CmoCh05G014090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G014090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 10845135 .. 10847709 (+)
RNA-Seq ExpressionCmoCh05G014090
SyntenyCmoCh05G014090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTTCAGGATTTGTTTGGAGGATGTTGCTGCAATATCGAAATATTATTCGAACTATTGTTATATTTTCTCAATCATTGTGGTGGTATTATTTAGTTGGAAAATTTGGTATTCTTGGTTAATTAAGGATTCTGCACTACAATTTGACTGTTATACTTGCCCATTTAACACAGGGACTTGATGGTTGTCTAACTCTGGGGTAGCTGCTATTTTTATAGCCGTGTTGCTGGCTGTGGTACATTACAGACTTCGATGAATCCAACCGCAAAAGAGTTAAAGACGGCAATTGGTAACTACTACGGGTTGTTTAGATTGATTATAGATCGACCAAAAATGGGCAGTTGTAGTGTAATTTAGAAGCCATGTTGGTGGTAGTTTGGCTAAACATAATACGTTTCTATTTTTGTCTGTTTTTCAGCTTGGCACTCCGGTTTTGGGTATACATACACTCCAATTTTCATTCAATTAGACGGGTTAATCTACAATTTGGACCTGGACCAGTATTCTCTCAAGTGGACTTGGGCCCATTTACGCTTATGCCTCCAAGACATGAGGTCAGAATCTTACCGATTCAATTCTCATTCATTTGCCCACTAATTTTAGTATAAGAAGTGTAAAAATCGTGATAACCTCGTTAATTTTAATAAACTAAAAGTTTGCGCAAAAATAACTATTTCTGTGTTATTTTTTCTTCTTTGATTGATTAATAAATCTCTCAAATAAAATAGTTTCCAACTAATTTGCAAACCCATAGTACAAAATTCATTATTTTGAATTCTGAAAAGTGTTTCTTAAAGTCTTTTATATATTTATGTAGAAAACAAATTTAAGAAAATAATTATTTAGTATAAACATATTTTAAAATAGTTGAAGAAAACACATTAAAAAGCAACAGATCGATCCTGGTTTTTTTTTTTCTTAAATAAAAAAAAATTCTTGTTCTTTGTTTATTTTGAAATTGGTATATAGAAATGAAAGAAAAATGATTTATACCCCTAAATTTGACCTGTTGAATCAATTACAACTCTAAACTATTAATTGTATCAAGTTCAAGACTTTCATAATTGAACCAAACCTATTATGGAATTTTTTTTAAACGAGTAGGGATTTCCATCCAAATGAGTTTATTTTTTTAAAAAAATTCTTTTTTAGGGAAGACTTAAATGGCTTTACTATTAGAAACTTAAATGAGGTGACCAAAAATGCACCCTACGCCCAAGACAAAGGGTTTAAGTTTCCTGCCTGTCTACAGCTTTCCATTACTCATTACAGGCAATGGCATTGTCATATGAAATAGCTTGTTTTGTGCCAATTTTGCATACTACAATCTTCCTCATTTCTGAGAATCTTTCCATGTCGGTTGTTGAGAAACAAACACTCTTCAGTCTCCACTAACATTTGTCTTCCACAGATTTCACCCTCTGCTTCACTGTCCACTCCTAAACTACATATCAACCTTCAGTTCTTCTGTACCACAAGAATCTTCACGGTTTAGTTTTTGCAATCTTTGCCTGTTCCTCCAATTATTTTGACTCACTACCTGTCTCCCCAATTACCTCTTCTTTTCATTTCTTCTGCATCCTTGTCTCCTCTGCTGATCCTTCCAGTTTCTCTTTCTGCAGTGCCCAACATAAACCAGATTTGTTTGTTCAGATGGGAAGTTTTCCATACCTGAAATCATTGTGGATTCTATGATTATCAAAAGCAGGACAAAGCATTCTTGGTGGAATAGTAGCCTGTCTGCGAAGGCAACCAGTTGAATTTGAGTTTCCCCTGTTTTGTCATTTTCCCTTGTTTCAAACCTGTAAAGCCAATCAAACTCAAACAATTAACCAAAACACACACAAAAATCAGTAAACAGAAGGCTCCCCTAAAGAAGATCCAGACTTAGAAGCCAGTGCCACCATCTTCCTTTATGTTACTTTACTTCCATTACTTTCCTCCCTGACTTCTCTTTTGGCAGGAATTCGTCGGGGAAATGTTTGACCATAGCCATGATTTTGCAGCCCTTGCTTCAGAGACACTTCTGTAAGTTTTAAAATCAACAAGTTGGGCAGGTAATTTCAATCACCAAGCACACTCACTCACTGTGGTTAGAACCGGATAGACCCTCTCGAGTCTCAGCTCAACTTTAGCATTTTCTTTTGAACTATTTGTCTTACGCAGTTTCACTCATCCCACTCCAGAACTATTTGTCTAACGCAGTTTTTCATTCATCCCTCTCCTGCAACCCATTGATTCTATTGATCCAGTCCTTGTAGAAGAATCTAAATAGTGGTGTGACTCCTAAACTAATCTTCTGTAGTTCTCTTTAGTATAAATAAAAGTCCCGTTTCTGCCCATAAATAGACATCTCTATTGCTAACAATAACAGGTTCTCTACACTTCTGAATTAGAGAGGGAGGAAGCCCGCACATCTTAATCTCTTCCATTGATATTGACACATGAGGAATTAAAGTTTTACATCCACCATACTACAATACATAGAGGCAACGCCTCTTCAACCAAAATGTAAGACAGAGGGGAAAAAAGCTATTAAAAAATTAAAATCTAACATCCACATATTGTGAAA

mRNA sequence

ATGACCTTTCAGGATTTGTTTGGAGGATGTTGCTGCAATATCGAAATATTATTCGAACTATTGTTATATTTTCTCAATCATTGTGGTGACTTCGATGAATCCAACCGCAAAAGAGTTAAAGACGGCAATTGCTTGGCACTCCGGTTTTGGGTATACATACACTCCAATTTTCATTCAATTAGACGGGTTAATCTACAATTTGGACCTGGACCAGTATTCTCTCAAGTGGACTTGGGCCCATTTACGCTTATGCCTCCAAGACATGAGATTTCACCCTCTGCTTCACTGTCCACTCCTAAACTACATATCAACCTTCAGTTCTTCTGTACCACAAGAATCTTCACGGTTTAGTTTTTGCAATCTTTGCCTGTTCCTCCAATTATTTTGACTCACTACCTGTCTCCCCAATTACCTCTTCTTTTCATTTCTTCTGCATCCTTGTCTCCTCTGCTGATCCTTCCAGTTTCTCTTTCTGCAGTGCCCAACATAAACCAGATTTGTTTGTTCAGATGGGAAGTTTTCCATACCTGAAATCATTGTGGATTCTATGATTATCAAAAGCAGGACAAAGCATTCTTGGTGGAATAGTAGCCTGTCTGCGAAGGCAACCAGTTGAATTTGAGTTTCCCCTGTTTTGTCATTTTCCCTTGTTTCAAACCTGTAAAGCCAATCAAACTCAAACAATTAACCAAAACACACACAAAAATCAGTAAACAGAAGGCTCCCCTAAAGAAGATCCAGACTTAGAAGCCAGTGCCACCATCTTCCTTTATGTTACTTTACTTCCATTACTTTCCTCCCTGACTTCTCTTTTGGCAGGAATTCGTCGGGGAAATGTTTGACCATAGCCATGATTTTGCAGCCCTTGCTTCAGAGACACTTCTGTAAGTTTTAAAATCAACAAGTTGGGCAGGTAATTTCAATCACCAAGCACACTCACTCACTGTGGTTAGAACCGGATAGACCCTCTCGAGTCTCAGCTCAACTTTAGCATTTTCTTTTGAACTATTTGTCTTACGCAGTTTCACTCATCCCACTCCAGAACTATTTGTCTAACGCAGTTTTTCATTCATCCCTCTCCTGCAACCCATTGATTCTATTGATCCAGTCCTTGTAGAAGAATCTAAATAGTGGTGTGACTCCTAAACTAATCTTCTGTAGTTCTCTTTAGTATAAATAAAAGTCCCGTTTCTGCCCATAAATAGACATCTCTATTGCTAACAATAACAGGTTCTCTACACTTCTGAATTAGAGAGGGAGGAAGCCCGCACATCTTAATCTCTTCCATTGATATTGACACATGAGGAATTAAAGTTTTACATCCACCATACTACAATACATAGAGGCAACGCCTCTTCAACCAAAATGTAAGACAGAGGGGAAAAAAGCTATTAAAAAATTAAAATCTAACATCCACATATTGTGAAA

Coding sequence (CDS)

ATGACCTTTCAGGATTTGTTTGGAGGATGTTGCTGCAATATCGAAATATTATTCGAACTATTGTTATATTTTCTCAATCATTGTGGTGACTTCGATGAATCCAACCGCAAAAGAGTTAAAGACGGCAATTGCTTGGCACTCCGGTTTTGGGTATACATACACTCCAATTTTCATTCAATTAGACGGGTTAATCTACAATTTGGACCTGGACCAGTATTCTCTCAAGTGGACTTGGGCCCATTTACGCTTATGCCTCCAAGACATGAGATTTCACCCTCTGCTTCACTGTCCACTCCTAAACTACATATCAACCTTCAGTTCTTCTGTACCACAAGAATCTTCACGGTTTAG

Protein sequence

MTFQDLFGGCCCNIEILFELLLYFLNHCGDFDESNRKRVKDGNCLALRFWVYIHSNFHSIRRVNLQFGPGPVFSQVDLGPFTLMPPRHEISPSASLSTPKLHINLQFFCTTRIFTV
Homology
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BLAST of CmoCh05G014090 vs. NCBI nr
Match: KAG6599524.1 (hypothetical protein SDJN03_09302, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.4 bits (607), Expect = 3.0e-59
Identity = 112/117 (95.73%), Postives = 113/117 (96.58%), Query Frame = 0 

Query: 1   MTFQDLFGGCCCNIEILFELLLYFLNHCGDFDESNRKRVKDGNCLALRFWVYIHSNFHSI 60
           MTFQDLFGGCCCNIEILFELLLYFLNHCGDFDESN KRVKDGNCLALRFWV+IH NFHSI
Sbjct: 1   MTFQDLFGGCCCNIEILFELLLYFLNHCGDFDESNCKRVKDGNCLALRFWVHIHFNFHSI 60

Query: 61  RRVNLQFGPGPVFSQVDLGPFTLM-PPRHEISPSASLSTPKLHINLQFFCTTRIFTV 117
           R VNLQFGPGPVFSQVDLGPFTLM PPRHEISPSASLSTPKLHINLQFFCTTRIFTV
Sbjct: 61  RWVNLQFGPGPVFSQVDLGPFTLMPPPRHEISPSASLSTPKLHINLQFFCTTRIFTV 117

The following BLAST results are available for this feature:
BLAST of CmoCh05G014090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G014090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G014090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599524.13.0e-5995.73hypothetical protein SDJN03_09302, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh05G014090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G014090.1CmoCh05G014090.1mRNA