CmoCh06G002170 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G002170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionselT-like protein
LocationCmo_Chr06: 1170352 .. 1176204 (-)
RNA-Seq ExpressionCmoCh06G002170
SyntenyCmoCh06G002170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGGGAATCGGACACGGAGTCTTTGATTTAGTCCTATTTTGATTATTGGTCGTAGCACGTGCCGTTGTTGTTGACTTAATGGCATTCCTGTCTGAAGACCCATGCAGAATATTGTTTGACCTGCCGACTTTGTTGACTTTCCGTCTTCCTTAATTGGGCCTTTTCTCATTTACATTTTGGGCCTGCGAAAACTTGGGCTACCAAATAAATTGTTAGAGGCTTCGGCCCATTTGGCCCATCTATATGACTCGTGAACGTGCAGTTGGACGGGGTATAAATAACGCGGCAAAATAATTACACGAGGACAATTGTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAATCCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGGTGAATGATTTTCATGTTTGATTGGATTCATCTTGATTTTTGTTCGTGTTTTGTGATATTCAGCAACTTGATTTGTTGTCTTGGTTTGGAATGCAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAGTAAGTGAATCAAACGCTTATGTGGTTTTCCTTCCGGTGTTTCTTCTTAACATCCTTGATGGAAGCGAACATTTTATTTTCTATCTCACTTGTGGTTGTTGAGAGTCCCTATGATGAAAAGCTGGTTGTACGCTGGAATGTTCGCTGTTGTTGTTCCTTTAAATTCGATTTCGTTGTTTTTTGTTTTTTTTTCTTTATTTTCCACAACGCAGGCCTCTTTTATTATCTTTGACTTTAATTTCATTCCTCGATTTAACAGACGTTTCGATTTCTATACTCTCTTGTGGTTGTTTTTGTGAGAATATTACTCTCTAGTGGTTGAGATTCGTTATGATGAATAGTTGGTTGTACTTCGGAATTTTCTCTGTTGTTGTTCCTCTAAACTTGATTTTTTTTTTTTTACTTCTTTAAGCTAAGGTTTCTGTTATTATGTTTATATTCGTCTATTGATCAAACAAACATTTCGATTTCTCTGCTATGAACTATCTAGTGGTTGCTGAGAGTCCTTATGATGAAAAATTAGTGGTACTTTGGAACAACATGATTTCTTTGTTTTTTTTTTTCATTTGATTAGCACAGGTTTCTTTTATTTCTGTAACATCCTCGATTGAACCAGTATTTCAATTTCTCCACTCTTTCCTGGTTGTTGAGAATCATCATTATGAAAAACTGGCCGTACTCTGCTGCACTGTTGTCGTTCGGTTAAACATTGTCTTAAGTTTTTTTATCATCGTCAACTTCCTCAGTTGAACAAGTATTTCAATTTCTCCTCTCTAGCGGCTATTGAGAGTCATTATAATAGAAAACTGGTTGTACACTTCTTCACTGTTCTTGTTAAAGAATCCGAGTTTGAGTGAACATAGGTGCAGACCTCAACTCAGAAATACAATTTGTAATATTCCATTCGGAGCCAACTTCACATCGTTTGGTACTTAGGTTACCTGATTTGGAGCAAGACAGAAATGGAAGTTTCAATTAACCTCCCCTTTTTGAGACTGTAATTAAATGAACTTCTCGTGCTTTAGCGTGTCTTGTGCTTTAGCGTGTCCATTGATAAGCAACTTCATTAGAGTAAGTTTGCAAGCTTAATTTAATTAGGTATAAGAACAGGTTAATGTGCAGACTACTCAATGTTTAGGTTTAGGATAAAAAGTGAACTGGATTCACGATGATAGAATTTTGGTCTCTGCTCATAGAGCATAAGAATTGAACACAAGTGGGCCAAAAGTGAACTGGATTTACAATTGTTATTACACGAGATAGTTTTAAAAAGAATTTCACTCGTGAACCCAAGTGGGCCAATAGATCGTCCCATTGTTATTCACAGATAGGAGATGTTATGAACCCGTGGCCATGCATTTGATCCATACGGTTTTGGAATGTTTTCATTAAAATGTTGTTGTACCATCATCTTATCTCAATTTGTGGCAGTGCTTATGATTTTACACTTTTTGCAGAGGAACTGCAATAACGATGAAAAATATGCTGGAGTAATCATTTCCTGGACTTGAAGTTATTTTGGCGAATTATCCCCCACCCATCCCAAAGCGTCCTCTCAGTAAAGTAGTACCCGTCGTTCAATTTGGAATCGTTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTTGGAAGCATCGCAAGCACGTGGCTGTTTGCAAATTTTATCCGGTCGTTCTTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCCCTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTTCCCAAAATGCCTCATATCAATGAAGACAGTATTCTTTGATTAAAAACCCATGATCATTTTCTAAATTAGCCGATGTGGGACTTTCATCATCCAACAATTCTTACAGAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTAAGATTCTTTTGAAATCTCATTCGGGTCATTTTTAGTGAGATGCTATTTACTGATCGTATCCATTTTCTGAAGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTAGTGAGATCGAGTTGAGAGATGTTATTGGTAGGAAACTTTCTGGGTCGAGATTTGTCGACAACTCGGGAGGATTTTGGTCATAGGTATGTGACTTCTTGTGATCAATACTATGAAATTAACAACTGGTGATGTCATGACAAATCTAATCCTAGTTCATAATAGCCAAGCAGGAGCATGTGGGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGTAACGTTTCTTTCCTACGAAATCAAACTTTTAAACTTTCAAATTTCAAAATAACTTGATTTATACTAATTAATTACCTCCTGTTTCATTAATATTTGCTTCTTATAAGGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTACTAGACTTTGCTGGTGAGCAGACCATTGGTATCATTTACTAGTAATTTCGGAAATGTTTGCTTAAAAATGATCTAATGAGTAGTGCAGTAGAGATTATAATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTTAGAATTCACAAATCTATGAAAAAAAATTAAAAAATTTAATCTTTTATTAGACACAATATTTAGTTTTATGTATAATTAATTCGTGGAGGACTCATTTGACAATCTCTATATACAAAATTATCTAATATTTTTTTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCGTGTTTAATTCTTGTTCATTATATTTTTTCCCATCATCACCTACTGAAACGAATAAACTGAGATACAAAATTCAAATTATTGGCCAAAATGATTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTACCAAATAAATTATATGCATGCATGTACGTATATATGCATGAAAAGATAAACGGTATGTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAATTTAAAAAAGAACAAAAATATGTATTTTTAACAAGCGTCATGAAATCCATTCCAAGGCCTAACTTTCCGTTTCTAAGCAAACACATCAAAATCCAAACGAATCTAACCTTAAAAATCTCGCAGCCAAAAAGAAAAAAAACAAAACAAATAAACACACCACCAAAACTATATGATTTTTTTAATTAAGTTTTAAACGTTACATTCAAATTTTGTTGGTGAAATCTCACCTCAGAAATTATCCGTGTTTAAGAAATGGCCAGAAAACACCCGTAGCTTTTTAAAAACGCAACTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTAAAATTTTATTTTAACGGAAAAACTAAAAAGCTCTTATTGCACACCCCCACACCCGGGGTCTCGTCTCTCAGCATCCTTCTGCAACCCGTAAGCTCTGATTCTAAGATGAAGCTGAGCCACGGCGGCCAAAAATCTTACGGTTTGCGCTGGCGTAAGAATCTCCGCCACTTTCAACGCCGTTTCTCTTCTAAAAAAATCAGCACTCGCCAGCACCGACTGAAACGCCGCTTTCAACGCCTCCATTTCGGTCCCACCAGTAACGCCGTCGTGGCCCTGCCTCCGGAAAAACTCCAGCAACGGCGGCGCCGCCACTTTTTCTTGAATCTTCGCTAAGTCATTGTTTAGCATCCGCTCTTCGACCTTCACGTCTTCCCTCAGCCGCCCAATTCTCAACACTTGATCGTCCCACAAGTCGTTTATGGACTCGTTGACGAGCCGGAAAATCAGGCCCGGCCGGAATCCGCCGATCCACAACAGACTCTGCTCGTAGGTGGTGAACCAAGTGGGGGAAAAAACGAGAAAAATATCCCTTTGGGCAATTCTAGATTTTTTCTCGTAATATTCCTCGTAGTGGCTGAGGGTTCGAGAAATTAAATCATCGAGATCGCCGTTGTCCGCAGCGTCGTCGGGATGGCGGCGCGTGGCTGTCAGAAGCTCGTCGAGATATTGTTGTTGGCGGAGAAGCCAGCCTTCAAAAAATGCTGTGAATGAGTCAACATTGTAATCGTCCCCTGGCATTTACAGAGAAATACAGAGAGACAAAAGGAGGTGTGGCGAACTCAAGGCTGATTCAAGAGAGACAGAAACAGAGAATTTTATGGGATTTTTTTTTTTTTTCTTTTTGTTTTTTTTTTGGGTGTCAAGATTTTGAGATTTATGTCTCTATATGTTACAGTTATGAAAGGAAACTTTGGGAGAACACTTTGCTTA

mRNA sequence

CAATGGGAATCGGACACGGAGTCTTTGATTTAGTCCTATTTTGATTATTGGTCGTAGCACGTGCCGTTGTTGTTGACTTAATGGCATTCCTGTCTGAAGACCCATGCAGAATATTGTTTGACCTGCCGACTTTGTTGACTTTCCGTCTTCCTTAATTGGGCCTTTTCTCATTTACATTTTGGGCCTGCGAAAACTTGGGCTACCAAATAAATTGTTAGAGGCTTCGGCCCATTTGGCCCATCTATATGACTCGTGAACGTGCAGTTGGACGGGGTATAAATAACGCGGCAAAATAATTACACGAGGACAATTGTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAATCCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGAGGAACTGCAATAACGATGAAAAATATGCTGGAGTAATCATTTCCTGGACTTGAAGTTATTTTGGCGAATTATCCCCCACCCATCCCAAAGCGTCCTCTCAGTAAAGTAGTACCCGTCGTTCAATTTGGAATCGTTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTTGGAAGCATCGCAAGCACGTGGCTGTTTGCAAATTTTATCCGGTCGTTCTTGTTAGACGAACACGACTCTCCACAATAGTATGATATTGTCCCCTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTTCCCAAAATGCCTCATATCAATGAAGACAGTATTCTTTGATTAAAAACCCATGATCATTTTCTAAATTAGCCGATGTGGGACTTTCATCATCCAACAATTCTTACAGAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTAGTGAGATCGAGTTGAGAGATGTTATTGGTAGGAAACTTTCTGGGTCGAGATTTGTCGACAACTCGGGAGGATTTTGGTCATAGCCAAGCAGGAGCATGTGGGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGCATCCTTCTGCAACCCGTAAGCTCTGATTCTAAGATGAAGCTGAGCCACGGCGGCCAAAAATCTTACGGTTTGCGCTGGCGTAAGAATCTCCGCCACTTTCAACGCCGTTTCTCTTCTAAAAAAATCAGCACTCGCCAGCACCGACTGAAACGCCGCTTTCAACGCCTCCATTTCGGTCCCACCAGTAACGCCGTCGTGGCCCTGCCTCCGGAAAAACTCCAGCAACGGCGGCGCCGCCACTTTTTCTTGAATCTTCGCTAAGTCATTGTTTAGCATCCGCTCTTCGACCTTCACGTCTTCCCTCAGCCGCCCAATTCTCAACACTTGATCGTCCCACAAGTCGTTTATGGACTCGTTGACGAGCCGGAAAATCAGGCCCGGCCGGAATCCGCCGATCCACAACAGACTCTGCTCGTAGGTGGTGAACCAAGTGGGGGAAAAAACGAGAAAAATATCCCTTTGGGCAATTCTAGATTTTTTCTCGTAATATTCCTCGTAGTGGCTGAGGGTTCGAGAAATTAAATCATCGAGATCGCCGTTGTCCGCAGCGTCGTCGGGATGGCGGCGCGTGGCTGTCAGAAGCTCGTCGAGATATTGTTGTTGGCGGAGAAGCCAGCCTTCAAAAAATGCTGTGAATGAGTCAACATTGTAATCGTCCCCTGGCATTTACAGAGAAATACAGAGAGACAAAAGGAGGTGTGGCGAACTCAAGGCTGATTCAAGAGAGACAGAAACAGAGAATTTTATGGGATTTTTTTTTTTTTTCTTTTTGTTTTTTTTTTGGGTGTCAAGATTTTGAGATTTATGTCTCTATATGTTACAGTTATGAAAGGAAACTTTGGGAGAACACTTTGCTTA

Coding sequence (CDS)

ATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTCACTGATATCGTGAATCTTTTTACTCCCCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTCAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCTACGTTTCTTGTTCTTCAGAGGAACTGCAATAA

Protein sequence

MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQSGIGGIGHGSVININFYVSCSSEELQ
Homology
[Close]
BLAST of CmoCh06G002170 vs. ExPASy Swiss-Prot
Match: Q9STZ2 (SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.3e-14
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E + FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          +   G+G+G+ + INF +SCS
Sbjct: 61 T---GVGYGNTVEINFCISCS 68

[Close]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match: A0A6J1F6D5 (selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429630 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ
Sbjct: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60

Query: 61 SGIGGIGHGSVININFYVSCSSEELQ 87
          SGIGGIGHGSVININFYVSCSSEELQ
Sbjct: 61 SGIGGIGHGSVININFYVSCSSEELQ 86

[Close]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match: A0A6J1F5S6 (selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442401 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.1e-33
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQI LLGLPIFLLFTDIVNLFTPPPPKP NH PPRVHYQPKS+ VIQEP++FPTEK+
Sbjct: 1  MDRTQIVLLGLPIFLLFTDIVNLFTPPPPKPVNHPPPRVHYQPKSQPVIQEPLEFPTEKR 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          SGIGGIG GSVININF VSCS
Sbjct: 61 SGIGGIGQGSVININFCVSCS 81

[Close]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match: A0A6J1IZR1 (selT-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482133 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MDRTQI LLGLPIFLLFTDIVNLFTPPPPKP NH PPRVHYQPKS+ VIQEP++FPTEK+
Sbjct: 1  MDRTQIVLLGLPIFLLFTDIVNLFTPPPPKPVNHPPPRVHYQPKSQPVIQEPLEFPTEKR 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          SGIG IG GSVININF VSCS
Sbjct: 61 SGIGEIGQGSVININFCVSCS 81

[Close]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match: E5GBE6 (Selenoprotein t OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP-ANHSPPRVHYQPKSESVIQEPIQFPTEK 60
          MDRT+I LLGLPIFLLFTDIVNLFTPPPPKP ANH PPRVHYQPKS+SVIQEP++FPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFYVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match: A0A5D3DMW2 (SelT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00710 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP-ANHSPPRVHYQPKSESVIQEPIQFPTEK 60
          MDRT+I LLGLPIFLLFTDIVNLFTPPPPKP ANH PPRVHYQPKS+SVIQEP++FPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFYVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]
BLAST of CmoCh06G002170 vs. TAIR 10
Match: AT5G58640.1 (Selenoprotein, Rdx type )

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIQFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E + FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFYVSCS 82
          +K SG+GG IG+G+ + INF VSCS
Sbjct: 61 QKTSGLGGAIGYGNTVEINFCVSCS 85

[Close]
BLAST of CmoCh06G002170 vs. TAIR 10
Match: AT5G58640.2 (Selenoprotein, Rdx type )

HSP 1 Score: 88.2 bits (217), Expect = 3.5e-18
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIQFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E + FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFYVSCS 82
          +  SG+GG IG+G+ + INF VSCS
Sbjct: 61 Q-TSGLGGAIGYGNTVEINFCVSCS 84

[Close]
BLAST of CmoCh06G002170 vs. TAIR 10
Match: AT3G47300.1 (SELT-like protein precursor )

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 0 

Query: 1  MDRTQIDLLGLPIFLLFTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIQFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E + FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFYVSCS 82
          +   G+G+G+ + INF +SCS
Sbjct: 61 T---GVGYGNTVEINFCISCS 68

The following BLAST results are available for this feature:
BLAST of CmoCh06G002170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STZ22.3e-1449.38SelT-like protein OS=Arabidopsis thaliana OX=3702 GN=At3g47300 PE=2 SV=2[more]
BLAST of CmoCh06G002170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F6D56.0e-42100.00selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429630 PE=4 SV=1[more]
A0A6J1F5S65.1e-3387.65selT-like protein OS=Cucurbita moschata OX=3662 GN=LOC111442401 PE=4 SV=1[more]
A0A6J1IZR14.3e-3286.42selT-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482133 PE=4 SV=1[more]
E5GBE63.7e-3186.59Selenoprotein t OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3DMW23.7e-3186.59SelT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00... [more]
BLAST of CmoCh06G002170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58640.12.9e-2054.12Selenoprotein, Rdx type [more]
AT5G58640.23.5e-1852.94Selenoprotein, Rdx type [more]
AT3G47300.11.6e-1549.38SELT-like protein precursor [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..47
NoneNo IPR availablePANTHERPTHR13544:SF12SELT-LIKE PROTEINcoord: 1..81
IPR019389Selenoprotein TPANTHERPTHR13544SELENOPROTEIN Tcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G002170.1CmoCh06G002170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0098869 cellular oxidant detoxification
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0004791 thioredoxin-disulfide reductase activity