CmoCh06G002550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G002550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionLectin_legB domain-containing protein
LocationCmo_Chr06: 1303625 .. 1304232 (-)
RNA-Seq ExpressionCmoCh06G002550
SyntenyCmoCh06G002550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAATCCAAAGATTTTTTCAGAACATGATTGATCTGTAATCTTCAAAGAACACGAACAGGAAGCTAAAATCAAGAGCAAACAAACATATTACCAGTTGACGATCGATTACATACAACGAATGAAACTATGAAATGCTTCAACAATACACAATAATTTACAGGAATCTCTGTCACTTTCTATACTGAAATCAGCCAGAGAGAAGCTTAATGATGATGGTGATGATGTTGAAAAGAATGAGTGGAAGTCTCAAGAACTGGCAAGCATGGATGAGTCCTATTACCTGCGCTTTGAGCGAGTTTCTTCCTTCTCTCGGCATATCCGCCAACGTCCATCCTCTCCGAGCAAGGAATCGATCCTCGTTTAGAATTGCGAAGGCGTTTGCGAACAGCAGAAGCCCTTCCAAAAAAGTCCAGAATAGCATATCTGCGTGTTCGAAAACGGTGAAGACTTTGAATCTTTACGGATTTGGAATCCAGAAATGAAATCGAAACTGAAGATGATCGAATAGAGCTTCTTGTTTTTCTCACCTTTCGTTCGACGATTTTCTGAGCAAGCGATTGGTGTTTGTTTCAGGTCTTGAGAATAGAATGGAATTGGAGGCGATGA

mRNA sequence

TTTAATCCAAAGATTTTTTCAGAACATGATTGATCTGTAATCTTCAAAGAACACGAACAGGAAGCTAAAATCAAGAGCAAACAAACATATTACCAGTTGACGATCGATTACATACAACGAATGAAACTATGAAATGCTTCAACAATACACAATAATTTACAGGAATCTCTGTCACTTTCTATACTGAAATCAGCCAGAGAGAAGCTTAATGATGATGGTGATGATGTTGAAAAGAATGAGTGGAAGTCTCAAGAACTGGCAAGCATGGATGAGTCCTATTACCTGCGCTTTGAGCGAGTTTCTTCCTTCTCTCGGCATATCCGCCAACGTCCATCCTCTCCGAGCAAGGAATCGATCCTCGTTTAGAATTGCGAAGGCGTTTGCGAACAGCAGAAGCCCTTCCAAAAAAGTCCAGAATAGCATATCTGCGTGTTCGAAAACGGTCTTGAGAATAGAATGGAATTGGAGGCGATGA

Coding sequence (CDS)

ATGATGATGGTGATGATGTTGAAAAGAATGAGTGGAAGTCTCAAGAACTGGCAAGCATGGATGAGTCCTATTACCTGCGCTTTGAGCGAGTTTCTTCCTTCTCTCGGCATATCCGCCAACGTCCATCCTCTCCGAGCAAGGAATCGATCCTCGTTTAGAATTGCGAAGGCGTTTGCGAACAGCAGAAGCCCTTCCAAAAAAGTCCAGAATAGCATATCTGCGTGTTCGAAAACGGTCTTGAGAATAGAATGGAATTGGAGGCGATGA

Protein sequence

MMMVMMLKRMSGSLKNWQAWMSPITCALSEFLPSLGISANVHPLRARNRSSFRIAKAFANSRSPSKKVQNSISACSKTVLRIEWNWRR
Homology
[Close]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match: A0A2P5AKM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322920 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   MVMMLKRMSGSLKNWQAWMSPITCALSEFLPSLGISANVHPLRARNRSSFRIAKAFANSR 62
           ++ +LK M G+LKNWQA +SP+ C  S FL     S  VHPL ARN SSFRIA AFANSR
Sbjct: 39  IITILKSMRGNLKNWQACISPMICPFSVFLLPPWSSNKVHPLGARNLSSFRIANAFANSR 98

Query: 63  SPSKKVQNSI 73
           SPS+KVQ  I
Sbjct: 99  SPSRKVQKPI 108

[Close]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match: A0A2P5EXB7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_140130 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 3   MVMMLKRMSGSLKNWQAWMSPITCALSEFLPSLGISANVHPLRARNRSSFRIAKAFANSR 62
           ++ +LK M G+LKNWQA +SP+ C  S FL     S  VHPL ARN SSFRIAKAFANSR
Sbjct: 38  IITILKSMRGNLKNWQACISPMICPFSVFLLPPWSSNKVHPLGARNLSSFRIAKAFANSR 97

Query: 63  SPSKKVQNSI 73
            PS+KVQ  I
Sbjct: 98  RPSRKVQKPI 107

[Close]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match: A0A0D3C4W5 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 3   MVMMLKRMSGSLKNWQAWMSPITCALSEF-LPSLGISANVHPLRARNRSSFRIAKAFANS 62
           M + LK M GSL  WQAWM P    L EF LP    SA++HPL A+ RSS RIA AFANS
Sbjct: 221 MTIKLKSMRGSLMYWQAWMRPTIWPLREFLLPVWCSSASIHPLGAKKRSSLRIASAFANS 280

Query: 63  RSPSKKVQN 71
            +PS  VQN
Sbjct: 281 SNPSISVQN 289

[Close]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match: D7LUQ1 (Lectin_legB domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_348499 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 38/74 (51.35%), Postives = 42/74 (56.76%), Query Frame = 0 

Query: 3   MVMMLKRMSGSLKNWQAWMSPITCALSEF-LPSLGISANVHPLRARNRSSFRIAKAFANS 62
           M  +L  M GSL  WQAW+ P+   L EF LP    S +VHPL  R RSS RIA AFA S
Sbjct: 361 MTAVLMSMRGSLMYWQAWIRPMIWPLGEFLLPVWWSSPSVHPLGTRKRSSLRIASAFAKS 420

Query: 63  RSPSKKVQNSISAC 76
           R P   VQ  I  C
Sbjct: 421 RRPFNNVQKPIVLC 434

[Close]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match: A0A7J7D808 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00499 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-06
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 0 

Query: 3  MVMMLKRMSGSLKNWQAWMSPITCALSEFLPSLGISANVHPLRARNRSSFRIAKAFANSR 62
          M M+ K + G+L+ W A+M PI+C  ++F+     S  + P  ARNRSSF IA AFA+SR
Sbjct: 1  MKMLFKIIRGTLRYWVAYMRPISCPFNDFVLPPENSWKLQPFGARNRSSFNIANAFASSR 60

Query: 63 SPSKKVQNSISACSKTVL 81
          +PS  V   IS   K  L
Sbjct: 61 NPSSSVHKPISCKVKVRL 78

The following BLAST results are available for this feature:
BLAST of CmoCh06G002550 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5AKM31.5e-1161.43Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_322920 PE... [more]
A0A2P5EXB71.5e-1161.43Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_140130 PE=4 SV... [more]
A0A0D3C4W51.5e-0857.97Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1[more]
D7LUQ14.9e-0751.35Lectin_legB domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=819... [more]
A0A7J7D8083.2e-0644.87Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW09G00499 ... [more]
BLAST of CmoCh06G002550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G002550.1CmoCh06G002550.1mRNA