACTAGTAAGAATCATGAGCTCCTTCAACAACACCGCCAATTTTGATAATCTTCTCCTTCAAACTCTGATGGGCAGGCTCCAAATCCGGCCCCAAAGCAACAACAATCCCCTTCTCGCCCAATCTCTCGAAGACCTTCTCTTCGATGCAGCCAATCTCTCCGATGACGACAACGACGAGAACAAAACGCAGCTCGCCAAAGAGGAATCGATGCTCGAGAAAGAGATTATTCGCGTGATTCTCGGTGGGAATATCGATTCACTAAAACCTAATTCCGGCCAGGCTGTTACGATCGGCGAGCACCATATATGCGTGGGGTTTCATGAGGAGAAGGATTCGGATTATCGAGTTTGGGAATGGCATGGGCATATTATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATTTATGGGAATTACTTTGAAAGGCTTCAGGGGAAGGTCAATCGCGAGTTGAATAAAAAGGAGGCGGCGGAAGAAGAAGAAGAAGATGATGATGATGAAAAAGAGGAGGAGGTCGGCAAATTGGGTCTTCGGGAGTTGATTGACGGTGGTGATTCGAGTGGCGGTCGCATTCTGCATCGCAATGTCAATGCCAGTTCTCAAAGGTTTTAGTCAGCTGAGTTGCGGTCTTTCGATCAGAGCTAGTTCGGATGCCGAAGAACGCTGATAACAACGCTGATAACGATCATCATTTTACAGATTGCACCTGGGTGTTTCTGCAGTCAGGACACCAAACTTTTTGTGTAAGTTGGACAGTAAATGAAAAGAGATGAATACATAGATTCAGTGACATTGGCTTTGTTTGATCGGTTTCTTCTCCATCCTTTTGAATAATTAATTACTTTTTGCTCTCTTCAGTTCACTTCTGTGTTGTGTATTTGTTCTTCATCTCTGC ATGAGCTCCTTCAACAACACCGCCAATTTTGATAATCTTCTCCTTCAAACTCTGATGGGCAGGCTCCAAATCCGGCCCCAAAGCAACAACAATCCCCTTCTCGCCCAATCTCTCGAAGACCTTCTCTTCGATGCAGCCAATCTCTCCGATGACGACAACGACGAGAACAAAACGCAGCTCGCCAAAGAGGAATCGATGCTCGAGAAAGAGATTATTCGCGTGATTCTCGGTGGGAATATCGATTCACTAAAACCTAATTCCGGCCAGGCTGTTACGATCGGCGAGCACCATATATGCGTGGGGTTTCATGAGGAGAAGGATTCGGATTATCGAGTTTGGGAATGGCATGGGCATATTATGTTGTTTGATGAAGAAAATGGGTACTCGCCGGAGTATATTTATGGGAATTACTTTGAAAGGCTTCAGGGGAAGGTCAATCGCGAGTTGAATAAAAAGGAGGCGGCGGAAGAAGAAGAAGAAGATGATGATGATGAAAAAGAGGAGGAGGTCGGCAAATTGGGTCTTCGGGAGTTGATTGACGGTGGTGATTCGAGTGGCGGTCGCATTCTGCATCGCAATGTCAATGCCAGTTCTCAAAGGTTTTAG MSSFNNTANFDNLLLQTLMGRLQIRPQSNNNPLLAQSLEDLLFDAANLSDDDNDENKTQLAKEESMLEKEIIRVILGGNIDSLKPNSGQAVTIGEHHICVGFHEEKDSDYRVWEWHGHIMLFDEENGYSPEYIYGNYFERLQGKVNRELNKKEAAEEEEEDDDDEKEEEVGKLGLRELIDGGDSSGGRILHRNVNASSQRF Homology
BLAST of CmoCh06G003170 vs. ExPASy TrEMBL
Match: A0A6J1F855 (uncharacterized protein LOC111441746 OS=Cucurbita moschata OX=3662 GN=LOC111441746 PE=4 SV=1) HSP 1 Score: 394.4 bits (1012), Expect = 2.8e-106 Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
BLAST of CmoCh06G003170 vs. ExPASy TrEMBL
Match: A0A6J1KW97 (uncharacterized protein LOC111498761 OS=Cucurbita maxima OX=3661 GN=LOC111498761 PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101 Identity = 194/201 (96.52%), Postives = 197/201 (98.01%), Query Frame = 0
BLAST of CmoCh06G003170 vs. ExPASy TrEMBL
Match: A0A6J1CVB7 (uncharacterized protein LOC111015123 OS=Momordica charantia OX=3673 GN=LOC111015123 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95 Identity = 184/206 (89.32%), Postives = 194/206 (94.17%), Query Frame = 0
BLAST of CmoCh06G003170 vs. ExPASy TrEMBL
Match: A0A6J1J2Z9 (uncharacterized protein LOC111481390 OS=Cucurbita maxima OX=3661 GN=LOC111481390 PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 2.9e-87 Identity = 171/202 (84.65%), Postives = 187/202 (92.57%), Query Frame = 0
BLAST of CmoCh06G003170 vs. ExPASy TrEMBL
Match: A0A6J1F6Q3 (uncharacterized protein LOC111441374 OS=Cucurbita moschata OX=3662 GN=LOC111441374 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 4.2e-86 Identity = 173/205 (84.39%), Postives = 185/205 (90.24%), Query Frame = 0
BLAST of CmoCh06G003170 vs. TAIR 10
Match: AT3G53630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 243.4 bits (620), Expect = 1.5e-64 Identity = 131/203 (64.53%), Postives = 157/203 (77.34%), Query Frame = 0
BLAST of CmoCh06G003170 vs. TAIR 10
Match: AT4G18692.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 55.1 bits (131), Expect = 7.7e-08 Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 0
BLAST of CmoCh06G003170 vs. TAIR 10
Match: AT3G53342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07 Identity = 38/71 (53.52%), Postives = 45/71 (63.38%), Query Frame = 0
BLAST of CmoCh06G003170 vs. TAIR 10
Match: AT1G55710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53342.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 2.7e-05 Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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