CmoCh05G011770 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G011770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTMV resistance protein N-like isoform X1
LocationCmo_Chr05: 9266005 .. 9266377 (+)
RNA-Seq ExpressionCmoCh05G011770
SyntenyCmoCh05G011770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAGTCATCAGACTATATCAAATTCAATAAAAGTTAGCTTTTGACATGATCACAATATAGAAAGAACTTTGGCTACCTATGCTAAATTTTGAGTAGATGGAGATTCATATCGAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGCTACAAACTCCAAAGTTCTTTTATGAGAAAATTCTCATCATCAACATCAGAATATACGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAATGGCGAATGATTGGAATGATGTTATAGTATGGTTTGAAGTTGTGAAAGGTCGTGAGGTTAATGTAACTAATAGAAGCTGTGGTGTCCATCTCACTAAAGAGATCCATGAGATATCCTAA

mRNA sequence

ATGGTTCAGTCATCAGACTATATCAAATTCAATAAAAATGGAGATTCATATCGAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGCTACAAACTCCAAAGTTCTTTTATGAGAAAATTCTCATCATCAACATCAGAATATACGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAATGGCGAATGATTGGAATGATGTTATAGTATGGTTTGAAGTTGTGAAAGGTCGTGAGGTTAATGTAACTAATAGAAGCTGTGGTGTCCATCTCACTAAAGAGATCCATGAGATATCCTAA

Coding sequence (CDS)

ATGGTTCAGTCATCAGACTATATCAAATTCAATAAAAATGGAGATTCATATCGAGGGGAAGCCTTAATTTCATGTAACATATTCATCGGCTACAAACTCCAAAGTTCTTTTATGAGAAAATTCTCATCATCAACATCAGAATATACGTGGTTAGTAACAACTTCTTCTCCAACATTTAGTAGCTCCTTAATGGCGAATGATTGGAATGATGTTATAGTATGGTTTGAAGTTGTGAAAGGTCGTGAGGTTAATGTAACTAATAGAAGCTGTGGTGTCCATCTCACTAAAGAGATCCATGAGATATCCTAA

Protein sequence

MVQSSDYIKFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDWNDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEIS
Homology
[Close]
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match: A0A6J1G4A0 (TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 992  KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1051

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1052 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1084

[Close]
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match: A0A6J1G421 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 1101 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1160

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1161 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1193

[Close]
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match: A0A6J1G440 (TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450603 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 1005 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1064

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1065 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1097

[Close]
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match: A0A6J1G3D0 (TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450402 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-35
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 7    YIKFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMAN 66
            Y     +GDSY+GEALISCNIFIGYKLQSSFMRKFSSS SEYTWLVTTSSPTFSSSL+AN
Sbjct: 1031 YAMIRVDGDSYQGEALISCNIFIGYKLQSSFMRKFSSSISEYTWLVTTSSPTFSSSLVAN 1090

Query: 67   DWNDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEIS 103
            DWNDVIVWFEVVK REV+V+ RSCGVHL  E+H IS
Sbjct: 1091 DWNDVIVWFEVVKCREVHVSIRSCGVHLI-EVHRIS 1125

[Close]
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match: A0A6J1G358 (TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450402 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-35
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 7    YIKFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMAN 66
            Y     +GDSY+GEALISCNIFIGYKLQSSFMRKFSSS SEYTWLVTTSSPTFSSSL+AN
Sbjct: 935  YAMIRVDGDSYQGEALISCNIFIGYKLQSSFMRKFSSSISEYTWLVTTSSPTFSSSLVAN 994

Query: 67   DWNDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEIS 103
            DWNDVIVWFEVVK REV+V+ RSCGVHL  E+H IS
Sbjct: 995  DWNDVIVWFEVVKCREVHVSIRSCGVHLI-EVHRIS 1029

[Close]
BLAST of CmoCh05G011770 vs. NCBI nr
Match: KAG6598998.1 (Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 1101 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1160

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1161 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1193

[Close]
BLAST of CmoCh05G011770 vs. NCBI nr
Match: XP_022946582.1 (TMV resistance protein N-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 1005 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1064

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1065 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1097

[Close]
BLAST of CmoCh05G011770 vs. NCBI nr
Match: XP_022946581.1 (TMV resistance protein N-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 1101 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1160

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1161 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1193

[Close]
BLAST of CmoCh05G011770 vs. NCBI nr
Match: XP_022946583.1 (TMV resistance protein N-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 79/93 (84.95%), Postives = 84/93 (90.32%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL+ANDW
Sbjct: 992  KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLVANDW 1051

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1052 NDVIVWFEVVKRREVNVTIRSCGVHLTDEVDGI 1084

[Close]
BLAST of CmoCh05G011770 vs. NCBI nr
Match: XP_023537666.1 (disease resistance protein RPS6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023537667.1 disease resistance protein RPS6-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023537668.1 disease resistance protein RPS6-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.2 bits (404), Expect = 9.3e-36
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 0 

Query: 9    KFNKNGDSYRGEALISCNIFIGYKLQSSFMRKFSSSTSEYTWLVTTSSPTFSSSLMANDW 68
            KF  +GDSY GEALISCNIFIGY+LQSSFMRKF+ STSEYTWLVTTSSPTFSSSL  NDW
Sbjct: 1094 KFRVDGDSYEGEALISCNIFIGYRLQSSFMRKFAPSTSEYTWLVTTSSPTFSSSLATNDW 1153

Query: 69   NDVIVWFEVVKGREVNVTNRSCGVHLTKEIHEI 102
            NDVIVWFEVVK REVNVT RSCGVHLT E+  I
Sbjct: 1154 NDVIVWFEVVKSREVNVTIRSCGVHLTDEVDGI 1186

The following BLAST results are available for this feature:
BLAST of CmoCh05G011770 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G011770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G4A01.5e-3684.95TMV resistance protein N-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1G4211.5e-3684.95TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1G4401.5e-3684.95TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1G3D03.8e-3582.29TMV resistance protein N-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1G3583.8e-3582.29TMV resistance protein N-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of CmoCh05G011770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598998.13.2e-3684.95Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022946582.13.2e-3684.95TMV resistance protein N-like isoform X2 [Cucurbita moschata][more]
XP_022946581.13.2e-3684.95TMV resistance protein N-like isoform X1 [Cucurbita moschata][more]
XP_022946583.13.2e-3684.95TMV resistance protein N-like isoform X3 [Cucurbita moschata][more]
XP_023537666.19.3e-3683.87disease resistance protein RPS6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of CmoCh05G011770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G011770.1CmoCh05G011770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0007165 signal transduction
molecular_function GO:0043531 ADP binding
molecular_function GO:0003953 NAD+ nucleosidase activity