CmoCh06G000570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L7-1-like
Location	Cmo_Chr06: 359066 .. 361277 (+)
RNA-Seq Expression	CmoCh06G000570
Synteny	CmoCh06G000570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCACACCGTCTTCATCTCCTTCTCCCGCAGATCAGTTTCGCCGCCGTCTTTATTCCGATCGTGGTATCGCAGCTTCCCGCGACTTTCTACTCTATTGTCATTACTGGTATACTCCCGATCTCCATCCGTCTTTCTTCTCACTATAAAAACGACTTGTTGCTTGTTTCATGCGTTGATTACTCCCTTGCCCTGTTGGTATTCACTACGGGCTGTTCTTTCCGGTTTGTTTTTCTGATTGGTTGTTGATAGTCTCGTGTGTTGAATGTGAGCTAACTGTTTGCTATTGTTGCCATTTGCACCATAAATCACTGCGGTTCGTTTTGTTTTTGTTTTTTCAATGATTCTTTTGTAGCATAACACCACTTCGAATTGAAACTCTTTCATATTTAATGTTCTCTCCCTCATTGGTCACGTACAATACCGTCTGCAATTTTAGTGTTTAAGGCTAGCTTTGTTTGTTTAGTTTACGATATGCTTGCTCTATAATTCATTGAGTTTCTGCTATTGAGAGTGGGAGTTTCATTTTGATATTTTTTTCTGTCTACAGGTGACCTACGATGGCGGAAGAGGATCCAAAGCCACTCACATATATACCAGAGGTTATACTGAAGAAGAGAAAGGTCAATGAACTGGCGGCACTGAGAAGAAAGGAACAGTTGGAATTAAGGAAGCTCAATTCGAAGAAAAACAAGGATGGTTTTATTAAGCTGCCTGAAGAATTTGTCAGAGAATATCGTGCTAGAGTAACTCATCTACTTTGAAGTTGTTTCATCTACTTTGAAGTTAGTGTGAAATATGCTTAATCAACACATGCATAAATCCCCTCTTAAGTAACTTTTCTTAATCGTGTATATATAAGTATATTTATTCAAATTTGTCTTCGATAATCATGTGCTTTCTTATCAACATGTTCAAATTTCTTCTAGTGGGTTTTTAACTATGTGCCTAGTAATCAACATGTTAAGCATCACCCTGATTCTTTTCATACACATTTATCTTATGTAGGAACTCGACTTCGTCAAGATGAAGCACAGGATAAAGAGAAAAAGAACTGCCTTGGTGCCATCAAAATCAAAATTGATTTTTATAATTCGGATACAGGGGTAAGAATGTCTTAACATTTACTTTCTTTAACCTCCTTTTGTGTAGCTTCACAAGATTAGTAATTGCTTCACTACATTTTTCCAGCAAGAACGATATGCATCCAAAGACAAGGACTCTCTTATATAAGCTCGGATTAAGTAGAGTTTTCAGCGGGGTCTTTGCGAAGGCCAATGAGCATATTCTAGGAAAGCTACAAAGGGTGGAGCCATATGTGACATATGGGTATGTGAACAGTCATTTTTCTTATATTAGGTCCACTAGATTTCACGCTTCTTTCTCCATGATTTTACTGAAATTTTGGTTGAATTTCAGATACCCTAATCTTAAAAATGTGAGGGAGCTCGTCCATAAGAAGGGATTTGCAAAGATAGACAAACAAAGAGTTCCTCTAACTGACAATAACATCATCGAACAGGTACGACAAACCATCTTAGCTACTCTACTCCCGGGTTGGAAGGACTTTGATAGCATTTGAAAAAGATTTTTTAACTGTCAAAAGTGTTTTTAAGCACATGGCCTTATTCTCTTTTACTTTAATGGTAAATTTCAGGAATTGGGCAAGCATGGAATCCTATGCATGGAGGATATTGTGCATGAAATTGCTAATGTTGGCCCACATTTTAGGGAGGTAATTTCCTTTCTATGGCCTTTTGAACTTGAAAAGCCAGGAAGTGGACTTCAAGGGAAAAAGTCATTGTACAAGGAGGGTGGAGATGCTGGGAATAGAGAGGATGATATCAATGAACTGATTGATGCGATGAATTAGGTTTGAATCAGATCATCATTTGATTTAAAGTTAGGTTTCAAAAAACCTGAAGGGGAACTGATAGTTTCTGTAATTCAATTTTGTTAGTATCATTAGTTTTTATCTTGTTCTACTCATAACTATCAGTTTCTTGACCTATCAGCTTATGAGACTTTTAACTTGTATCCAAGGGCTTGTAATGTGTGGATACAGGAAAATTTTCTGGTGCCACTGTTGTATCTGATCTTTTACCAATTTGGCACAAAACGTTATTAAGTGATATATTTAATTTTATATTATTAGCGCTACAATATTCTTAAATGATGCTATTATGGTAACAGTACCACTGTCGGCTTGATCT

mRNA sequence

ACCCACACCGTCTTCATCTCCTTCTCCCGCAGATCAGTTTCGCCGCCGTCTTTATTCCGATCGTGGTATCGCAGCTTCCCGCGACTTTCTACTCTATTGTCATTACTGGTGACCTACGATGGCGGAAGAGGATCCAAAGCCACTCACATATATACCAGAGGTTATACTGAAGAAGAGAAAGGTCAATGAACTGGCGGCACTGAGAAGAAAGGAACAGTTGGAATTAAGGAAGCTCAATTCGAAGAAAAACAAGGATGGTTTTATTAAGCTGCCTGAAGAATTTGTCAGAGAATATCGTGCTAGAGAACTCGACTTCGTCAAGATGAAGCACAGGATAAAGAGAAAAAGAACTGCCTTGGTGCCATCAAAATCAAAATTGATTTTTATAATTCGGATACAGGGCTTCACAAGATTAGTAATTGCTTCACTACATTTTTCCAGCAAGAACGATATGCATCCAAAGACAAGGACTCTCTTATATAAGCTCGGATTAAGTAGAGTTTTCAGCGGGGTCTTTGCGAAGGCCAATGAGCATATTCTAGGAAAGCTACAAAGGGTGGAGCCATATGTGACATATGGATACCCTAATCTTAAAAATGTGAGGGAGCTCGTCCATAAGAAGGGATTTGCAAAGATAGACAAACAAAGAGTTCCTCTAACTGACAATAACATCATCGAACAGGAATTGGGCAAGCATGGAATCCTATGCATGGAGGATATTGTGCATGAAATTGCTAATGTTGGCCCACATTTTAGGGAGGTAATTTCCTTTCTATGGCCTTTTGAACTTGAAAAGCCAGGAAGTGGACTTCAAGGGAAAAAGTCATTGTACAAGGAGGGTGGAGATGCTGGGAATAGAGAGGATGATATCAATGAACTGATTGATGCGATGAATTAGGTTTGAATCAGATCATCATTTGATTTAAAGTTAGGTTTCAAAAAACCTGAAGGGGAACTGATAGTTTCTGTAATTCAATTTTGTTAGTATCATTAGTTTTTATCTTGTTCTACTCATAACTATCAGTTTCTTGACCTATCAGCTTATGAGACTTTTAACTTGTATCCAAGGGCTTGTAATGTGTGGATACAGGAAAATTTTCTGGTGCCACTGTTGTATCTGATCTTTTACCAATTTGGCACAAAACGTTATTAAGTGATATATTTAATTTTATATTATTAGCGCTACAATATTCTTAAATGATGCTATTATGGTAACAGTACCACTGTCGGCTTGATCT

Coding sequence (CDS)

ATGGCGGAAGAGGATCCAAAGCCACTCACATATATACCAGAGGTTATACTGAAGAAGAGAAAGGTCAATGAACTGGCGGCACTGAGAAGAAAGGAACAGTTGGAATTAAGGAAGCTCAATTCGAAGAAAAACAAGGATGGTTTTATTAAGCTGCCTGAAGAATTTGTCAGAGAATATCGTGCTAGAGAACTCGACTTCGTCAAGATGAAGCACAGGATAAAGAGAAAAAGAACTGCCTTGGTGCCATCAAAATCAAAATTGATTTTTATAATTCGGATACAGGGCTTCACAAGATTAGTAATTGCTTCACTACATTTTTCCAGCAAGAACGATATGCATCCAAAGACAAGGACTCTCTTATATAAGCTCGGATTAAGTAGAGTTTTCAGCGGGGTCTTTGCGAAGGCCAATGAGCATATTCTAGGAAAGCTACAAAGGGTGGAGCCATATGTGACATATGGATACCCTAATCTTAAAAATGTGAGGGAGCTCGTCCATAAGAAGGGATTTGCAAAGATAGACAAACAAAGAGTTCCTCTAACTGACAATAACATCATCGAACAGGAATTGGGCAAGCATGGAATCCTATGCATGGAGGATATTGTGCATGAAATTGCTAATGTTGGCCCACATTTTAGGGAGGTAATTTCCTTTCTATGGCCTTTTGAACTTGAAAAGCCAGGAAGTGGACTTCAAGGGAAAAAGTCATTGTACAAGGAGGGTGGAGATGCTGGGAATAGAGAGGATGATATCAATGAACTGATTGATGCGATGAATTAG

Protein sequence

MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYRARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLLYKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPLTDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKEGGDAGNREDDINELIDAMN

Homology

[Close]

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot
Match: Q9SAI5 (60S ribosomal protein L7-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7A PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 3.1e-70
Identity = 143/260 (55.00%), Postives = 181/260 (69.62%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEE+ K L YIPE++LKKRK  +  A  RK+QLEL     KK K   IK PE+FV E+R
Sbjct: 1   MAEEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFR 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           A+E+D ++MK R+KR +++  P KS L+FIIRIQG             KNDMHPKT+ +L
Sbjct: 61  AKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQG-------------KNDMHPKTKRIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L  VF+GVFAKA + +  KL +V+PYVTYGYPN K+V++L++KKG   I+   VPL
Sbjct: 121 NNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKP-GSGLQGKKSLYK 240
           TDNNIIEQ LG+H IL +ED+V+EIA VG HFREV+ FL P +L KP    L  KK ++ 
Sbjct: 181 TDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFS 240

Query: 241 EGGDAGNREDDINELIDAMN 260
           EGGD GNRED IN+LI  MN
Sbjct: 241 EGGDTGNREDKINDLISKMN 247

[Close]

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot
Match: P60040 (60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.6e-61
Identity = 118/248 (47.58%), Postives = 169/248 (68.15%), Query Frame = 0


Query: 12  IPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYRARELDFVKMKH 71
           +PE +LKKRK  E  AL +K+ +E  K  + +N+    K  E++ +EY  +E + + +K 
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67

Query: 72  RIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLLYKLGLSRVFSG 131
             K K    V  ++KL+FIIRI+G              N + PKT+ +L  L L ++F+G
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKILQLLRLRQIFNG 127

Query: 132 VFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPLTDNNIIEQELG 191
           VF K N+  +  L+RVEPYVTYG+PNLK+V+EL++K+G+ K++ QR+ LTDN+I+EQ LG
Sbjct: 128 VFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALG 187

Query: 192 KHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKEGGDAGNREDDI 251
           KHGI+C ED++HEI  VGPHF+E  +FLWPF+L+ P  GL+ K++ Y EGGDAGNRE+ I
Sbjct: 188 KHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 242

Query: 252 NELIDAMN 260
           NELI  MN
Sbjct: 248 NELIRRMN 242

[Close]

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot
Match: Q9LHP1 (60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.8e-61
Identity = 119/259 (45.95%), Postives = 175/259 (67.57%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           M E + K  T +PE +LKKRK  E  AL +K++LE  K  + + +       +++ +EY+
Sbjct: 1   MTEAESK--TVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQ 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
            +E + +++K   K K    V  ++KL+FIIRI+G              N + PKT+ +L
Sbjct: 61  EKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L ++F+GVF K N+  +  L+RVEPYVTYGYPNLK+V+EL++K+GF K++ QR  L
Sbjct: 121 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTAL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDN+I++Q LGKHGI+C+ED++HEI  VGPHF+E  +FLWPF+L+ P  G++ K++ Y E
Sbjct: 181 TDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNRE+ INEL+  MN
Sbjct: 241 GGDAGNRENFINELVRRMN 244

[Close]

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot
Match: P60039 (60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 7.1e-59
Identity = 114/248 (45.97%), Postives = 168/248 (67.74%), Query Frame = 0


Query: 12  IPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYRARELDFVKMKH 71
           +PE +LKK K  E  AL +K++    K  S + +    K  E++ +EY  ++ + +++K 
Sbjct: 8   VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67

Query: 72  RIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLLYKLGLSRVFSG 131
             K K    V  ++KL+FIIRI+G              N + PKT+ +L  L L ++F+G
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKILQLLRLRQIFNG 127

Query: 132 VFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPLTDNNIIEQELG 191
           VF K N+  +  L+RVEPYVTYGYPNLK+V+EL++K+G+ K++ QR+ LTDN+I++Q LG
Sbjct: 128 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALG 187

Query: 192 KHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKEGGDAGNREDDI 251
           KHGI+C+ED++HEI  VGPHF+E  +FLWPF+L+ P  GL+ K++ Y EGGDAGNRE+ I
Sbjct: 188 KHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 242

Query: 252 NELIDAMN 260
           NEL+  MN
Sbjct: 248 NELVRRMN 242

[Close]

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot
Match: Q7SBD5 (60S ribosomal protein L7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 209.9 bits (533), Expect = 3.4e-53
Identity = 107/249 (42.97%), Postives = 164/249 (65.86%), Query Frame = 0


Query: 12  IPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYRARELDFVKMKH 71
           +PE +LKKRK  E A   R+ ++E +K  +K+ +    K  E +V+EYR  E + ++++ 
Sbjct: 13  VPETLLKKRKSQEKARAERQAEIEKKKAANKEKRAVIFKRAETYVKEYRDVEREKIRLQR 72

Query: 72  RIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLLYKLGLSRVFSG 131
             K+  +  +P+++KLIF+IRI+G              N + PK R +L  L L ++ +G
Sbjct: 73  AAKQDGSFHIPAEAKLIFLIRIKGI-------------NKIPPKPRKILQLLRLLQINNG 132

Query: 132 VFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPLTDNNIIEQELG 191
           VF +  +     ++ VEP+V YGYPNLK+V+EL++K+G+ K++KQRV LTDN+IIE+ LG
Sbjct: 133 VFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLG 192

Query: 192 KHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKK-SLYKEGGDAGNREDD 251
           K+GI+CMED++HEI  VGP+F++  +FLWPF+L  P  G + +K   + EGGD GNRE+ 
Sbjct: 193 KYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEH 248

Query: 252 INELIDAMN 260
           IN LI  MN
Sbjct: 253 INALIRQMN 248

[Close]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL
Match: A0A6J1FYF0 (60S ribosomal protein L7-1-like OS=Cucurbita moschata OX=3662 GN=LOC111448566 PE=3 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.5e-132
Identity = 246/259 (94.98%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR
Sbjct: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQG             KNDMHPKTRTLL
Sbjct: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQG-------------KNDMHPKTRTLL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
           YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL
Sbjct: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE
Sbjct: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNREDDINELIDAMN
Sbjct: 241 GGDAGNREDDINELIDAMN 246

[Close]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL
Match: A0A6J1I831 (60S ribosomal protein L7-1-like OS=Cucurbita maxima OX=3661 GN=LOC111470044 PE=3 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.1e-130
Identity = 242/259 (93.44%), Postives = 246/259 (94.98%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MA+EDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR
Sbjct: 1   MADEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQG             KNDMHPKTR+LL
Sbjct: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQG-------------KNDMHPKTRSLL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
           YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL
Sbjct: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDNNIIEQELGKHGILCMEDIVHEIANVGPHF+EVISFLWPFELEKPGSGLQGKKSLYKE
Sbjct: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFKEVISFLWPFELEKPGSGLQGKKSLYKE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNREDDIN+LIDAMN
Sbjct: 241 GGDAGNREDDINDLIDAMN 246

[Close]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL
Match: A0A5D3E729 (60S ribosomal protein L7-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003720 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.0e-116
Identity = 217/261 (83.14%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEEDPKPL YIPE+ILKKRKVNE AALRRKEQLELRKL+SKKNKDGFIKLPEEFVREYR
Sbjct: 3   MAEEDPKPLAYIPEIILKKRKVNEAAALRRKEQLELRKLSSKKNKDGFIKLPEEFVREYR 62

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           ARELD VKMKHR KRKR+A+VPSKS+LIFIIRIQG             KNDMHPKTR +L
Sbjct: 63  ARELDLVKMKHRTKRKRSAIVPSKSQLIFIIRIQG-------------KNDMHPKTRKIL 122

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
           Y LGLSR+FS VFAKANE +LGKLQRVEPYVTYGYPNLKNVRELV+KKGFAKIDKQRVPL
Sbjct: 123 YNLGLSRIFSAVFAKANESVLGKLQRVEPYVTYGYPNLKNVRELVYKKGFAKIDKQRVPL 182

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSG--LQGKKSLY 240
           TDNNIIEQ LGKHGI+C+ED+V+EIANVGPHF+EVISFLWPFELEKPG G  LQGKKS Y
Sbjct: 183 TDNNIIEQALGKHGIVCVEDMVYEIANVGPHFKEVISFLWPFELEKPGGGGCLQGKKSSY 242

Query: 241 KEGGDAGNREDDINELIDAMN 260
           K+GGDAGNREDDIN+LI+ MN
Sbjct: 243 KDGGDAGNREDDINDLINEMN 250

[Close]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL
Match: A0A1S3CPC0 (60S ribosomal protein L7-1 OS=Cucumis melo OX=3656 GN=LOC103503275 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 5.0e-116
Identity = 217/261 (83.14%), Postives = 234/261 (89.66%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEEDPKPL YIPE+ILKKRKVNE AALRRKEQLELRKL+SKKNKDGFIKLPEEFVREYR
Sbjct: 3   MAEEDPKPLAYIPEIILKKRKVNEAAALRRKEQLELRKLSSKKNKDGFIKLPEEFVREYR 62

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           ARELD VKMKHR KRKR+A+VPSKS+LIFIIRIQG             KNDMHPKTR +L
Sbjct: 63  ARELDLVKMKHRTKRKRSAIVPSKSQLIFIIRIQG-------------KNDMHPKTRKIL 122

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
           Y LGLSR+FS VFAKANE +LGKLQRVEPYVTYGYPNLKNVRELV+KKGFAKIDKQRVPL
Sbjct: 123 YNLGLSRIFSAVFAKANESVLGKLQRVEPYVTYGYPNLKNVRELVYKKGFAKIDKQRVPL 182

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSG--LQGKKSLY 240
           TDNNIIEQ LGKHGI+C+ED+V+EIANVGPHF+EVISFLWPFELEKPG G  LQGKKS Y
Sbjct: 183 TDNNIIEQALGKHGIVCVEDMVYEIANVGPHFKEVISFLWPFELEKPGGGGCLQGKKSSY 242

Query: 241 KEGGDAGNREDDINELIDAMN 260
           K+GGDAGNREDDIN+LI+ MN
Sbjct: 243 KDGGDAGNREDDINDLINEMN 250

[Close]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL
Match: A0A6J1DN17 (60S ribosomal protein L7-1-like OS=Momordica charantia OX=3673 GN=LOC111021521 PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.5e-115
Identity = 215/260 (82.69%), Postives = 232/260 (89.23%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEEDPKPL YIPEVILKKRK+NE  ALRRK+QLELRKL+SKKNKDGFIKLPEEFVREYR
Sbjct: 1   MAEEDPKPLAYIPEVILKKRKINEETALRRKQQLELRKLSSKKNKDGFIKLPEEFVREYR 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           ARELD VKMKHR KRKR ALVPS S+LIFIIRIQG             KNDMHPKTR +L
Sbjct: 61  ARELDLVKMKHRTKRKRHALVPSNSRLIFIIRIQG-------------KNDMHPKTRKIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
           YKLGLSR+FS VFAKANE ILGKLQRVEPYVTYGYPNLKNV EL++KKGFAKIDKQ+VP+
Sbjct: 121 YKLGLSRIFSAVFAKANESILGKLQRVEPYVTYGYPNLKNVSELIYKKGFAKIDKQKVPI 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKP-GSGLQGKKSLYK 240
           TDNNIIEQ LGKHGILCMEDIVH+IANVGPHF+EVISFLWPFEL+KP G GLQGKK+LYK
Sbjct: 181 TDNNIIEQALGKHGILCMEDIVHQIANVGPHFKEVISFLWPFELDKPGGGGLQGKKTLYK 240

Query: 241 EGGDAGNREDDINELIDAMN 260
           +GGDAGNREDDIN+LI+ MN
Sbjct: 241 DGGDAGNREDDINDLINEMN 247

[Close]

BLAST of CmoCh06G000570 vs. TAIR 10
Match: AT1G80750.1 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-71
Identity = 143/260 (55.00%), Postives = 181/260 (69.62%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           MAEE+ K L YIPE++LKKRK  +  A  RK+QLEL     KK K   IK PE+FV E+R
Sbjct: 1   MAEEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFR 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
           A+E+D ++MK R+KR +++  P KS L+FIIRIQG             KNDMHPKT+ +L
Sbjct: 61  AKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQG-------------KNDMHPKTKRIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L  VF+GVFAKA + +  KL +V+PYVTYGYPN K+V++L++KKG   I+   VPL
Sbjct: 121 NNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKP-GSGLQGKKSLYK 240
           TDNNIIEQ LG+H IL +ED+V+EIA VG HFREV+ FL P +L KP    L  KK ++ 
Sbjct: 181 TDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFS 240

Query: 241 EGGDAGNREDDINELIDAMN 260
           EGGD GNRED IN+LI  MN
Sbjct: 241 EGGDTGNREDKINDLISKMN 247

[Close]

BLAST of CmoCh06G000570 vs. TAIR 10
Match: AT2G01250.1 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-62
Identity = 118/248 (47.58%), Postives = 169/248 (68.15%), Query Frame = 0


Query: 12  IPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYRARELDFVKMKH 71
           +PE +LKKRK  E  AL +K+ +E  K  + +N+    K  E++ +EY  +E + + +K 
Sbjct: 8   VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67

Query: 72  RIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLLYKLGLSRVFSG 131
             K K    V  ++KL+FIIRI+G              N + PKT+ +L  L L ++F+G
Sbjct: 68  EAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKILQLLRLRQIFNG 127

Query: 132 VFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPLTDNNIIEQELG 191
           VF K N+  +  L+RVEPYVTYG+PNLK+V+EL++K+G+ K++ QR+ LTDN+I+EQ LG
Sbjct: 128 VFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALG 187

Query: 192 KHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKEGGDAGNREDDI 251
           KHGI+C ED++HEI  VGPHF+E  +FLWPF+L+ P  GL+ K++ Y EGGDAGNRE+ I
Sbjct: 188 KHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 242

Query: 252 NELIDAMN 260
           NELI  MN
Sbjct: 248 NELIRRMN 242

[Close]

BLAST of CmoCh06G000570 vs. TAIR 10
Match: AT3G13580.3 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-62
Identity = 119/259 (45.95%), Postives = 175/259 (67.57%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           M E + K  T +PE +LKKRK  E  AL +K++LE  K  + + +       +++ +EY+
Sbjct: 1   MTEAESK--TVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQ 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
            +E + +++K   K K    V  ++KL+FIIRI+G              N + PKT+ +L
Sbjct: 61  EKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L ++F+GVF K N+  +  L+RVEPYVTYGYPNLK+V+EL++K+GF K++ QR  L
Sbjct: 121 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTAL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDN+I++Q LGKHGI+C+ED++HEI  VGPHF+E  +FLWPF+L+ P  G++ K++ Y E
Sbjct: 181 TDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNRE+ INEL+  MN
Sbjct: 241 GGDAGNRENFINELVRRMN 244

[Close]

BLAST of CmoCh06G000570 vs. TAIR 10
Match: AT3G13580.2 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-62
Identity = 119/259 (45.95%), Postives = 175/259 (67.57%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           M E + K  T +PE +LKKRK  E  AL +K++LE  K  + + +       +++ +EY+
Sbjct: 1   MTEAESK--TVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQ 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
            +E + +++K   K K    V  ++KL+FIIRI+G              N + PKT+ +L
Sbjct: 61  EKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L ++F+GVF K N+  +  L+RVEPYVTYGYPNLK+V+EL++K+GF K++ QR  L
Sbjct: 121 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTAL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDN+I++Q LGKHGI+C+ED++HEI  VGPHF+E  +FLWPF+L+ P  G++ K++ Y E
Sbjct: 181 TDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNRE+ INEL+  MN
Sbjct: 241 GGDAGNRENFINELVRRMN 244

[Close]

BLAST of CmoCh06G000570 vs. TAIR 10
Match: AT3G13580.1 (Ribosomal protein L30/L7 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-62
Identity = 119/259 (45.95%), Postives = 175/259 (67.57%), Query Frame = 0


Query: 1   MAEEDPKPLTYIPEVILKKRKVNELAALRRKEQLELRKLNSKKNKDGFIKLPEEFVREYR 60
           M E + K  T +PE +LKKRK  E  AL +K++LE  K  + + +       +++ +EY+
Sbjct: 1   MTEAESK--TVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQ 60

Query: 61  ARELDFVKMKHRIKRKRTALVPSKSKLIFIIRIQGFTRLVIASLHFSSKNDMHPKTRTLL 120
            +E + +++K   K K    V  ++KL+FIIRI+G              N + PKT+ +L
Sbjct: 61  EKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGI-------------NAIDPKTKKIL 120

Query: 121 YKLGLSRVFSGVFAKANEHILGKLQRVEPYVTYGYPNLKNVRELVHKKGFAKIDKQRVPL 180
             L L ++F+GVF K N+  +  L+RVEPYVTYGYPNLK+V+EL++K+GF K++ QR  L
Sbjct: 121 QLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTAL 180

Query: 181 TDNNIIEQELGKHGILCMEDIVHEIANVGPHFREVISFLWPFELEKPGSGLQGKKSLYKE 240
           TDN+I++Q LGKHGI+C+ED++HEI  VGPHF+E  +FLWPF+L+ P  G++ K++ Y E
Sbjct: 181 TDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVE 240

Query: 241 GGDAGNREDDINELIDAMN 260
           GGDAGNRE+ INEL+  MN
Sbjct: 241 GGDAGNRENFINELVRRMN 244

The following BLAST results are available for this feature:

BLAST of CmoCh06G000570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAI5	3.1e-70	55.00	60S ribosomal protein L7-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7A PE=2 SV=1	[more]
P60040	2.6e-61	47.58	60S ribosomal protein L7-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7B PE=1 SV=1	[more]
Q9LHP1	5.8e-61	45.95	60S ribosomal protein L7-4 OS=Arabidopsis thaliana OX=3702 GN=RPL7D PE=2 SV=1	[more]
P60039	7.1e-59	45.97	60S ribosomal protein L7-3 OS=Arabidopsis thaliana OX=3702 GN=RPL7C PE=2 SV=1	[more]
Q7SBD5	3.4e-53	42.97	60S ribosomal protein L7 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / ...	[more]

BLAST of CmoCh06G000570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYF0	6.5e-132	94.98	60S ribosomal protein L7-1-like OS=Cucurbita moschata OX=3662 GN=LOC111448566 PE...	[more]
A0A6J1I831	2.1e-130	93.44	60S ribosomal protein L7-1-like OS=Cucurbita maxima OX=3661 GN=LOC111470044 PE=3...	[more]
A0A5D3E729	5.0e-116	83.14	60S ribosomal protein L7-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CPC0	5.0e-116	83.14	60S ribosomal protein L7-1 OS=Cucumis melo OX=3656 GN=LOC103503275 PE=3 SV=1	[more]
A0A6J1DN17	2.5e-115	82.69	60S ribosomal protein L7-1-like OS=Momordica charantia OX=3673 GN=LOC111021521 P...	[more]

BLAST of CmoCh06G000570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80750.1	2.2e-71	55.00	Ribosomal protein L30/L7 family protein	[more]
AT2G01250.1	1.8e-62	47.58	Ribosomal protein L30/L7 family protein	[more]
AT3G13580.3	4.1e-62	45.95	Ribosomal protein L30/L7 family protein	[more]
AT3G13580.2	4.1e-62	45.95	Ribosomal protein L30/L7 family protein	[more]
AT3G13580.1	4.1e-62	45.95	Ribosomal protein L30/L7 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	PANTHER	PTHR11524:SF36	60S RIBOSOMAL PROTEIN L7-1	coord: 3..259
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 87..259 e-value: 1.8E-23 score: 85.0
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 107..259
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 89..151 e-value: 6.4E-7 score: 29.2
IPR012988	Ribosomal protein L30, N-terminal	PFAM	PF08079	Ribosomal_L30_N	coord: 13..82 e-value: 6.7E-10 score: 39.1
IPR005998	Ribosomal protein L7, eukaryotic	TIGRFAM	TIGR01310	TIGR01310	coord: 13..259 e-value: 9.3E-82 score: 272.1
IPR039699	Ribosomal protein L7/L30	PANTHER	PTHR11524	60S RIBOSOMAL PROTEIN L7	coord: 3..259
IPR035808	Ribosomal protein L7, eukaryotic/archaeal	CDD	cd01657	Ribosomal_L7_archeal_euk	coord: 87..259 e-value: 5.63342E-71 score: 213.157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000570.1	CmoCh06G000570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome