CmoCh06G001490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G001490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
LocationCmo_Chr06: 800677 .. 805253 (+)
RNA-Seq ExpressionCmoCh06G001490
SyntenyCmoCh06G001490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTTCTGTTCTTGTTAAGATATTTTCTTTCTTCCATTAAAACGCTGCGTTTTGTATCCCAACAACTTGGGCTGGGCCTTGGATTTGAAGCCCATTTTTTATTACGGAGCCCAATGCCTGGCCCAACTTCTTCCTGAATAACCTTCGTCGTCGCAAGATTTTTGGATTCGTTAATTTACGGTGGCGCTAAAGAGAACCTCCGGAAATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTGATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGGTTCGTCTTTTCCTTGATTTTCTTTTTTCCGTCCGAATTCTTTTCATGTTTGTATAATCTGTCGTTCTTACGTTTCAACCTTAAACTTGTCGTTAATAGTTTAATTTTGAGCTTTACCTCAAATTTCGGACTGTAGTGCGTTTCAGTTTTTCGTTGACAAACTTCAGAATGCAATATAGCCAACTGAGCTTCATTAAGTTCACGATATTGGATTGGAGACGTGGCGATTTGATGATTAGTTTAACGACGTGATGGAATCAATCTGGAGATCTGTTGATATTTTCATTCTTAATATCTAAGAATTTGCATTGTTATAGTTGTTGTCCGTCCAATCTTGTCAACGTGTTTGTTTTGACACAATCGTGTTTCAATCATGTATGTAATGTTCAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAGTACGTAATTTCTCTAGCTCGGTTCAAGGTTAAAAGTGCATAATTCGGTTCAAATCACTCATCCTGTACGATTGGTTATAATTCTTATGACTATCTTGGGGATCATGTTCACTTGCTTTTTCGTTCGTGTAGACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCAAATTGTGAGACTAATTAATTGATCCCCAAAATCTCATATCTTCCTTCAATTTACTTTTTCTGTTGTTGTTGTCTTTTTTTTTTTTTTTTTTTACTGGTGCGTTGTCAAAAGAATATTGTGAAATGCTTTATAAAACTTCTTATCGATAACCGGTAGGCAAACAATTTTGCTCTTGTAGTATGGTAAGGTTTGTTATATGAATCATCGATGCACAAGCAGTTCTTGAAGATATTGCTTGAAGTATTGACTGCTATGTGATATAGTATTCTCAGGATTTGGAGCTTAAGCAACCATTTAGCTATTGACCATTGAAAAGATTGGTTCTCAAATTTAAGAAACCATGGTTTATAGGCTCTAAACTAACAGTAACACGGCTGTGTATGCTGGTAAATGTGATTGCCACTGCTTCCAATTGAACTGGTTATTTATGGATGCAAATTCATCCAAGACGGTGCTCATACTGCAAGTCATGATGTCGTATTATGAATTATGGTCCTATGAATTGGGTGGAGTCCCTTGAATGACCTCGGATCTGTAGTATTCTTCTGCATGGGTGGGAACCGAAGAAATTTTATGAATGTCATAGCAAGTTGAAAGCAACTTCTCATTGGTAAAATTGGTCTTATTCTGGGAATCATGTTGAACGTAGGCATCAGCCCAAGCAAATTGGAGAATTTGATCTGGTCTATTGTGAAGTATTAAAAGCACTTCGTGATTGAAGTGTTGGCATCCAACTAATACAGGATTTGAGTTTGACGTAGATTGACTCATGTCAGTATGTTATGACATGCTTTTTATCCCTCGAATCTAACATCGACCAAAATTGTTCCTGAAATATTGTATGTAGTTGTAGTTTTTGACTGCCATGTTTTCATGTTGTGTCACGTTGTGTGTTTATGTATCTATTTCTTTGGTTACATTAATTCCCTTTTTTGGCCCTTATTAGGTACCATTTTACAGTTACTTGTGAAGCACTGATAATATATGGGATTTACCAAGGTTATCTGTTTTCAATAATTTGTTTCAAGTTTTCCAACTAGCGAGAGTAATGTTTCGTGAACTTGTATTTTTCTTTTGTCTAAAATTCAATATCACTCAAAATGCATCTTGAAGGCAAATTGTTATAAAAGAACAGTAAAATAGCCATATTTATCAAGATAGCGTAGCCTTGACTTCTGTTCATTTTATTTCAGTCGTTTTCTGCCATTAATTGCTTCCCATCCCTTCAGTATTACTTAATAACATGCTTCAGATTACACCTTAGATTCTATTTGAATGACATTGCTTCCAGATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTATTATATTATTACTGAATTTTCTAATAAGTGTGTGTTCATATGTTGGATGTTTTCTTAAGTAAATATCTTGTGGTCGTGTAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGTAATCACTCTCACCGCCAGCAGGATTTCTGAAGAACAATTATTATAGAGAAATGTCATTTCATTTTAAATTTTAACTATTACTTCTTGATACTCTCCCTTCTGCAGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTAGAACAATAATCACTTCTCAATTACCTGCAAATAACTCTTAGATCATTATGCGTTTCTTTTATCCCTAGAGAATAACATACCTGATACCACCACCAACACCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCTTCTCTCTTTCGGAACAAGATGTTTATATGGTTACCATATCTGGTTTATGAAGGAAATGGTTTTAGGATAGAATTAGTAATGTGATTAGGGTCTTAAGTACATAGTAGCACTTAGCTAAAGGAGTTGTTTTGAGGGTTTGTTACAAAGAGAGTGAGTGAGAATGGTTAGGTAGGCAGTCGTTTAGTAGAATTTAGGCTTAATTTAGTATGCTCGAGGGAGGATTTATGCTTAAGTTAGTATGCTCGAGGGAGGATTTATGCTTAAGTTAGTATGCTCGAGGGAGGATTTATGCTTAAGTTAGTATGCTCGAGGTTGAACGCTCCAACTACCTCAAATACTTGGGGAGTTATATTGTAATTCCGTTATCTTTTTTCTTTCTATATATCTAGGTTCTATCGGCTAGCCACAATCACGTCTGCACGTAATGAGAATATATGAGCATATGATGATTCTTAGCTCTTCTCAATGATGAACTGCAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTCGCCAATTAAAAAAGTAATTGAAGGTAAAATGTGATGTTGATGATCACATGCTCTGTAAATTATTTGGCAAGCGCGATGTTTTCCTAAATTTCAATGCACAGGGAGGCTGGAGAAGTTTATACAGCCCCCACCACTTTTTCTTTTTATGTTCAAATGAGCTTCATCATTGTCGTTTTTTCCCCTTTTTTTCTCTCCCATATATTCCATTCATTCTTTTTTTTGGTTGACTCTTGCTCTTAGGTATCGTTTACATGTTTTTTCGTTACTTCATAGAATTACGATATTCGATATATAGCTTGGTTGCATATGCACAGAGTAAGGGGTGGTTTGTTTGCATTTGTATCTTTTCGGGATGAAAATATTGAATATGTAGGATCCCGTTTGATAACGATTTTGTTTTCCGTTTCTTGTGAGTATTTTTTGTAACTGGTTTTGTT

mRNA sequence

ACTTCTGTTCTTGTTAAGATATTTTCTTTCTTCCATTAAAACGCTGCGTTTTGTATCCCAACAACTTGGGCTGGGCCTTGGATTTGAAGCCCATTTTTTATTACGGAGCCCAATGCCTGGCCCAACTTCTTCCTGAATAACCTTCGTCGTCGCAAGATTTTTGGATTCGTTAATTTACGGTGGCGCTAAAGAGAACCTCCGGAAATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTGATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCAAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTCGCCAATTAAAAAAGTAATTGAAGGTAAAATGTGATGTTGATGATCACATGCTCTGTAAATTATTTGGCAAGCGCGATGTTTTCCTAAATTTCAATGCACAGGGAGGCTGGAGAAGTTTATACAGCCCCCACCACTTTTTCTTTTTATGTTCAAATGAGCTTCATCATTGTCGTTTTTTCCCCTTTTTTTCTCTCCCATATATTCCATTCATTCTTTTTTTTGGTTGACTCTTGCTCTTAGGTATCGTTTACATGTTTTTTCGTTACTTCATAGAATTACGATATTCGATATATAGCTTGGTTGCATATGCACAGAGTAAGGGGTGGTTTGTTTGCATTTGTATCTTTTCGGGATGAAAATATTGAATATGTAGGATCCCGTTTGATAACGATTTTGTTTTCCGTTTCTTGTGAGTATTTTTTGTAACTGGTTTTGTT

Coding sequence (CDS)

ATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTGATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCAAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGATTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTCGCCAATTAA

Protein sequence

MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVCWFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Homology
[Close]
BLAST of CmoCh06G001490 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.8e-53
Identity = 107/174 (61.49%), Postives = 128/174 (73.56%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E+++E R  + AP  F++V+ FQ L+ WLD LKK+GS N  E ELR  IKQLLREAS
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
            LSQP+TFAQAAKLRRSAA KEKELA Y E   K+IK SY +Y + LL SKV+IY++LV 
Sbjct: 61  ALSQPATFAQAAKLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVL 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCR 175
            FWR  +A +   LVQPFG  LSW  GG +  +V VGIIPWLILS RVSK+VCR
Sbjct: 121 CFWRTPIAIIAKQLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174

[Close]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match: A0A6J1G1T6 (uncharacterized protein LOC111449636 OS=Cucurbita moschata OX=3662 GN=LOC111449636 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match: A0A6J1I7A9 (uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261 PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.6e-89
Identity = 174/177 (98.31%), Postives = 175/177 (98.87%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESRSKK+KSSYGLYSRVLLISKVLIYIVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRSKKVKSSYGLYSRVLLISKVLIYIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN 178
           WFWRASVATVPHHLVQPFGRFLSWRAGG VNDYVKVGIIPWLILSTRVSKFVCRVAN
Sbjct: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGIVNDYVKVGIIPWLILSTRVSKFVCRVAN 177

[Close]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.7e-78
Identity = 154/175 (88.00%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           MEAE IVEH +SI AP IF IVI FQFLA WL+HLKK GSN+QVE+ELRKSIKQLLREAS
Sbjct: 3   MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLREAS 62

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYS+VLLISKV+IYIVLVC
Sbjct: 63  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSQVLLISKVIIYIVLVC 122

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           WFWRASVATVPHHLVQPFG+FLSW+AGGTVNDYVKVGIIPWLILSTRVSKFVC+V
Sbjct: 123 WFWRASVATVPHHLVQPFGKFLSWKAGGTVNDYVKVGIIPWLILSTRVSKFVCQV 177

[Close]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.8e-78
Identity = 154/175 (88.00%), Postives = 166/175 (94.86%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E IVEHR+SI AP IF IVI FQFLA WL+HLKKRGSN+QVEMELRKSIKQLL+EAS
Sbjct: 1   MEPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKKRGSNSQVEMELRKSIKQLLKEAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
           TLSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYS+VLL+SKV+I+IVLVC
Sbjct: 61  TLSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSQVLLVSKVIIHIVLVC 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           WFWRASVATVPHHLVQPFG+FLSWRAGGTVNDYVKVGIIPWLILSTRVSKFV RV
Sbjct: 121 WFWRASVATVPHHLVQPFGKFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVFRV 175

[Close]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 153/174 (87.93%), Postives = 162/174 (93.10%), Query Frame = 0 

Query: 2   EAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAST 61
           EAE IVEHR+SI AP IFLIVIAFQFLA WL+HLKK GSN+QVEMELRKSIKQLLREAST
Sbjct: 6   EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 65

Query: 62  LSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVCW 121
           LSQPSTFAQAAKLRR AAAKEKELANYQESR+K+IK+SYGLYSRVLLISKV +YI LV W
Sbjct: 66  LSQPSTFAQAAKLRRLAAAKEKELANYQESRNKEIKTSYGLYSRVLLISKVFMYITLVFW 125

Query: 122 FWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRV 176
           FWR SVATVPHHLVQPFGR LSW+AGG VNDYVKVGIIPWLILSTRVSKFVC+V
Sbjct: 126 FWRVSVATVPHHLVQPFGRVLSWKAGGIVNDYVKVGIIPWLILSTRVSKFVCQV 179

[Close]
BLAST of CmoCh06G001490 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 208.0 bits (528), Expect = 6.3e-54
Identity = 107/174 (61.49%), Postives = 128/174 (73.56%), Query Frame = 0 

Query: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60
           ME E+++E R  + AP  F++V+ FQ L+ WLD LKK+GS N  E ELR  IKQLLREAS
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61  TLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVC 120
            LSQP+TFAQAAKLRRSAA KEKELA Y E   K+IK SY +Y + LL SKV+IY++LV 
Sbjct: 61  ALSQPATFAQAAKLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVL 120

Query: 121 WFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCR 175
            FWR  +A +   LVQPFG  LSW  GG +  +V VGIIPWLILS RVSK+VCR
Sbjct: 121 CFWRTPIAIIAKQLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174

The following BLAST results are available for this feature:
BLAST of CmoCh06G001490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1H5D28.8e-5361.49Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1[more]
BLAST of CmoCh06G001490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G1T61.4e-90100.00uncharacterized protein LOC111449636 OS=Cucurbita moschata OX=3662 GN=LOC1114496... [more]
A0A6J1I7A94.6e-8998.31uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261... [more]
A0A1S3BKE13.7e-7888.00uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=... [more]
A0A0A0L4T94.8e-7888.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1[more]
A0A6J1L8842.6e-7687.93uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212... [more]
BLAST of CmoCh06G001490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16444.16.3e-5461.49FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..91
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 12..168
NoneNo IPR availablePANTHERPTHR11760:SF44BNAC07G33680D PROTEINcoord: 12..168
IPR028945Get1 familyPFAMPF04420CHD5coord: 39..161
e-value: 4.3E-10
score: 39.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G001490.1CmoCh06G001490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048767 root hair elongation
biological_process GO:0071816 tail-anchored membrane protein insertion into ER membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0043529 GET complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0043621 protein self-association