CmoCh06G002630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nuclear transport factor 2 (NTF2) family protein
Location	Cmo_Chr06: 1340038 .. 1341346 (+)
RNA-Seq Expression	CmoCh06G002630
Synteny	CmoCh06G002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTATCTTCGTTGCTGACTCTCGGACCCTGAAACGTGATCTCTTTCGTGATTCTCAGCTGTTAAGAACCTTGTATGCTGCAGGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGTGAGTACTGCTTCGCTTCTTTGATCTAATATGAATTTATTTTGTTCTTCTCTTTCTACTCTTCATCATTGATGTTATTTCAAGTGCATTAGCTTTATCTTCTGTAATTGATTTATATGTGTTCTTCATTGTAAAGAATATTCTCTCGGTTTAATTTTTATTTTATAAGCGTTATCTGGATCTGGATGTCAATTTTGAAATAGTTCGGTGATGTTGTGATTTTCTAGGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTTATCATGTTCCTTCAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGTAAGTTTCATCGAATTTTTTCCATTTCCATGAGCTCTGATCTACTGCGTTTGTGAAATATGCATTTTCGAGCTAGTGCAATGTATCTCTGATATAAGAATGGATAGACTTATACAGATATACAAAGAATTTTGTATAATTGAACTTTGAATCTTGCTCCAATTTCGTCAGTAAATCAGCATTTTGGTAATATCTAGCGCAGGGCCCTGTAAACAATCTAGTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAATTCGAGCGGTGAAAGCATTACACTCGATGCAGAAGCCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAACGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

mRNA sequence

CATTTTATCTTCGTTGCTGACTCTCGGACCCTGAAACGTGATCTCTTTCGTGATTCTCAGCTGTTAAGAACCTTGTATGCTGCAGGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTTATCATGTTCCTTCAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACAATCTAGTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAATTCGAGCGGTGAAAGCATTACACTCGATGCAGAAGCCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAACGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

Coding sequence (CDS)

ATGCTGCAGGTTCCCTCGAGCATGGCGCTCCATACATCTAGTTTGTGCTGCAATGGTTATGTTACCTTTATTAGCAATCGGAAGAGCGTGCGTTGTTCCCAGAGTTGTGAGGTTTTTTATCATGTTCCTTCAGCTCTCCCTAAGCAATATGATATTGGCTTGGTTAAAGCATCTATCGGAGGCTACGGATTTGTTTCTCCTTCTATTCCTCGTTGTTTGGGTTCAACAATTGGAAATTTCAGGCCCTGTAAACAATCTAGTAGGATGCTATCATTTCGACCTTGTCAACTGAAAGCCGAGAATTCGAGCGGTGAAAGCATTACACTCGATGCAGAAGCCTTGAAGCAGGACCTGCAAAATGCCATTGCAGATGAAGACTACGCCAGAGCTGCAGAGATCAGAGATACCTTGAAAGCTCTTCAAGAGGACAGCAAAGCTTCAGTATTTGCAGCCAATGCTAAGTTCTACGAATCGTTTCGGAACGGGGATCTTGCAGCAATGCAAACTCTTTGGGCACGAGGAGACAGCGTCTGCTGCGTGCACCCAGGCATGAGGGGGATATCGGGATACGACAACGTTATAACCAGTTGGGAGTATGTATGGGCAAATTATGAGTTCCCACTGGAGATTCAGCTCAAGGATGTTGAAGTTCATGCTAGAGGGGATGTTGGATATGTTACATGTGTGGAATTGGTGAAGACGAAAGGTAGCAGTTGGGGGGGACAGTTTGTTACCAACGTGTTTGAGAGAATTAACGGTCAATGGTTCATCTGTATTCACCATGCCTCACCTATAGATTTGTAA

Protein sequence

MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHASPIDL

Homology

[Close]

BLAST of CmoCh06G002630 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-12
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL
Match: A0A6J1FUV2 (uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC111447066 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.4e-153
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60
           MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG
Sbjct: 1   MLQVPSSMALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIG 60

Query: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120
           GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN
Sbjct: 61  GYGFVSPSIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQN 120

Query: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180
           AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV
Sbjct: 121 AIADEDYARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCV 180

Query: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240
           HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG
Sbjct: 181 HPGMRGISGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWG 240

Query: 241 GQFVTNVFERINGQWFICIHHASPIDL 268
           GQFVTNVFERINGQWFICIHHASPIDL
Sbjct: 241 GQFVTNVFERINGQWFICIHHASPIDL 267

[Close]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL
Match: A0A6J1I6J4 (uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.4e-144
Identity = 249/260 (95.77%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67
           MALHTSSLCCNGYVTFISNRK+VRCSQSCEVF+HVPSALPKQYDIG VK S GGYGF+ P
Sbjct: 1   MALHTSSLCCNGYVTFISNRKNVRCSQSCEVFHHVPSALPKQYDIGFVKESTGGYGFLFP 60

Query: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127
           SIPRCLGSTIGNFRPCKQS+RMLSFRPCQLKAENSSGESITLDAE LKQDLQNAIADEDY
Sbjct: 61  SIPRCLGSTIGNFRPCKQSTRMLSFRPCQLKAENSSGESITLDAETLKQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
            GYDNV+TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 LGYDNVMTSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL
Match: A0A0A0LA11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.2e-126
Identity = 224/260 (86.15%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67
           MALHT +LCCN YVTFIS+RKSVRCSQS  VF+HVPSA PKQ +I LV +S GG GF+ P
Sbjct: 1   MALHTFNLCCNDYVTFISSRKSVRCSQSFSVFHHVPSAFPKQCEIRLVNSSSGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127
           S  R +GS  GNFRPCKQ+SR LSFRPCQLKAENSSGESITLDAE L+QDLQNAIADEDY
Sbjct: 61  SNFRHVGSRNGNFRPCKQASRKLSFRPCQLKAENSSGESITLDAETLEQDLQNAIADEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDIQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL
Match: A0A5A7TRW4 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004880 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.2e-122
Identity = 221/260 (85.00%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67
           MAL TS+LCCN YVTFISN KSVRCSQS  VF+HVPSALPKQ +I LVK+S GG GF+ P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127
           +  R + S  GNFRPCKQ+SR LSF P QLKAENSSGESITLDAE L+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL
Match: A0A1S3B5S8 (uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=4 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 2.2e-122
Identity = 221/260 (85.00%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 8   MALHTSSLCCNGYVTFISNRKSVRCSQSCEVFYHVPSALPKQYDIGLVKASIGGYGFVSP 67
           MAL TS+LCCN YVTFISN KSVRCSQS  VF+HVPSALPKQ +I LVK+S GG GF+ P
Sbjct: 1   MALRTSNLCCNDYVTFISNWKSVRCSQSFSVFHHVPSALPKQCEIRLVKSSNGGSGFLLP 60

Query: 68  SIPRCLGSTIGNFRPCKQSSRMLSFRPCQLKAENSSGESITLDAEALKQDLQNAIADEDY 127
           +  R + S  GNFRPCKQ+SR LSF P QLKAENSSGESITLDAE L+QDLQNAIA+EDY
Sbjct: 61  TNLRHVVSRDGNFRPCKQASRKLSFGPYQLKAENSSGESITLDAETLEQDLQNAIANEDY 120

Query: 128 ARAAEIRDTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGI 187
           ARAAEIRDTLKALQEDSK  V  ANAKFYESFR GDLAAMQTLWARG+SVCCVHPGMRGI
Sbjct: 121 ARAAEIRDTLKALQEDSKTLVLTANAKFYESFRTGDLAAMQTLWARGNSVCCVHPGMRGI 180

Query: 188 SGYDNVITSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 247
           SGYD+VITSWEYVWANYEFPLEIQLKD++VHARGDVGYVTCVELVKTKGSSWGGQFVTNV
Sbjct: 181 SGYDDVITSWEYVWANYEFPLEIQLKDMQVHARGDVGYVTCVELVKTKGSSWGGQFVTNV 240

Query: 248 FERINGQWFICIHHASPIDL 268
           FERINGQWFICIHHASPIDL
Sbjct: 241 FERINGQWFICIHHASPIDL 260

[Close]

BLAST of CmoCh06G002630 vs. TAIR 10
Match: AT3G09250.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 262.3 bits (669), Expect = 4.2e-70
Identity = 123/194 (63.40%), Postives = 154/194 (79.38%), Query Frame = 0


Query: 79  NFRPCKQSSRMLSFRPCQLKAENSSG----ESITLDAEALKQDLQNAIADEDYARAAEIR 138
           N  PC +       RPC++K E ++     ESI++D   LKQDL+ A+ +E+Y  AA+IR
Sbjct: 57  NKEPCSR------LRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIR 116

Query: 139 DTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVI 198
           D LK LQED+KASV +AN++FY+SFRNGDLAAMQ+LW++  + CCVHPG +GI+GYD V+
Sbjct: 117 DKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVM 176

Query: 199 TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKG-SSWGGQFVTNVFERING 258
            SWE VW NYEFPL I+LKDVEVH RG+VGYVTC+E VKTKG SSWG QFV+NVFERI+G
Sbjct: 177 ESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDG 236

Query: 259 QWFICIHHASPIDL 268
           QWFICIHHASP+D+
Sbjct: 237 QWFICIHHASPVDI 244

[Close]

BLAST of CmoCh06G002630 vs. TAIR 10
Match: AT3G09250.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 236.5 bits (602), Expect = 2.5e-62
Identity = 113/182 (62.09%), Postives = 142/182 (78.02%), Query Frame = 0


Query: 79  NFRPCKQSSRMLSFRPCQLKAENSSG----ESITLDAEALKQDLQNAIADEDYARAAEIR 138
           N  PC +       RPC++K E ++     ESI++D   LKQDL+ A+ +E+Y  AA+IR
Sbjct: 43  NKEPCSR------LRPCRVKREENNQTADVESISMDENTLKQDLETAVQEENYVEAAKIR 102

Query: 139 DTLKALQEDSKASVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVI 198
           D LK LQED+KASV +AN++FY+SFRNGDLAAMQ+LW++  + CCVHPG +GI+GYD V+
Sbjct: 103 DKLKELQEDNKASVLSANSRFYQSFRNGDLAAMQSLWSKSGNPCCVHPGAKGITGYDYVM 162

Query: 199 TSWEYVWANYEFPLEIQLKDVEVHARGDVGYVTCVELVKTKG-SSWGGQFVTNVFERING 256
            SWE VW NYEFPL I+LKDVEVH RG+VGYVTC+E VKTKG SSWG QFV+NVFERI+G
Sbjct: 163 ESWELVWMNYEFPLLIELKDVEVHVRGEVGYVTCMEFVKTKGSSSWGAQFVSNVFERIDG 218

[Close]

BLAST of CmoCh06G002630 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CmoCh06G002630 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

[Close]

BLAST of CmoCh06G002630 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 9.6e-14
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 0


Query: 147 SVFAANAKFYESFRNGDLAAMQTLWARGDSVCCVHPGMRGISGYDNVITSWEYVWANYEF 206
           ++ + N +F+   R+  L AM  LW   D V C+H      SGY+ VI SW+  + N+E 
Sbjct: 107 AIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNEVIQSWQLCF-NWEQ 166

Query: 207 PLEIQLKDVEVHARGDVGYVTCVELVKTKGSSWGGQFVTNVFERINGQWFICIHHAS 264
             + Q+  V      D+ +VT    +   G   G   +TNVFE  NG+W +  HH+S
Sbjct: 167 GFDFQVHTVRTRILTDMAWVTMKAYLNVDG---GPFLITNVFEFHNGRWHMVHHHSS 219

The following BLAST results are available for this feature:

BLAST of CmoCh06G002630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV9	1.3e-12	33.33	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]

BLAST of CmoCh06G002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUV2	2.4e-153	100.00	uncharacterized protein LOC111447066 OS=Cucurbita moschata OX=3662 GN=LOC1114470...	[more]
A0A6J1I6J4	3.4e-144	95.77	uncharacterized protein LOC111470086 OS=Cucurbita maxima OX=3661 GN=LOC111470086...	[more]
A0A0A0LA11	3.2e-126	86.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733200 PE=4 SV=1	[more]
A0A5A7TRW4	2.2e-122	85.00	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G...	[more]
A0A1S3B5S8	2.2e-122	85.00	uncharacterized protein LOC103486341 OS=Cucumis melo OX=3656 GN=LOC103486341 PE=...	[more]

BLAST of CmoCh06G002630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09250.1	4.2e-70	63.40	Nuclear transport factor 2 (NTF2) family protein	[more]
AT3G09250.2	2.5e-62	62.09	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.1	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.2	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.3	9.6e-14	33.33	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 150..264 e-value: 7.2E-23 score: 81.2
IPR001943	UVR domain	PFAM	PF02151	UVR	coord: 112..142 e-value: 8.1E-6 score: 25.4
None	No IPR available	GENE3D	3.10.450.50		coord: 137..266 e-value: 2.3E-41 score: 143.1
None	No IPR available	PANTHER	PTHR34957	NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN	coord: 30..266
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 143..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G002630.1	CmoCh06G002630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding