CmoCh06G002340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G002340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionjosephin-like protein
LocationCmo_Chr06: 1247114 .. 1247482 (-)
RNA-Seq ExpressionCmoCh06G002340
SyntenyCmoCh06G002340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGGAAATCCAGCAAACGGGTCAGCTTCAGTCCTGATGTGAATGATAACCCAACAGTCGTGCTCAAACACGGCGGCGGTGACGACGGCGCTGGAACTTTGAGCTTCGGCCTGAGCAGAGACTCAAGGCACTTGCCGGTGGGATTTCTACAGAGTTTCAAGGCCAGAGTAAGTGAAGCCATTCGCTTTGTATCCACCAAAAAATCTTCACGAAAGGTTTCTTCAGCCGCCACTTTTACAAGGTCAAGATCGGTTTCGGATTCCATGGAGTCGCACCGAGCTGAAGCAATCGAAGATTGCATCGAATTCTTAAACCACTCTTCATCTTTGTCCAGATTAAACTCAGTCTCTGGAAGTACTTACTGA

mRNA sequence

ATGACAAGGAAATCCAGCAAACGGGTCAGCTTCAGTCCTGATGTGAATGATAACCCAACAGTCGTGCTCAAACACGGCGGCGGTGACGACGGCGCTGGAACTTTGAGCTTCGGCCTGAGCAGAGACTCAAGGCACTTGCCGGTGGGATTTCTACAGAGTTTCAAGGCCAGAGTAAGTGAAGCCATTCGCTTTGTATCCACCAAAAAATCTTCACGAAAGGTTTCTTCAGCCGCCACTTTTACAAGGTCAAGATCGGTTTCGGATTCCATGGAGTCGCACCGAGCTGAAGCAATCGAAGATTGCATCGAATTCTTAAACCACTCTTCATCTTTGTCCAGATTAAACTCAGTCTCTGGAAGTACTTACTGA

Coding sequence (CDS)

ATGACAAGGAAATCCAGCAAACGGGTCAGCTTCAGTCCTGATGTGAATGATAACCCAACAGTCGTGCTCAAACACGGCGGCGGTGACGACGGCGCTGGAACTTTGAGCTTCGGCCTGAGCAGAGACTCAAGGCACTTGCCGGTGGGATTTCTACAGAGTTTCAAGGCCAGAGTAAGTGAAGCCATTCGCTTTGTATCCACCAAAAAATCTTCACGAAAGGTTTCTTCAGCCGCCACTTTTACAAGGTCAAGATCGGTTTCGGATTCCATGGAGTCGCACCGAGCTGAAGCAATCGAAGATTGCATCGAATTCTTAAACCACTCTTCATCTTTGTCCAGATTAAACTCAGTCTCTGGAAGTACTTACTGA

Protein sequence

MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVSEAIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGSTY
Homology
BLAST of CmoCh06G002340 vs. ExPASy TrEMBL
Match: A0A6J1H9Z7 (uncharacterized protein LOC111461879 OS=Cucurbita moschata OX=3662 GN=LOC111461879 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.2e-57
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVSE 60
           MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVSE
Sbjct: 1   MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVSE 60

Query: 61  AIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS 120
           AIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS
Sbjct: 61  AIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS 120

Query: 121 TY 123
           TY
Sbjct: 121 TY 122

BLAST of CmoCh06G002340 vs. ExPASy TrEMBL
Match: A0A6J1I1K7 (uncharacterized protein LOC111470059 OS=Cucurbita maxima OX=3661 GN=LOC111470059 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVSE 60
           MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAG LSFGLSRD+RHLPVGFLQSFKARVSE
Sbjct: 1   MTRKSSKRVSFSPDVNDNPTVVLKHGGGDDGAGILSFGLSRDTRHLPVGFLQSFKARVSE 60

Query: 61  AIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS 120
           AIRFVST+KSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS
Sbjct: 61  AIRFVSTRKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSGS 120

Query: 121 TY 123
           TY
Sbjct: 121 TY 122

BLAST of CmoCh06G002340 vs. ExPASy TrEMBL
Match: A0A5D3DNT5 (Josephin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00960 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVLKHG-GGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVS 60
           M+RK+SKRVSFSPDVND PTVVLKHG GGD GAG  SFGLSR++R+LPV FLQS KARVS
Sbjct: 1   MSRKASKRVSFSPDVNDKPTVVLKHGNGGDGGAGMWSFGLSRETRYLPVRFLQSLKARVS 60

Query: 61  EAIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSG 120
           EAIRFVST+KSSRKVSSA+TFTRSRSVSDSM+SHRAEAIEDCIEFLNHSSSLSR NSVSG
Sbjct: 61  EAIRFVSTRKSSRKVSSASTFTRSRSVSDSMDSHRAEAIEDCIEFLNHSSSLSRSNSVSG 120

Query: 121 STY 123
           STY
Sbjct: 121 STY 123

BLAST of CmoCh06G002340 vs. ExPASy TrEMBL
Match: A0A1S3B5Q5 (josephin-like protein OS=Cucumis melo OX=3656 GN=LOC103486317 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.0e-47
Identity = 107/123 (86.99%), Postives = 115/123 (93.50%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVLKHG-GGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVS 60
           M+RK+SKRVSFSPDVND PTVVLKHG GGD GAG  SFGLSR++R+LPV FLQS KARVS
Sbjct: 1   MSRKASKRVSFSPDVNDKPTVVLKHGNGGDGGAGMWSFGLSRETRYLPVRFLQSLKARVS 60

Query: 61  EAIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSG 120
           EAIRFVST+KSSRKVSSA+TFTRSRSVSDSM+SHRAEAIEDCIEFLNHSSSLSR NSVSG
Sbjct: 61  EAIRFVSTRKSSRKVSSASTFTRSRSVSDSMDSHRAEAIEDCIEFLNHSSSLSRSNSVSG 120

Query: 121 STY 123
           STY
Sbjct: 121 STY 123

BLAST of CmoCh06G002340 vs. ExPASy TrEMBL
Match: A0A0A0LFD2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732440 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.8e-47
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVLKH-GGGDDGAGTLSFGLSRDSRHLPVGFLQSFKARVS 60
           M+RK+SKRVSFSPDVND PTVVLKH GGGD GAG  SFGLSR++R+LPV FLQS K RVS
Sbjct: 1   MSRKASKRVSFSPDVNDKPTVVLKHGGGGDGGAGMWSFGLSRETRYLPVRFLQSLKNRVS 60

Query: 61  EAIRFVSTKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRLNSVSG 120
           EAIRFVST+KSSRKVSSA+TFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSR NSVSG
Sbjct: 61  EAIRFVSTRKSSRKVSSASTFTRSRSVSDSMESHRAEAIEDCIEFLNHSSSLSRSNSVSG 120

Query: 121 STY 123
           STY
Sbjct: 121 STY 123

BLAST of CmoCh06G002340 vs. TAIR 10
Match: AT5G01225.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09032.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 58/132 (43.94%), Postives = 74/132 (56.06%), Query Frame = 0

Query: 1   MTRKSSKRVSFSPDVNDNPTVVL------KHGGGDDGAGTLSFGLSRDSRHLPVGFLQSF 60
           M+R++SKRV FSPD   N  ++       +HG      G  SF  S DS       L+S 
Sbjct: 1   MSRRASKRVRFSPDPEANDELIFPTHSSSRHGRRRVVVGIFSFSFS-DSPATTKRLLRSI 60

Query: 61  KARVSEAIRFVS--------TKKSSRKVSSAATFTRSRSVSDSMESHRAEAIEDCIEFLN 119
             RV +  R++S        T  SS  VSS+    +S+S++ S ESHRAEAIEDCIEFLN
Sbjct: 61  GDRVGKTFRYISFGRMNTKTTPSSSSNVSSSLYLMKSKSLNGS-ESHRAEAIEDCIEFLN 120

BLAST of CmoCh06G002340 vs. TAIR 10
Match: AT3G09032.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-12
Identity = 60/147 (40.82%), Postives = 77/147 (52.38%), Query Frame = 0

Query: 1   MTRKSSKRVSF--SPDVNDNPTVVLKHGGGDDG---------AGTLSFGLSRDSRHLPVG 60
           M+R++ KRVSF  +P+  D P +  KH G              G LSFGL    R  P  
Sbjct: 1   MSRRACKRVSFNPNPEATDEP-IFPKHDGLSSSHHSRRRVVLVGILSFGL----RSSPAA 60

Query: 61  --FLQSFKARVSEAIRFVSTKK----------------SSRKVSSAATFTRSRSVSDSME 119
              +Q   AR ++ +RF+S ++                SS   SSA    RS+SV+++ E
Sbjct: 61  RKLIQRIGARFAKTLRFISFRRNTTDRRKTSSFLLPSSSSSSSSSAIYMKRSKSVNET-E 120

BLAST of CmoCh06G002340 vs. TAIR 10
Match: AT1G07300.1 (josephin protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 39  LSRDSRHLPVGFLQSFKARVSEAIRFVSTKKSSR----KVSSAATFTRSRSVSDSMESHR 98
           L R +       ++    + ++ +R V  +K  R    KVSS +  ++   +  + +SHR
Sbjct: 45  LPRKTEVTAAKLIKHLGCKFAKGLRLVVMRKKKRSPPSKVSSFSGRSQPPIIPINNDSHR 104

Query: 99  AEAIEDCIEFLNHSSSLSRLNSVS 119
           +EAIEDCI+F+N SSS +R NS S
Sbjct: 105 SEAIEDCIQFINSSSSFTRSNSTS 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1H9Z74.2e-57100.00uncharacterized protein LOC111461879 OS=Cucurbita moschata OX=3662 GN=LOC1114618... [more]
A0A6J1I1K71.0e-5597.54uncharacterized protein LOC111470059 OS=Cucurbita maxima OX=3661 GN=LOC111470059... [more]
A0A5D3DNT54.0e-4786.99Josephin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35... [more]
A0A1S3B5Q54.0e-4786.99josephin-like protein OS=Cucumis melo OX=3656 GN=LOC103486317 PE=4 SV=1[more]
A0A0A0LFD28.8e-4786.99Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G01225.12.0e-1443.94unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G09032.17.0e-1240.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G07300.11.8e-0434.52josephin protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePANTHERPTHR34355JOSEPHIN-LIKE PROTEINcoord: 1..121
NoneNo IPR availablePANTHERPTHR34355:SF1JOSEPHIN-LIKE PROTEINcoord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G002340.1CmoCh06G002340.1mRNA