CmoCh05G013500 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G013500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 10476017 .. 10477022 (+)
RNA-Seq ExpressionCmoCh05G013500
SyntenyCmoCh05G013500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTGCAAAGCGGACTCAGATGCTAACATTACTGATATCCCACGAACCATTTCCAAGAACTCCTACACATAACTCTTGCATGGTTTTGGATATCATAGTAGTAATTTCAGGCTCTGTGAGGAAGTTTTAACCTGTTTGCCTCTGTACATAGGAAAAATCCAGGAAAATGAAGCAGAAGTGTTGAACCAAAATAAAGAAGAAAAGAGGTAACCTTGAGGATAAGGAGGGGCGGCAAAGCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGACGCTTCGTAAAACCGCACGGATAGAGAGGGGAGCTGATGGATGAGTAGACTCAATTGAAGGCATTAGAAAGAAGAGGAAAAGGCATTAAACATAGACTGACCAACATCTCAAAGAAGTTTCAGAGCGTCGAACCGGAAGAAGCGAATCGAACTCGAGCAGAACAGTTGCTGGCTTTGACATATGGAGAAAGAAAGAACAGTAAGTTTTGATGCTTTTTTCTCTTAGTTTTCTGAGGATTCTTAGAGAAACATGAAAGTGCCATTAATGGCTGCTCTTGATTTGGGTCGTAGCCATTTCAAGAGTACTGTTGAAGCAAGCCCTGTCATGAGTAAAAGCATGAAAAAGCTGAAGCTTCACACAAGGGAAACTGCCTTCAACTCAGGTTAGTTGAACTTATTCATTACATTACTGTTTCTTACATATCTGCCTTGGAATGTTTGGGCCATTTGTAGCCAACAACTACTTTAGGGATCTCCAAATAGAAAACCAATAATTTCATGGTTTGCTCTCATTCCAGCAATGTGTAATTCTCTCCCAATTAATGATTCATGTGCATATTGAATTAAAGAGAATCATTCCTTCTTTAATCTTTGTTCTTAGAGTTAGGTTTTCATAGGGTTTATTAGAAAGCTAGTTTGAAATCTTAAACATGAAGAAAAATATTACGATTAGTACTAATTTACGATGGGTATCTCTGTAAAAGTGAGAGGAACCGTAAAGATAGTTA

mRNA sequence

ATGTACATTGCAAAGCGGACTCAGATGCTAACATTACTGATATCCCACGAACCATTTCCAAGAACTCCTACACATAACTCTTGCATGGTTTTGGATATCATAGTAGTAATTTCAGGCTCTACTGACCAACATCTCAAAGAAGTTTCAGAGCGTCGAACCGGAAGAAGCGAATCGAACTCGAGCAGAACAGTTGCTGGCTTTGACATATGGAGAAAGAAAGAACACCATTTCAAGAGTACTGTTGAAGCAAGCCCTGTCATGAGTAAAAGCATGAAAAAGCTGAAGCTTCACACAAGGGAAACTGCCTTCAACTCAGGTTAGTTGAACTTATTCATTACATTACTGTTTCTTACATATCTGCCTTGGAATGTTTGGGCCATTTGTAGCCAACAACTACTTTAGGGATCTCCAAATAGAAAACCAATAATTTCATGGTTTGCTCTCATTCCAGCAATGTGTAATTCTCTCCCAATTAATGATTCATGTGCATATTGAATTAAAGAGAATCATTCCTTCTTTAATCTTTGTTCTTAGAGTTAGGTTTTCATAGGGTTTATTAGAAAGCTAGTTTGAAATCTTAAACATGAAGAAAAATATTACGATTAGTACTAATTTACGATGGGTATCTCTGTAAAAGTGAGAGGAACCGTAAAGATAGTTA

Coding sequence (CDS)

ATGTACATTGCAAAGCGGACTCAGATGCTAACATTACTGATATCCCACGAACCATTTCCAAGAACTCCTACACATAACTCTTGCATGGTTTTGGATATCATAGTAGTAATTTCAGGCTCTACTGACCAACATCTCAAAGAAGTTTCAGAGCGTCGAACCGGAAGAAGCGAATCGAACTCGAGCAGAACAGTTGCTGGCTTTGACATATGGAGAAAGAAAGAACACCATTTCAAGAGTACTGTTGAAGCAAGCCCTGTCATGAGTAAAAGCATGAAAAAGCTGAAGCTTCACACAAGGGAAACTGCCTTCAACTCAGGTTAG

Protein sequence

MYIAKRTQMLTLLISHEPFPRTPTHNSCMVLDIIVVISGSTDQHLKEVSERRTGRSESNSSRTVAGFDIWRKKEHHFKSTVEASPVMSKSMKKLKLHTRETAFNSG
Homology
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BLAST of CmoCh05G013500 vs. NCBI nr
Match: KAG6599453.1 (hypothetical protein SDJN03_09231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-08
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 9  MLTLLISHEPFPRTPTHNSCMVLDIIVVISGST-DQHLKEVSERRTGRSESNSS 62
          MLTLLISHEPFPRTPTHNSCMVLDII+VISGS  ++  K +  R T  S+   S
Sbjct: 1  MLTLLISHEPFPRTPTHNSCMVLDIIIVISGSALERRGKGIKHRLTNISKKFQS 54

The following BLAST results are available for this feature:
BLAST of CmoCh05G013500 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G013500 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6599453.18.5e-0866.67hypothetical protein SDJN03_09231, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh05G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G013500.1CmoCh05G013500.1mRNA