CmoCh06G000320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein sym-1-like
Location	Cmo_Chr06: 220928 .. 224461 (-)
RNA-Seq Expression	CmoCh06G000320
Synteny	CmoCh06G000320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCCGTGGCGCCACTCTTTCTCTTCAACATCCTCCCCTTTGTACTCGCTCCGCCTTTAATGGGGGACCCTCCTTACGCTTCGGCCTCCAAGCCCGAAGCCTTGAAACCCCAGTTCAAATCAAGGGTACTCATGCCTGTTCTTTCTCCCATAGTCACCGATTGGAGTTTAAGGTTGTGGGTCGGCGTCAAATGCAATGTGGGTCGCTGAGATTTACGAATTTCCGGATTTCGGCATCCTCTGGCGATGGTTTTGGCTCTGGGGGTGGCGGTGATGGATATGGAGGTTATGGTCGTGAAGATTCTGGAGGCGGTGAAGGGGATAGTGGCAAAGGCGGGGATAACTGGTCCTTCTTGTCTTGGTAATAAATTTCAGTTCAGATTAATTTCATCTCCCTTTTCATCTTTGCATGCATTAAGCCTTTGAATTATTTATCTAAGGTTCCTTCTAACACTTGCAACAGCTGACAATCTGATCGGTGCTTGTAATCACATATGCTTCCTTCTTGTTGAATGCCTATAATGTTTTTCTTACGGCATACTTTCTTGAGATGCACTAATTTATGAGTGACTTGAGCTTCGCCATATCTGAAACTAGTTGCCTCCTGTTGGTCCATTGAAACTAAGCAAGTGTCTCATGATCCAGACTGCTTATGGAACCTTTGTCCACGAAACACTGATCTACCAAGATCCTAAAAATGTCGACCATTCCAATTTTTCTTCATTGATTCCACAGCCCAAAAGCTCCAAGTTTTGCAACTTGCTCACCTTTTCATGTTATTTATTACTTTGGTGGACCTTTGAGAAGTACTGGAGGGAGGATAACCTTAACAAATGCTTCTCTGATCGGTTGGTGACTAGAATCCCCTCATCAAACAAGTGTTATAGTAGGAAAAATGTAAGGGGAAACGTGATGCTTTGTTGGTCAGACACAATTTTTGTTTCTAATGATTGGATATCTACTTGAGGGCTCCCTTTTGGCTCCTTTGAATGAAACTTAACAACGAAGTTTTCAATAGTGAAGTTAGAGTTATAGATGGTACATTCGATAAAGTCTATTGGGTAGGGCTAATCCAGAAAATTGATGCGTAACTCCCTCTAAATACTTAAGAGAACTTTATATATTTGAAACAAACTGATATTATTGTTCTAGTCCTTCTGCAAGTTGCAAACTATTTTGGTGTGTTCTCATGGTAGTATAAACCTCTTGCGACTGAAAGAAGGCTTAAGATTCAAGGCTACAAATTGAGCCTCCTATATCTTCCATTTATGAAAGGAATTAACATAACATACCTATAGATCTTACCCAAGTTTGGCCTTTACTCTTGAGATAACTAAATTGATTAGAGAGATGTCTAGTGCAATTGACGATGGACCACCTCAGAAAGGGGGTGTAGTTCCGACATGAACTTTAAATTTGAGCTATCAAGTACGGCCGAAGGAGAACATTGATCCCACCGTACCGTGTTAGTCTGCGTCAATTGTCATTTGACGTACAATACTCGTCCTTGTTCATATGTAGTCCATCGCCCGTGACAAAAATGGTGGCCGACTTCACTATACTTTCTTGTCATCTGCTGCCATGTTTCTATTCTAAAAAATAAATTAAGATGTGTTCTATTTAGTTCCTGTTGGTATATTGTTTGATTTTCAGCGGAATGCATGTGAGGTAGTGTTTCTTATTGGTTCTGAACCTCTTCCTTTCCTCTTAGCTTCTGTTTACAAGCTTGAATCAGAAATAAGTTCGCCATTCTTTTTCTTGCCTTACAAACTTGATTCTGTGTTATTCCAGGTATTTGTCTCTTCTTGCAAAATACCCTGTTTTGGTGAAATCTGTAACATCTGGGATACTAAATGCTCTGGGAGATTTTATTTGTCAGGTTTGCCTCCTTATCTGCACCAACTTCAATTATATCCATCCTCCAGTACTTCATTGGTGTATGTTTCATAGGGCTTTCCGAACGTTCCGATAGTTAGGGGCATGCTGAATGACCATCTTGGAGATATATGATTTGCTATGAATGTATCTTTTTCTCTATCTTTGGCCTTACTTTCAGCTGGTGCACCGTTTTTCTGGTAAGGACTATTGTACTAAATGTTTGAACATATTCACATAGCTTGTTTTTGAAGACGCACCGTCGGCAGATCTGAAAAGAACGTTCAGATTTTCTCTGTTGGGGCTCGCGTTAGTCGGTCCTGCCTTGCACTTCTGGTATTAATTCAAACTAAAATCTTGAAGCATGTCTCAATTATCTTTTAAAAATGAAGACTCAATTGTAATCCTTCATGAACTATCTTTAGATACTTGTTTGTTTAATGGATGAACACTTATAGGTATTTGTATCTAAGTCAATTGGTGACCCTGCCAGGAGCTTCAGGTGCATTCTTGCGCCTTCTTCTTGATCAGGTAATCCAGCTATTAGAAGTCAGTTCTTAGTACGTAATTTAACTCGACGTCCTGTTTGTTAATGGAATTTAACGATGGCAGTTCGTGTTTACTCCGGTGTTCCTTGGAGCGTTTCTGGCTGGATTACTAACATTGGAAGGGCGACCGTCCCATATTATTCCCAAGCTTCAACAGGTTCCAATTGAACATCTTCTGCTCCAACAAGAGAGAAGCAATCTGTTATTAATTTCAGCCTCAAACTTGTTTTTTTGCTTTGTAGGAATGGTTTTCTTCTGTTGTGGCTAATTGGAAACTCTGGATACCTTTCCAGTTTCTCAACTTCAGATTTGTTCCCCAACAATTCCAGGTATGTAAACATTTTATCCTGTTTCTGTTCTGTTCTTCTTGCACCATTTCGGGATACGGCCCGGTTTCTTCGGCATGCCAGTTGTCGTGCCGTTTTATGAAACGATAGGATTTTAGGAGTTCGAAAGTTTGTGGGAGGAGGTTTGATCCTTTGTCAAACTCCACACCTCCCTTTGAGCTTTGGTGCGTAATGATTTTTTGTAAACACAACAACAATATCTCGATACGTATTGAAAACCATGCCTTTCAAACACAGCACTCGTCTTTATTTCAGGTCCTTGCAGCTAATGTCCTTGCCTTGGCATGGAATGTCATCCTCTCCTTCAAAGCTCACAGAGAGATCGTTACATGATAGGTAAAAAGCTTCATTTGTCGTGGAGTCATGCAACGAAAAGACGGGGAAATAACGAATAATGAAACAATTCATATATTGACATTCCGTGCTAATTTCCTCATTTCTGCTTTCTTATTCCCATCATCCAATAACCACAGGATGATCCACAAGAAAGGTGGTAGGATTCGAACCTATAGCTGGCCCGAAGTCCGTATTTTGGTCAATCTATGATAATTTGTTATAGATTCATTTTTTTTGCCGAATATGTTTTCAGAAATACACAAAAAAAATGCAATATGGAGATTGGATTAGATAGTTGCCTTGTCTCTCTTTCTGTATTCTTAAGCTTTATGAACTTGGTTTTGATCGTTAAATGGCCTACCCGTCATTGCATGCACGTATTAAAGGCTTTAAATTTATGTGTATTTTAAATATTCTACGTCCG

mRNA sequence

ATGGTTCTCCGTGGCGCCACTCTTTCTCTTCAACATCCTCCCCTTTGTACTCGCTCCGCCTTTAATGGGGGACCCTCCTTACGCTTCGGCCTCCAAGCCCGAAGCCTTGAAACCCCAGTTCAAATCAAGGGTACTCATGCCTGTTCTTTCTCCCATAGTCACCGATTGGAGTTTAAGGTTGTGGGTCGGCGTCAAATGCAATGTGGGTCGCTGAGATTTACGAATTTCCGGATTTCGGCATCCTCTGGCGATGGTTTTGGCTCTGGGGGTGGCGGTGATGGATATGGAGGTTATGGTCGTGAAGATTCTGGAGGCGGTGAAGGGGATAGTGGCAAAGGCGGGGATAACTGGTCCTTCTTGTCTTGGTATTTGTCTCTTCTTGCAAAATACCCTGTTTTGGTGAAATCTGTAACATCTGGGATACTAAATGCTCTGGGAGATTTTATTTGTCAGCTTGTTTTTGAAGACGCACCGTCGGCAGATCTGAAAAGAACGTTCAGATTTTCTCTGTTGGGGCTCGCGTTAGTCGGTCCTGCCTTGCACTTCTGGTATTTGTATCTAAGTCAATTGGTGACCCTGCCAGGAGCTTCAGGTGCATTCTTGCGCCTTCTTCTTGATCAGTTCGTGTTTACTCCGGTGTTCCTTGGAGCGTTTCTGGCTGGATTACTAACATTGGAAGGGCGACCGTCCCATATTATTCCCAAGCTTCAACAGGAATGGTTTTCTTCTGTTGTGGCTAATTGGAAACTCTGGATACCTTTCCAGTTTCTCAACTTCAGATTTGTTCCCCAACAATTCCAGGTCCTTGCAGCTAATGTCCTTGCCTTGGCATGGAATGTCATCCTCTCCTTCAAAGCTCACAGAGAGATCGTTACATGATAGGTAAAAAGCTTCATTTGTCGTGGAGTCATGCAACGAAAAGACGGGGAAATAACGAATAATGAAACAATTCATATATTGACATTCCGTGCTAATTTCCTCATTTCTGCTTTCTTATTCCCATCATCCAATAACCACAGGATGATCCACAAGAAAGGTGGTAGGATTCGAACCTATAGCTGGCCCGAAGTCCGTATTTTGGTCAATCTATGATAATTTGTTATAGATTCATTTTTTTTGCCGAATATGTTTTCAGAAATACACAAAAAAAATGCAATATGGAGATTGGATTAGATAGTTGCCTTGTCTCTCTTTCTGTATTCTTAAGCTTTATGAACTTGGTTTTGATCGTTAAATGGCCTACCCGTCATTGCATGCACGTATTAAAGGCTTTAAATTTATGTGTATTTTAAATATTCTACGTCCG

Coding sequence (CDS)

ATGGTTCTCCGTGGCGCCACTCTTTCTCTTCAACATCCTCCCCTTTGTACTCGCTCCGCCTTTAATGGGGGACCCTCCTTACGCTTCGGCCTCCAAGCCCGAAGCCTTGAAACCCCAGTTCAAATCAAGGGTACTCATGCCTGTTCTTTCTCCCATAGTCACCGATTGGAGTTTAAGGTTGTGGGTCGGCGTCAAATGCAATGTGGGTCGCTGAGATTTACGAATTTCCGGATTTCGGCATCCTCTGGCGATGGTTTTGGCTCTGGGGGTGGCGGTGATGGATATGGAGGTTATGGTCGTGAAGATTCTGGAGGCGGTGAAGGGGATAGTGGCAAAGGCGGGGATAACTGGTCCTTCTTGTCTTGGTATTTGTCTCTTCTTGCAAAATACCCTGTTTTGGTGAAATCTGTAACATCTGGGATACTAAATGCTCTGGGAGATTTTATTTGTCAGCTTGTTTTTGAAGACGCACCGTCGGCAGATCTGAAAAGAACGTTCAGATTTTCTCTGTTGGGGCTCGCGTTAGTCGGTCCTGCCTTGCACTTCTGGTATTTGTATCTAAGTCAATTGGTGACCCTGCCAGGAGCTTCAGGTGCATTCTTGCGCCTTCTTCTTGATCAGTTCGTGTTTACTCCGGTGTTCCTTGGAGCGTTTCTGGCTGGATTACTAACATTGGAAGGGCGACCGTCCCATATTATTCCCAAGCTTCAACAGGAATGGTTTTCTTCTGTTGTGGCTAATTGGAAACTCTGGATACCTTTCCAGTTTCTCAACTTCAGATTTGTTCCCCAACAATTCCAGGTCCTTGCAGCTAATGTCCTTGCCTTGGCATGGAATGTCATCCTCTCCTTCAAAGCTCACAGAGAGATCGTTACATGA

Protein sequence

MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKVVGRRQMQCGSLRFTNFRISASSGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDNWSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT

Homology

[Close]

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot
Match: Q2KIY1 (Peroxisomal membrane protein 2 OS=Bos taurus OX=9913 GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 63/171 (36.84%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 120 LSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFED------APSADLKRTFRFSLLGL 179
           LS YL LL  YPVL K+ TSGIL+ALG+F+ QL+ +       +   D+    R+++ G 
Sbjct: 22  LSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGF 81

Query: 180 ALVGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGR-PSHI 239
              GP  HF+YL + + +          RLLLD+ +F P FL  F   +  LEG+  +  
Sbjct: 82  FFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQDTAAF 141

Query: 240 IPKLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILS 284
             K++  ++ ++  NW++W P QF+N  ++P QF+VL AN++AL W   L+
Sbjct: 142 AAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLA 192

[Close]

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot
Match: Q9NR77 (Peroxisomal membrane protein 2 OS=Homo sapiens OX=9606 GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-24
Identity = 65/181 (35.91%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 109 DSGKGGDNWSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLV-----FEDAPSADLK 168
           ++G G      L+ YL  L  YPVL K+ TSGIL+ALG+F+ Q++      E++ S D+ 
Sbjct: 11  EAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVG 70

Query: 169 RTFRFSLLGLALVGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLL 228
              R+++ G    GP  HF+Y ++   +          RLLLD+ VF P FL  F   + 
Sbjct: 71  GPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMN 130

Query: 229 TLEGR-PSHIIPKLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVIL 284
            LEG+  S    K++  ++ ++  NW++W P QF+N  +VP +F+VL AN+ AL W   L
Sbjct: 131 FLEGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190

[Close]

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot
Match: P42925 (Peroxisomal membrane protein 2 OS=Mus musculus OX=10090 GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 6.4e-24
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 120 LSWYLSLLAKYPVLVKSVTSGILNALGDFICQLV----FEDAPSADLKRTFRFSLLGLAL 179
           L+ YL LL  YPVL K+V+SGIL+ALG+ + Q +     +D+   ++    R+ + GL +
Sbjct: 22  LAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFV 81

Query: 180 VGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGR-PSHIIP 239
            GP  H+ YL++   V       +  RLLLD+  F P FL  F   +  LEG+  S  + 
Sbjct: 82  TGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLLEGKNVSVFVA 141

Query: 240 KLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILS 284
           K++  ++ ++  NW++W P QF+N  +VP QF+VL AN+ AL W   L+
Sbjct: 142 KMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLA 190

[Close]

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot
Match: Q07066 (Peroxisomal membrane protein 2 OS=Rattus norvegicus OX=10116 GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-24
Identity = 62/169 (36.69%), Postives = 98/169 (57.99%), Query Frame = 0


Query: 120 LSWYLSLLAKYPVLVKSVTSGILNALGDFICQLV----FEDAPSADLKRTFRFSLLGLAL 179
           L+ YL  L  YPV+ K+V+SGIL+ALG+ + Q++     +D+ S ++    R+ + GL +
Sbjct: 22  LAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFV 81

Query: 180 VGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRP-SHIIP 239
            GP  H+ YL++   V          RLLLD+  F P FL  F   +  LEG+  S  + 
Sbjct: 82  TGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEGKNISVFVA 141

Query: 240 KLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILS 284
           K++  ++ ++  NW++W P QF+N  +VP QF+VL AN+ AL W   L+
Sbjct: 142 KMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLA 190

[Close]

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot
Match: Q4IPX8 (Protein SYM1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=SYM1 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-24
Identity = 61/171 (35.67%), Postives = 96/171 (56.14%), Query Frame = 0


Query: 118 SFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFE--DAPSADLKRTFRFSLLGLAL 177
           SF+ WY S LA  P+L +SVT+  L A GD   Q + E   A   DL RT R +L G  +
Sbjct: 3   SFIRWYNSRLAARPLLTQSVTTAFLFATGDVTAQQLVEKRGAQKHDLVRTGRMALYGGFV 62

Query: 178 VGPALHFWYLYLSQLVTLPGASGA--FLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHII 237
            GP    W+ +L++ V +     A    R+  DQ  F PV +G FL+ + T+EG+   + 
Sbjct: 63  FGPVATTWFAFLARRVNVRNNKKAEVLARVACDQLGFAPVMIGVFLSSMATMEGK--SVK 122

Query: 238 PKLQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSF 285
            ++ + W+ ++ ANW +W   Q +NF  +P Q+++  AN++A+ WN  LS+
Sbjct: 123 ERIDKTWWPALKANWMVWPAVQVINFSLIPLQYRLFFANIIAIGWNSYLSW 171

[Close]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL
Match: A0A6J1FCF7 (protein sym-1-like OS=Cucurbita moschata OX=3662 GN=LOC111444129 PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 6.8e-162
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0


Query: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60
           MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV
Sbjct: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60

Query: 61  VGRRQMQCGSLRFTNFRISASSGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDNWSFL 120
           VGRRQMQCGSLRFTNFRISASSGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDNWSFL
Sbjct: 61  VGRRQMQCGSLRFTNFRISASSGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDNWSFL 120

Query: 121 SWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPAL 180
           SWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPAL
Sbjct: 121 SWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPAL 180

Query: 181 HFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKLQQEW 240
           HFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKLQQEW
Sbjct: 181 HFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKLQQEW 240

Query: 241 FSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 293
           FSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT
Sbjct: 241 FSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 292

[Close]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL
Match: A0A6J1I1Z8 (protein SYM1-like OS=Cucurbita maxima OX=3661 GN=LOC111470168 PE=3 SV=1)

HSP 1 Score: 559.7 bits (1441), Expect = 7.3e-156
Identity = 285/295 (96.61%), Postives = 286/295 (96.95%), Query Frame = 0


Query: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60
           MVLRGATLSLQHPPLCTRS FNGGPSLRFGLQARSL+TPVQIKGTHACSFSHSHRLEFKV
Sbjct: 1   MVLRGATLSLQHPPLCTRSTFNGGPSLRFGLQARSLKTPVQIKGTHACSFSHSHRLEFKV 60

Query: 61  VGRRQMQCGSLRFTNFRISAS----SGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDN 120
           VGRRQMQCGSLRFTNFRISAS    SGDGFGSGGG DGYGGYGREDSGGGEGDSGKGGDN
Sbjct: 61  VGRRQMQCGSLRFTNFRISASSGDGSGDGFGSGGGSDGYGGYGREDSGGGEGDSGKGGDN 120

Query: 121 WSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALV 180
           WSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGL LV
Sbjct: 121 WSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLVLV 180

Query: 181 GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKL 240
           GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGR SHIIPKL
Sbjct: 181 GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRRSHIIPKL 240

Query: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIV 292
           QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAAN LALAWNVILSFKAHREIV
Sbjct: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANFLALAWNVILSFKAHREIV 295

[Close]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL
Match: A0A6J1DGH9 (protein sym-1 OS=Momordica charantia OX=3673 GN=LOC111019867 PE=3 SV=1)

HSP 1 Score: 488.0 bits (1255), Expect = 2.7e-134
Identity = 248/293 (84.64%), Postives = 266/293 (90.78%), Query Frame = 0


Query: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60
           MVL G TLSL+ PPLCTRS+ N GP+L FGLQA SLETPVQ+KG  ACSF H+HRLEF+ 
Sbjct: 1   MVLCGVTLSLKPPPLCTRSSSNRGPTLHFGLQAPSLETPVQMKGPLACSFRHNHRLEFED 60

Query: 61  VGRRQMQCGSLRFTNFRISASSGDGFGSG-GGGDGYGGYGREDSGGGEGDSGKGGDNWSF 120
           +GR QMQCGSLRFTN RISASSGDG GSG G G G GGYG E+ GGGEGD GKGG +WSF
Sbjct: 61  LGRLQMQCGSLRFTNLRISASSGDGSGSGSGSGGGDGGYGGENYGGGEGDGGKGGKDWSF 120

Query: 121 LSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPA 180
           LSWYL+LLAKYPVLVKSVTSGILN LGD ICQLVFE +PSADLKRTFRFSLLGLALVGPA
Sbjct: 121 LSWYLALLAKYPVLVKSVTSGILNGLGDLICQLVFEKSPSADLKRTFRFSLLGLALVGPA 180

Query: 181 LHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKLQQE 240
           LH+WYLYLS+LVT+PGASGAFLRLLLDQF+FTPVFLGAFL GL+TLEGRPSH+IPKLQQE
Sbjct: 181 LHYWYLYLSKLVTMPGASGAFLRLLLDQFIFTPVFLGAFLTGLVTLEGRPSHVIPKLQQE 240

Query: 241 WFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 293
           WFSSVVANWKLWIPFQF NFRFVPQQFQVLAANVLALAWNVILSFKAHREI+T
Sbjct: 241 WFSSVVANWKLWIPFQFFNFRFVPQQFQVLAANVLALAWNVILSFKAHREIIT 293

[Close]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL
Match: A0A1S3B718 (protein SYM1 OS=Cucumis melo OX=3656 GN=LOC103486861 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.6e-134
Identity = 246/296 (83.11%), Postives = 266/296 (89.86%), Query Frame = 0


Query: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60
           MV  G TLSL+ P LCTR +FNGG    FGLQA  LETPVQ+KGT  CSF H+HRLEF  
Sbjct: 1   MVPCGLTLSLKPPILCTRISFNGGHISAFGLQAPILETPVQMKGTRVCSFRHNHRLEFND 60

Query: 61  VGRRQMQCGSLRFTNFRISAS----SGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDN 120
           VGRRQMQCGSLRFT+FRISAS    SGDGFGSG G  G+GGYG E+SGGGEGDSGK G+N
Sbjct: 61  VGRRQMQCGSLRFTDFRISASSGDGSGDGFGSGAGDGGHGGYGHENSGGGEGDSGKSGNN 120

Query: 121 WSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALV 180
           WSFLSWYL+LLAKYP LVKS+TSGILNALGD ICQ+VFE+APSADL+RTFRFSLLGL LV
Sbjct: 121 WSFLSWYLTLLAKYPALVKSITSGILNALGDLICQIVFEEAPSADLRRTFRFSLLGLVLV 180

Query: 181 GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKL 240
           GPALHFWYLYLSQLVTLPGASGAF+RLLLDQF+FTPVFLG FL+GL+TLEGRPSHIIPKL
Sbjct: 181 GPALHFWYLYLSQLVTLPGASGAFVRLLLDQFIFTPVFLGVFLSGLVTLEGRPSHIIPKL 240

Query: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 293
           QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAAN+LALAWNVILSFKAH+EI+T
Sbjct: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANILALAWNVILSFKAHKEIIT 296

[Close]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL
Match: A0A5D3DPM1 (Protein SYM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006390 PE=3 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 4.6e-134
Identity = 246/296 (83.11%), Postives = 266/296 (89.86%), Query Frame = 0


Query: 1   MVLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV 60
           MV  G TLSL+ P LCTR +FNGG    FGLQA  LETPVQ+KGT  CSF H+HRLEF  
Sbjct: 1   MVPCGLTLSLKPPILCTRISFNGGHISAFGLQAPILETPVQMKGTRVCSFRHNHRLEFND 60

Query: 61  VGRRQMQCGSLRFTNFRISAS----SGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGDN 120
           VGRRQMQCGSLRFT+FRISAS    SGDGFGSG G  G+GGYG E+SGGGEGDSGK G+N
Sbjct: 61  VGRRQMQCGSLRFTDFRISASSGDGSGDGFGSGAGDGGHGGYGHENSGGGEGDSGKSGNN 120

Query: 121 WSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALV 180
           WSFLSWYL+LLAKYP LVKS+TSGILNALGD ICQ+VFE+APSADL+RTFRFSLLGL LV
Sbjct: 121 WSFLSWYLTLLAKYPALVKSITSGILNALGDLICQIVFEEAPSADLRRTFRFSLLGLVLV 180

Query: 181 GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPKL 240
           GPALHFWYLYLSQLVTLPGASGAF+RLLLDQF+FTPVFLG FL+GL+TLEGRPSHIIPKL
Sbjct: 181 GPALHFWYLYLSQLVTLPGASGAFVRLLLDQFIFTPVFLGVFLSGLVTLEGRPSHIIPKL 240

Query: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 293
           QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAAN+LALAWNVILSFKAH+EI+T
Sbjct: 241 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANILALAWNVILSFKAHKEIIT 296

[Close]

BLAST of CmoCh06G000320 vs. TAIR 10
Match: AT5G19750.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-73
Identity = 154/296 (52.03%), Postives = 193/296 (65.20%), Query Frame = 0


Query: 2   VLRGATLSLQHPPLCTRSAFNGGPSLRFGLQARSLETPVQIKGTHACSFSHSHRLEFKV- 61
           +L   TL+ + P       F+G  S  FG +     T  +   + A SF + +    K  
Sbjct: 1   MLNSITLTRKPPLPFNSVGFSGNHSSSFGRR-----TITEGSSSKALSFGYKNVGSLKCG 60

Query: 62  ----VGRRQMQCGSLRFTNFRISA-SSGDGFGSGGGGDGYGGYGREDSGGGEGDSGKGGD 121
                GR     G L     R+SA   G+  GSGG G   GG G    GGG+G  GK G 
Sbjct: 61  RSNWPGRSGTAFGHL----VRVSAVPGGNSGGSGGLGGSGGGGGGSGGGGGDGSDGK-GK 120

Query: 122 NWSFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLAL 181
            WS LSWY +LL+  PVL K+VT+ +LN +GD ICQL      S D KRT  F+ LGL L
Sbjct: 121 KWSLLSWYQALLSNSPVLTKAVTAALLNLVGDLICQLTINKTSSLDKKRTLTFTFLGLGL 180

Query: 182 VGPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPSHIIPK 241
           VGP LHFWYLYLS++VT  G SGA +RLLLDQFVF P+F+G FL+ ++TLEG+PS++IPK
Sbjct: 181 VGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPK 240

Query: 242 LQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIV 292
           LQQEW  +++ANW+LWIPFQFLNFRFVPQ +QVLA+NV+ALAWNVILSFKAH+E+V
Sbjct: 241 LQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVV 286

[Close]

BLAST of CmoCh06G000320 vs. TAIR 10
Match: AT2G14860.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-20
Identity = 51/173 (29.48%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 119 FLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFE-DAPSADLKRTFRFSLLGLALVG 178
           F+ WYL ++  +PV+ KSVTS ++    D   Q + +  + S DL RT R    GL ++G
Sbjct: 73  FVGWYLGMVKSHPVVTKSVTSSLIYIAADLSSQTIAKTSSESYDLVRTARMGGYGLFVLG 132

Query: 179 PALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEG-RPSHIIPKL 238
           P LH+W+ ++S+L         F ++ + Q ++ P+    F +   +L+G R S I+ +L
Sbjct: 133 PTLHYWFNFMSRLFPKQDLITTFKKMAMGQTIYGPIMTVIFFSLNASLQGERGSVILARL 192

Query: 239 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHRE 290
           +++   ++      W    F+ FRF P   Q L +N  +  W + +++ A+RE
Sbjct: 193 KRDLLPALFNGVMYWPLCDFITFRFFPVHLQPLVSNSFSYVWTIYMTYMANRE 245

[Close]

BLAST of CmoCh06G000320 vs. TAIR 10
Match: AT5G43140.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 92.8 bits (229), Expect = 4.8e-19
Identity = 50/173 (28.90%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 118 SFLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLV-FEDAPSADLKRTFRFSLLGLALV 177
           +FL WYL  L  +P + KS+T+ ++    D   Q++  E   S DL RT R +  GL  +
Sbjct: 77  AFLRWYLRKLESHPFMTKSITTSVIYMAADLTSQMITMEPTGSFDLIRTARMASFGLIFL 136

Query: 178 GPALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEGRPS-HIIPK 237
           GP+ H W+ YLS+++        F ++++ Q +F PV    F +    L+G  S  I+ +
Sbjct: 137 GPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYSYNAALQGENSEEIVAR 196

Query: 238 LQQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHR 289
           L+++   ++      W    F+ F++VP   Q L  +  A  W + L++ A++
Sbjct: 197 LKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWTIYLTYMANQ 249

[Close]

BLAST of CmoCh06G000320 vs. TAIR 10
Match: AT4G33905.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 89.4 bits (220), Expect = 5.4e-18
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 0


Query: 119 FLSWYLSLLAKYPVLVKSVTSGILNALGDFICQLVFE-DAPSADLKRTFRFSLLGLALVG 178
           F+ WYL ++   PVL KSVTS ++    D   Q + +    S DL RT R    GL ++G
Sbjct: 82  FIGWYLGMVKSRPVLTKSVTSSLIYIAADLSSQTIPQASVDSYDLVRTARMGGYGLLILG 141

Query: 179 PALHFWYLYLSQLVTLPGASGAFLRLLLDQFVFTPVFLGAFLAGLLTLEG-RPSHIIPKL 238
           P LH+W+  +S L         F ++ + Q V+ P     F +    L+G   S I+ +L
Sbjct: 142 PTLHYWFNLMSSLFPKRDLITTFKKMAMGQTVYGPAMNVVFFSLNAALQGENGSEIVARL 201

Query: 239 QQEWFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIVT 293
           +++   +++     W    F+ F+F P   Q L +N  +  W + +++ A R   T
Sbjct: 202 KRDLLPTMLNGVMYWPLCDFITFKFCPVYLQPLVSNSFSYLWTIYITYMASRATPT 257

[Close]

BLAST of CmoCh06G000320 vs. TAIR 10
Match: AT4G14305.1 (Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-13
Identity = 48/172 (27.91%), Postives = 88/172 (51.16%), Query Frame = 0


Query: 123 YLSLLAKYPVLVKSVTSGILNALGDFICQLVFEDAPSADLKRTFRFSLLGLALVGPALHF 182
           YL  L  +P+  K++T+G+L    D I Q +         +R     L G A  GP  HF
Sbjct: 12  YLIQLQAHPLRTKAITAGVLAGCSDAIAQKI-SGVKRIQFRRLLLLMLYGFAYGGPFGHF 71

Query: 183 WYLYLSQLVT-LPGASGAFLRLLLDQFVFTPVFLGAFLAGL-LTLEGRPSHIIP-KLQQE 242
           ++  +  +     G S    ++LL+Q   +P     F++   L +EGRP  ++  KL ++
Sbjct: 72  FHKLMDTIFKGKKGNSTVAKKVLLEQLTSSPWNNFLFMSYYGLVVEGRPWKLVKHKLGKD 131

Query: 243 WFSSVVANWKLWIPFQFLNFRFVPQQFQVLAANVLALAWNVILSFKAHREIV 292
           + +  +  WK W    ++N+++VP QF+VL ++ +A  W++ L+ KA   ++
Sbjct: 132 YPTIQLTAWKFWPIVGWVNYQYVPLQFRVLFSSFVASCWSIFLNLKARSPVI 182

The following BLAST results are available for this feature:

BLAST of CmoCh06G000320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KIY1	2.0e-25	36.84	Peroxisomal membrane protein 2 OS=Bos taurus OX=9913 GN=PXMP2 PE=2 SV=3	[more]
Q9NR77	2.9e-24	35.91	Peroxisomal membrane protein 2 OS=Homo sapiens OX=9606 GN=PXMP2 PE=1 SV=3	[more]
P42925	6.4e-24	37.28	Peroxisomal membrane protein 2 OS=Mus musculus OX=10090 GN=Pxmp2 PE=1 SV=2	[more]
Q07066	8.3e-24	36.69	Peroxisomal membrane protein 2 OS=Rattus norvegicus OX=10116 GN=Pxmp2 PE=1 SV=2	[more]
Q4IPX8	8.3e-24	35.67	Protein SYM1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 /...	[more]

BLAST of CmoCh06G000320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCF7	6.8e-162	100.00	protein sym-1-like OS=Cucurbita moschata OX=3662 GN=LOC111444129 PE=3 SV=1	[more]
A0A6J1I1Z8	7.3e-156	96.61	protein SYM1-like OS=Cucurbita maxima OX=3661 GN=LOC111470168 PE=3 SV=1	[more]
A0A6J1DGH9	2.7e-134	84.64	protein sym-1 OS=Momordica charantia OX=3673 GN=LOC111019867 PE=3 SV=1	[more]
A0A1S3B718	4.6e-134	83.11	protein SYM1 OS=Cucumis melo OX=3656 GN=LOC103486861 PE=3 SV=1	[more]
A0A5D3DPM1	4.6e-134	83.11	Protein SYM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006390 ...	[more]

BLAST of CmoCh06G000320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19750.1	9.9e-73	52.03	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT2G14860.1	2.0e-20	29.48	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT5G43140.1	4.8e-19	28.90	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT4G33905.1	5.4e-18	28.98	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]
AT4G14305.1	1.8e-13	27.91	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007248	Mpv17/PMP22	PFAM	PF04117	Mpv17_PMP22	coord: 225..283 e-value: 8.2E-21 score: 74.0
IPR007248	Mpv17/PMP22	PANTHER	PTHR11266	PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17	coord: 113..288
None	No IPR available	PANTHER	PTHR11266:SF80	PEROXISOMAL MEMBRANE PROTEIN 2	coord: 113..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000320.1	CmoCh06G000320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane