CmoCh05G013310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G013310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RRM domain-containing protein
Location	Cmo_Chr05: 10316484 .. 10319793 (+)
RNA-Seq Expression	CmoCh05G013310
Synteny	CmoCh05G013310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCGTGTTCTTCCCCACTTTCTTCATTTCCCTGAGATTGGATTTTCGCGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGGGCCGTCGTCGCTGTTAAGGTTAATTCCTCCACCAACCGTGTTCGCTGTTTCCATCTTCTTGTGTGACGATTATTCTTGTACGACTGTAGATAATGGCGTTGTTGCTTCTTGTATACTTCAGAATTATGCAGCTGTTTAGGTCTTTCTGATGGAATATTTAATGTTTGGATATAAGTTTGTGAGTGGTTTTCTTGTCTTTCTTTTTTTTTCTTTTCAAGGCTTCTTCAAGTTCAGAGAGTAATTCAAACCAAAATTTCTGGCTTATGACGTTTTTTTAGGAGTTAAGTAGGTTTCTTGGAGAATAAAGCATGCCTTCTAAAAATGTATGAACTGTTTATACCTGGTCTGAGTTATGACATGGTGGAAAAAACTGGATTTGTGGTGAAGATTCCTTGCTATTGTGAAGATTTTCAGTTGTTAGTTTACTTTTGTTTCAGTAAAATGCTTCCATGATTTGTGTCTGCTATGTATTTGCTAAAATGCTTCAGTTAGGCATGTCGAACTTTTATGTGTTTGAATGGCTTTGTTTCATGTGTTTTCCATTCAAAATGTAATTCTAGTTGGACACTTTGATCTTGTCATCAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGGTATGTTAATTTATAGCTGGAAGCGAATCTTTTAAGTGTTGGTTGTTTATATATTTTTCATTTATGTTTTTTAGTATTGGCTCCTAACATTGTAAGGCTTTGAATTAGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTTGATGTAGAGAGAGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCGAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGTAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGGTGAGTCATCAAACTTATTGAAACCAATGTTAAGTTGTCTTATATAAATTTCTGCTTGTCTTTGATGGAGGAAGTGGAGTAACTTTTTGGCCATGATTATATGATTGCTATTATGGCTTCTGTTTTCAGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAAGTATGCTTAACATTTTTCACCTTTTAGATTTTCTCCTTTAAAAGATTACAACTGACTAGTAAGCATCTAATGAAACTTCTGCACCTATTGTTTGCATTGTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGGTCTGTTTCTATGTATATTGTCCAAGAGGTCTGTTTCTATGGAAATGGTTGGCAAAATTTTCAGAGAAGTTATAATGTGGATTGACATAATTTAACGCTCTCAATCTCAGAATATATATACATATAGGTCCCAAACAAATATAAGACCCATGCTCGCGGAGAAACTAAGCCAATGTATTATATTTAGCTGCAGTTCATACTTCCATTTGAATCTAATTATAGTTTTGTGCAATGTTTTGTACTTGTTTTGGATCATTCTTTTAAATATCTTGATTGCACTTGAATTTAAAGCCTTGGAAGTTTTCCTTTTCAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGGTAAAAGGTTACCTTATAACTTGCAACCATGAGGCATTTGTTGTGTTCTCATTCTTATCCTGTCCTTCGAGCTTTATAACCGATATCCAGTTCATGCCTGACTGACTTGGATGCAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAACGCTCTTCATTCCGTCAGATGCAGCTGACCAAGGTAACTACCTGTTTAATATTTTACGTTGTCTAGAAACTATAACAGAAATGATGATTTTGGTTTTGTTATGCAATTAACTGCAGCTCCATAAAAGCTTTCTTTTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGTTTGTGTTTCAACATTAAAACACCTTCATTCTCTTCTCTTGAAGGCAATAGAAAAAATGTGCTCATGGATGAAATTGTTGGACAGGATTTTATTAGAAAAATTGTACTATGTTTCAATATTTTGTAGGGAATCTCATATGCTATTATATGATATGAATAGATCTATGTATATATATTTTATCTATATAGTTCTCAGAGATTTATCATATATTATATGTATGTAAGCATGCATAAACATTTCCTAAATCTCCCTTTTTGCTATTGCCTTAAGTTTGACCGTCTCTGTATCCGATTACTCGTCTCCAAGGATGCTTGTAATTCATTCTTTTCACATTGCCCATGAATGAATAAAACACCATTACCATTTGCTTACTTTACAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGAATTATGAAGTTCCAGCTAATTGCAGTTCCAGTCATAAGCTGAAAAGGCTGCACTGGTCGGGGTAGTCGTCGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAATTTGTTTGTAACTTAACTTCTCCCAAGATTAAGCTGTCCCTCTCTTTCATGGTACGTTCACAATCAACTATGAACATGTTTTTACTTGCCATTGGCATCTTCAGAGGTTCATTGCTTCACTGTTGTCAAGTTAGGTAGGTAAAGATATATGCTGAAAATTAATTCCAACTTCCAAATAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGCAAATTTGAAGTTTAGGTTGTAATCCTTTTCTAAGAACATTATGACATATTTCAAACAGACTTCCGTATCGTTATATCATTAAATTTCTAC

mRNA sequence

AATCGTGTTCTTCCCCACTTTCTTCATTTCCCTGAGATTGGATTTTCGCGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGGGCCGTCGTCGCTGTTAAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTTGATGTAGAGAGAGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCGAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGTAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAACGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTTTTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGAATTATGAAGTTCCAGCTAATTGCAGTTCCAGTCATAAGCTGAAAAGGCTGCACTGGTCGGGGTAGTCGTCGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAATTTGTTTGTAACTTAACTTCTCCCAAGATTAAGCTGTCCCTCTCTTTCATGGTACGTTCACAATCAACTATGAACATGTTTTTACTTGCCATTGGCATCTTCAGAGGTTCATTGCTTCACTGTTGTCAAGTTAGGTAGGTAAAGATATATGCTGAAAATTAATTCCAACTTCCAAATAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGCAAATTTGAAGTTTAGGTTGTAATCCTTTTCTAAGAACATTATGACATATTTCAAACAGACTTCCGTATCGTTATATCATTAAATTTCTAC

Coding sequence (CDS)

ATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGGGCCGTCGTCGCTGTTAAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTTGATGTAGAGAGAGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCGAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGTAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAACGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTTTTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

Homology

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BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.4e-15
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVNTR-GGGRFG 92
            +DGR + GRVV+VN  N R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-14
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR S R + +GFVTF NP  A DA
Sbjct: 4   DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVNGV-----NTRGGGRFGRESNR 97
           +  M+G++++GR +RV+       + RGG R G    R
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGR 101

[Close]

BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-12
Identity = 62/166 (37.35%), Postives = 83/166 (50.00%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEGRVVRV--------------NGVNTRGGGRFGRESNRFDVERDVNWERDRDR 125
            +DG  I G   RV               G   RGGG  GR+ + +  +R  +  R RDR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGG--GRDRSPYRGDRGRSRSRSRDR 121

Query: 126 GRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHS---QDRD 155
           GRD   DR R R R+    R RDRSRE   ++ER    S   Q+RD
Sbjct: 122 GRDRSRDRSRDRSRD----RSRDRSRERSRERERTRSRSRSPQERD 157

[Close]

BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-12
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVNTRGGGR---------------FGRESNRFDVERDVNWERDR 125
           K M GR +  +V+ VN    + GG                 G E   F   R  +W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR 154
               D + +R+R     R R  D    RDR  + DL++ER  E   DR
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 177

[Close]

BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-09
Identity = 72/220 (32.73%), Postives = 111/220 (50.45%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAID 63
           D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AIKDMDGRTIEGRVVRVNGVNTR----------GGGRFG----------RESNRFDV--- 123
           A K  DG+ I+GR V V+    R          GGG  G          R S R D    
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 -ERDVNWERDRD-RGRDYEHDRYRRRGRNNDWS-RERDRSREHDLDKERVYEHSQDRDLP 183
            ERD + ER+RD R R  E D+ R R R+     R R RSRE + +++R  E S+D+D  
Sbjct: 220 DERDRDRERERDRRERSRERDKERERRRSRSRERRRRSRSREKE-ERKRSRERSRDKDKD 279

Query: 184 KDILLDRNPELEKIPKANEQERDLK-LSHGQDWEKDHDAD 196
           KD   D++ E +K     +++RD K  S  ++ +++ D D
Sbjct: 280 KD--KDKDKEKDK-----DKDRDRKRRSRSRERKRERDRD 311

[Close]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 657.9 bits (1696), Expect = 2.3e-185
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL
Match: A0A6J1KCE4 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC111493652 PE=4 SV=1)

HSP 1 Score: 656.4 bits (1692), Expect = 6.8e-185
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KLSHGQDWEKDHD DWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 3.4e-160
Identity = 305/346 (88.15%), Postives = 320/346 (92.49%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.7e-159
Identity = 303/346 (87.57%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.7e-159
Identity = 303/346 (87.57%), Postives = 319/346 (92.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. NCBI nr
Match: XP_022946346.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Cold-inducible RNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030410.1 Cold-inducible RNA-binding protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 657.9 bits (1696), Expect = 4.8e-185
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 656.4 bits (1692), Expect = 1.4e-184
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           RRRGRNNDWSRERDRSREHDLDKER YEHSQDRDLPKDILLDRNPELEKIPKANEQERDL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. NCBI nr
Match: XP_022999196.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima])

HSP 1 Score: 656.4 bits (1692), Expect = 1.4e-184
Identity = 345/346 (99.71%), Postives = 345/346 (99.71%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KLSHGQDWEKDHD DWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS
Sbjct: 181 KLSHGQDWEKDHDGDWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 575.5 bits (1482), Expect = 3.1e-160
Identity = 306/346 (88.44%), Postives = 322/346 (93.06%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGR+IEGRVVRVNGV +R GGRFGRE NRFDVERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+RDRSREHDLDKER YEHSQD D PKD LLDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QD EK+H ADW GGGGIDN DDY+KSL +DR+QLSRRDNGL  EGRTAR+LSSDS
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLV+ELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 574.3 bits (1479), Expect = 7.0e-160
Identity = 305/346 (88.15%), Postives = 320/346 (92.49%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDVNWERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDS 240
           KL+H QDWEKDH AD +GGGGID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDS
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDS 240

Query: 241 SDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR 300
           SDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Sbjct: 241 SDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKR 300

Query: 301 SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
           SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 SSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CmoCh05G013310 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.2 bits (565), Expect = 6.3e-58
Identity = 159/350 (45.43%), Postives = 215/350 (61.43%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRD--YEHD 120
            DAI+DMDG++I GR VRVN V TR GGR      R  ++    W+R  DR  D  YE D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGR--LQPHGGWDRSPDRRSDGNYERD 120

Query: 121 RYRRRGRNNDWSRERDRSREHD-LDKERVYEHSQDRDLPKD-ILLDRNPELEKIPKANEQ 180
           RY  R R  D  R +DR ++H  ++KER YEHS D +   D  ++DRN   E++   +E 
Sbjct: 121 RYSDRSRERD--RSQDRRKDHRYIEKERAYEHSHDFERRNDHDMVDRNGYKERVFDGDE- 180

Query: 181 ERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTAREL 240
                     DW  D     N G GI+ T  ++      R Q ++R++   ++G   R+ 
Sbjct: 181 ---------GDWRGDRSYVDN-GRGINGTSAHE-----GRSQETKREDSTILDGGRGRDH 240

Query: 241 SSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALIS 300
            S+SS D  H++KE LE   +  E LR E+  +EER   K  +  ELQKK+K+LED LI+
Sbjct: 241 FSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLIN 300

Query: 301 AKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 347
            KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Sbjct: 301 EKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of CmoCh05G013310 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-16
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVNTR-GGGRFG 92
            +DGR + GRVV+VN  N R  GG FG
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of CmoCh05G013310 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-13
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVNTRGGGR---------------FGRESNRFDVERDVNWERDR 125
           K M GR +  +V+ VN    + GG                 G E   F   R  +W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR 154
               D + +R+R     R R  D    RDR  + DL++ER  E   DR
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 177

[Close]

BLAST of CmoCh05G013310 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-13
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVNTRGGGR---------------FGRESNRFDVERDVNWERDR 125
           K M GR +  +V+ VN    + GG                 G E   F   R  +W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR 154
               D + +R+R     R R  D    RDR  + DL++ER  E   DR
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 177

[Close]

BLAST of CmoCh05G013310 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.1e-04
Identity = 69/303 (22.77%), Postives = 122/303 (40.26%), Query Frame = 0


Query: 9   IYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDM 68
           +YVGG+P+D TE  L  +F  YG +V V +I D+ T + K + F+ + + RS I A+ ++
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 69  DGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWER----------DRDRGRDYEH 128
           +G  + GR ++V+       G + +     +  R  N E           +  RG   + 
Sbjct: 98  NGALVLGRTIKVDHC-----GAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCKF 157

Query: 129 DRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQE 188
               +R  N  W  E DRS + D DK R     + R + +          +    +++++
Sbjct: 158 SHDEKRAANTGWGHEEDRSSKWDHDKNR-----EGRGVCRAFQRGECTRGDSCKFSHDEK 217

Query: 189 RDLKLSHGQDWEKDHDADWN---------GGGGIDNTDDYDKSLGSDRDQLSRRDNGLAI 248
           R      G   E+D  + W+         GG    N  D+   +  +      R +G A 
Sbjct: 218 RAATTGWGH--EEDRSSKWDQDKLNGAKKGGTSFGNRGDFKPDV--EEKSYRGRGDGDAS 277

Query: 249 EGRTARELSSDSSD-----DYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVEL 287
            GR       D  D        +++KEQ           R+   +I+    +KG    + 
Sbjct: 278 YGRPKERERVDREDMGPRSRDAYDMKEQKRSGRYDNAYSRRHNDEIDYVREDKGSRAQDW 326

The following BLAST results are available for this feature:

BLAST of CmoCh05G013310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	8.4e-15	49.43	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	9.2e-14	40.82	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q18409	3.9e-12	37.35	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
O22703	5.1e-12	35.71	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q66II8	4.0e-09	32.73	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]

BLAST of CmoCh05G013310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3E0	2.3e-185	100.00	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KCE4	6.8e-185	99.71	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A5D3CHM1	3.4e-160	88.15	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	3.7e-159	87.57	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	3.7e-159	87.57	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CmoCh05G013310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946346.1	4.8e-185	100.00	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata] >KAG6599420.1 Col...	[more]
XP_023547216.1	1.4e-184	99.71	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]
XP_022999196.1	1.4e-184	99.71	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]	[more]
XP_038889756.1	3.1e-160	88.44	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
TYK10694.1	7.0e-160	88.15	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh05G013310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	6.3e-58	45.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	5.9e-16	49.43	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	3.6e-13	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	3.6e-13	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G47120.1	1.1e-04	22.77	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 280..300
None	No IPR available	COILS	Coil	Coil	coord: 318..338
None	No IPR available	COILS	Coil	Coil	coord: 245..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..239
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..344
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..344
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 7.01756E-23 score: 88.5161
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 1.4E-23 score: 94.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 4.4E-21 score: 74.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.36544
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 2.7E-24 score: 87.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G013310.1	CmoCh05G013310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding