CmoCh06G002600 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G002600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPAR1 protein
LocationCmo_Chr06: 1327361 .. 1328470 (+)
RNA-Seq ExpressionCmoCh06G002600
SyntenyCmoCh06G002600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCCCCTTTTCTCTCAACTTCTCTTCATATATTACTCCACAAACACCTCTTCCATCTCTAATCCACCACCAATTTCCTCTCGTTTCTTTCAATTCCTCGCCCCATTTTCTTCTTACCCATAAAACAGCTTCCCATGGCTATCTCCAACAAATTGCCTTGCCTTCTCTTCCTCTCCTCCCTTTTCGTCTCTGCCGCGCTTGGTACGTAGCCATCTAACCCACTTTGTATATGGGTTTGGTTTGGTTTGGTTTGACGATGTTTGTTGTGGTGCAGGGGAGCTTGTTTGCGAGGAATTGTCGGTGGATGTGTGCGCATTTTCAATTGCTTCATCGGGGAAGAGATGTTTGTTGGAGACGGCAGAGACGAAAGATGGGAAGATTGAATATCAATGCAGAACGTCTGAGGTGATAGTGGAATGGATGGCGGAGTTCATAGAGACGGATATATGCATCAAGGCTTGTGGGGTGGATCGGAACTCGGTCGGAATTGCCTCCGATGCACTCCTCGAGCCACACTTCACGGCCAAGCTTTGCTCCCCTGCCTGCTACCAGAAATGCCCCAACATTGTTGACCTTTACTTCAACATGGCCGCAGGAGAGGGTAACCCATAACCCAAAATTCCCAATCTCTTAACTTCACAACGAAATTCCCAATCTAATTGCCTATTCAATTCATGTCATTGCAGGAGTGTTCTTGCCCGACCTTTGCATCAAACAACGCACAAACCCCCATCGTGCCATGGCAGAGCTGCTGAGCTCTGGTGCTGCTGCTGGCGGTCCAGTGTCATCGGTGAATACCCCTGGATTCTTCCCCACAGCTGATGCCCCAGCTCCGATGTGAAGACGACGTTGATTTAGATTTATTGTTTGGTTGGTGATTGATTGATTGATTGTATCTTCATTGTGATTTTCGTACAACAGCTGAGAGGAAATAAATAGAAAATAGTAATGAATGGCTGTGAGGAAAAGGATGGGTGATTTTCTTTGGATTTCACATTTACTTTCCATACCATTATCTTGTATACCTCTTTTTCCTTTGTTCTGCTTTTCAATATTCCCACACACACACACTTAGTTTTACTCTATATCTCTCCTTACTTAATAAAAG

mRNA sequence

TCTCTCCCCTTTTCTCTCAACTTCTCTTCATATATTACTCCACAAACACCTCTTCCATCTCTAATCCACCACCAATTTCCTCTCGTTTCTTTCAATTCCTCGCCCCATTTTCTTCTTACCCATAAAACAGCTTCCCATGGCTATCTCCAACAAATTGCCTTGCCTTCTCTTCCTCTCCTCCCTTTTCGTCTCTGCCGCGCTTGGGGAGCTTGTTTGCGAGGAATTGTCGGTGGATGTGTGCGCATTTTCAATTGCTTCATCGGGGAAGAGATGTTTGTTGGAGACGGCAGAGACGAAAGATGGGAAGATTGAATATCAATGCAGAACGTCTGAGGTGATAGTGGAATGGATGGCGGAGTTCATAGAGACGGATATATGCATCAAGGCTTGTGGGGTGGATCGGAACTCGGTCGGAATTGCCTCCGATGCACTCCTCGAGCCACACTTCACGGCCAAGCTTTGCTCCCCTGCCTGCTACCAGAAATGCCCCAACATTGTTGACCTTTACTTCAACATGGCCGCAGGAGAGGGAGTGTTCTTGCCCGACCTTTGCATCAAACAACGCACAAACCCCCATCGTGCCATGGCAGAGCTGCTGAGCTCTGGTGCTGCTGCTGGCGGTCCAGTGTCATCGGTGAATACCCCTGGATTCTTCCCCACAGCTGATGCCCCAGCTCCGATGTGAAGACGACGTTGATTTAGATTTATTGTTTGGTTGGTGATTGATTGATTGATTGTATCTTCATTGTGATTTTCGTACAACAGCTGAGAGGAAATAAATAGAAAATAGTAATGAATGGCTGTGAGGAAAAGGATGGGTGATTTTCTTTGGATTTCACATTTACTTTCCATACCATTATCTTGTATACCTCTTTTTCCTTTGTTCTGCTTTTCAATATTCCCACACACACACACTTAGTTTTACTCTATATCTCTCCTTACTTAATAAAAG

Coding sequence (CDS)

ATGGCTATCTCCAACAAATTGCCTTGCCTTCTCTTCCTCTCCTCCCTTTTCGTCTCTGCCGCGCTTGGGGAGCTTGTTTGCGAGGAATTGTCGGTGGATGTGTGCGCATTTTCAATTGCTTCATCGGGGAAGAGATGTTTGTTGGAGACGGCAGAGACGAAAGATGGGAAGATTGAATATCAATGCAGAACGTCTGAGGTGATAGTGGAATGGATGGCGGAGTTCATAGAGACGGATATATGCATCAAGGCTTGTGGGGTGGATCGGAACTCGGTCGGAATTGCCTCCGATGCACTCCTCGAGCCACACTTCACGGCCAAGCTTTGCTCCCCTGCCTGCTACCAGAAATGCCCCAACATTGTTGACCTTTACTTCAACATGGCCGCAGGAGAGGGAGTGTTCTTGCCCGACCTTTGCATCAAACAACGCACAAACCCCCATCGTGCCATGGCAGAGCTGCTGAGCTCTGGTGCTGCTGCTGGCGGTCCAGTGTCATCGGTGAATACCCCTGGATTCTTCCCCACAGCTGATGCCCCAGCTCCGATGTGA

Protein sequence

MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEYQCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNIVDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPAPM
Homology
BLAST of CmoCh06G002600 vs. ExPASy TrEMBL
Match: A0A6J1F4P2 (uncharacterized protein LOC111442059 OS=Cucurbita moschata OX=3662 GN=LOC111442059 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.3e-98
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60
           MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY
Sbjct: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60

Query: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120
           QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI
Sbjct: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA 180
           VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA
Sbjct: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA 180

Query: 181 PM 183
           PM
Sbjct: 181 PM 182

BLAST of CmoCh06G002600 vs. ExPASy TrEMBL
Match: A0A6J1I6J9 (uncharacterized protein LOC111470091 OS=Cucurbita maxima OX=3661 GN=LOC111470091 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.0e-91
Identity = 174/186 (93.55%), Postives = 176/186 (94.62%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60
           MAISNK PCLLFLSSLFVSAALG+LVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY
Sbjct: 1   MAISNKFPCLLFLSSLFVSAALGDLVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60

Query: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120
           QCRTSEVIVEWMAEFIETD CIKACGVDRNSVGIASDALLEP FTAKLCSPACYQKCPNI
Sbjct: 61  QCRTSEVIVEWMAEFIETDKCIKACGVDRNSVGIASDALLEPLFTAKLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGA----AAGGPVSSVNTPGFFPTA 180
           VDLYFNMAAGEGVFLPDLC +QRTNPHRAMAELLSS A    AAGGPVSS NTPGFFPTA
Sbjct: 121 VDLYFNMAAGEGVFLPDLCTRQRTNPHRAMAELLSSSAAAASAAGGPVSSENTPGFFPTA 180

Query: 181 DAPAPM 183
           DAPAPM
Sbjct: 181 DAPAPM 186

BLAST of CmoCh06G002600 vs. ExPASy TrEMBL
Match: A0A6J1F1D5 (uncharacterized protein LOC111441487 OS=Cucurbita moschata OX=3662 GN=LOC111441487 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.8e-81
Identity = 154/182 (84.62%), Postives = 165/182 (90.66%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60
           MAISNK+  LLF+SS+FVSAALGELVCEELSVDVCAFSIASSGKRCLLET+E KDGK+EY
Sbjct: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60

Query: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120
           QCRTSEV+VEWM+ +IETD CI ACG+DRNSVGIASDALL+P FTA LCSPACYQKCPNI
Sbjct: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA 180
           VDLYFNMAAGEGVFLPDLC +QRTNPHRAM ELLSSGAAA GPVSS    G FP ADAPA
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAA-GPVSSAAATGVFPAADAPA 180

Query: 181 PM 183
           PM
Sbjct: 181 PM 181

BLAST of CmoCh06G002600 vs. ExPASy TrEMBL
Match: A0A6J1CV35 (uncharacterized protein LOC111015053 OS=Momordica charantia OX=3673 GN=LOC111015053 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 153/182 (84.07%), Postives = 165/182 (90.66%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60
           MA SNK   LLF+SSLF+SAA+GELVCEELSVDVCAFSIASSGKRCLLET+E KDGK EY
Sbjct: 1   MAFSNKFAALLFVSSLFLSAAVGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKFEY 60

Query: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120
           QCRTSEV+VEWMAE+IE+D CI ACG+DRNSVGIASDALLEPHFTAKLCSP CYQKCPNI
Sbjct: 61  QCRTSEVMVEWMAEYIESDHCINACGLDRNSVGIASDALLEPHFTAKLCSPPCYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA 180
           VDLYFNMAAGEGVFLPDLC +QRT+PHRAMAELLSSGAAA GP+SS    G  PTA+APA
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTSPHRAMAELLSSGAAA-GPMSSEAATGILPTAEAPA 180

Query: 181 PM 183
           PM
Sbjct: 181 PM 181

BLAST of CmoCh06G002600 vs. ExPASy TrEMBL
Match: A0A6J1IZF1 (uncharacterized protein LOC111482073 OS=Cucurbita maxima OX=3661 GN=LOC111482073 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.1e-80
Identity = 153/182 (84.07%), Postives = 163/182 (89.56%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEY 60
           MAISNK+  LLF+SS FVSAALGELVCEELSVDVCAFSIASSGKRC LET+E KDGK+EY
Sbjct: 1   MAISNKMALLLFISSAFVSAALGELVCEELSVDVCAFSIASSGKRCSLETSENKDGKLEY 60

Query: 61  QCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNI 120
           QCRTSEV+VEWM+ +IETD CI ACG+DRNSVGIASDALL+P FTA LCSPACYQKCPNI
Sbjct: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTANLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTADAPA 180
           VDLYFNMAAGEGVFLPDLC +QRTNPHRAM ELLSSGAAA GPVSS    G FP ADAPA
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAA-GPVSSAAATGVFPAADAPA 180

Query: 181 PM 183
           PM
Sbjct: 181 PM 181

BLAST of CmoCh06G002600 vs. TAIR 10
Match: AT3G54040.1 (PAR1 protein )

HSP 1 Score: 188.0 bits (476), Expect = 6.9e-48
Identity = 107/187 (57.22%), Postives = 131/187 (70.05%), Query Frame = 0

Query: 4   SNKLPCLLFLSSLFVSAALGE-LVCEELSVDVCAFSIASSGKRCLLETAETKDGKIEYQC 63
           S KLP  L LSSL + AA+GE +VCE L  ++C+FSI++SGKRC+LETA       E+ C
Sbjct: 5   SLKLPIFLILSSL-LHAAIGENIVCENLPTNMCSFSISASGKRCILETANVAG---EFTC 64

Query: 64  RTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPNIVD 123
           RTS V VE +   +ETD C+ ACGVDR +VGI+SD+L+E  F AKLCS AC   CPNI+D
Sbjct: 65  RTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNILD 124

Query: 124 LYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAAAGGPVSSVNTPGFFPTAD----- 183
           LYFN+AAGEG FLPDLC  QR NP R+M E +SSGAA  GPVS +  PG  PT++     
Sbjct: 125 LYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSGAAP-GPVSEI-APG--PTSEEVSSP 183

BLAST of CmoCh06G002600 vs. TAIR 10
Match: AT5G52390.1 (PAR1 protein )

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-40
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 1   MAISNKLPCLLFLSSLFVSAALGELV-CEELSVDVCAFSIASSGKRCLLETAETKDGKIE 60
           MA+       + L +++     G+ V CE L  + CAF+++S+GKRC+LE +  + G   
Sbjct: 1   MALKTVFVAFMILLAIYSQTTFGDDVKCENLDENTCAFAVSSTGKRCVLEKSMKRSGIEV 60

Query: 61  YQCRTSEVIVEWMAEFIETDICIKACGVDRNSVGIASDALLEPHFTAKLCSPACYQKCPN 120
           Y CR+SE+    +   IE+D CIKACG+DR ++GI+SDALLE  FT KLCS  C  +CPN
Sbjct: 61  YTCRSSEIEANKVTNIIESDECIKACGLDRKALGISSDALLESQFTHKLCSVKCLNQCPN 120

Query: 121 IVDLYFNMAAGEGVFLPDLCIKQRTNPHRAMAELLSSGAA 160
           +VDLYFN+AAGEGV+LP LC  Q     RAM+E+ SSG A
Sbjct: 121 VVDLYFNLAAGEGVYLPKLCESQEGKSRRAMSEIRSSGIA 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F4P23.3e-98100.00uncharacterized protein LOC111442059 OS=Cucurbita moschata OX=3662 GN=LOC1114420... [more]
A0A6J1I6J93.0e-9193.55uncharacterized protein LOC111470091 OS=Cucurbita maxima OX=3661 GN=LOC111470091... [more]
A0A6J1F1D54.8e-8184.62uncharacterized protein LOC111441487 OS=Cucurbita moschata OX=3662 GN=LOC1114414... [more]
A0A6J1CV352.4e-8084.07uncharacterized protein LOC111015053 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1IZF14.1e-8084.07uncharacterized protein LOC111482073 OS=Cucurbita maxima OX=3661 GN=LOC111482073... [more]
Match NameE-valueIdentityDescription
AT3G54040.16.9e-4857.22PAR1 protein [more]
AT5G52390.19.0e-4048.75PAR1 protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009489PAR1PFAMPF06521PAR1coord: 25..181
e-value: 1.3E-70
score: 236.1
IPR009489PAR1PANTHERPTHR33649PAR1 PROTEINcoord: 6..168
NoneNo IPR availablePANTHERPTHR33649:SF4PAR1 PROTEINcoord: 6..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G002600.1CmoCh06G002600.1mRNA