CmoCh05G011300 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G011300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFormamidopyrimidine-DNA glycosylase
LocationCmo_Chr05: 9019139 .. 9020488 (+)
RNA-Seq ExpressionCmoCh05G011300
SyntenyCmoCh05G011300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGGTTTTGTAATTTCGTTGCTGCCTTCATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGTAAATTCCGCTTCTAAACGCCTTCCCTCGTTAATCACGTCTGTAGCTGCGGAATTTTCTTCAATATGTACTCTGATTCTTCTAATGTTCAACGTAACGGAGAGCTTCATTCGAGGTAGCCTGTTTAGGTTGCTGCAATTGACCTTGCTGTTATATTCTAGCATTTGTAAGACGAATGCGTTTTTTCTGTTTCGCATTATGCTTTCAGGTGGACCGGCCATAAGAAACTGAGTTCTGAGAATTGTTTTTGGTTGGACATTTTTGTTTGGATGTCTGGAAAGTGTTTGGTGATTATCCGTGTTAAAATGGATTGATAGGGTGAATAGTTCTTTCTTCTGGAAAGATTATCGTTAGAAAATTAAGTTCTGTGAGATTATATAAGGATTAGCGAGCATGTTCTAATTTCGTTGTAATGATCGATTAATGAGCAAATTTGGCGCGCTTCATACATAGTTCCATTTCCAACTGCAATTTTTGTAAGTAGCATCTTCGAAACATCAGTCCAGTTGTGAAAATTATTGTCTGAAGCTCAGTCGTTAATACTAAAATGCTTGGAAAATGATTGAAGAAATAAGAATGGCTGTTTATTTCTCTAGATTTCAAGATTTTGATCGCACACTGACGTGTTTTTCCTACTTATCTTTGAACGATGCGTCAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGGTTTGATTCTCATTTTTTCTATGATCAATAATTAGTGGAAATCACAACCATTTTGAGTCATTTTAACTTAAAATTTCTTTAGTTATATCTTTTGTTCATCTTGCTCCACTGTAAAATTGATCAAAACTAGAAAAGGTAATGATTGAGAATTGTACTACTAATGTAATATAGTCTTGTACCCATTTATTATATCATTACTAGATTGAGAAAATTTTGGATTGCTGATAATATGCATTGCATTTGCAGCTTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAAGACCTTTTTGGGGAATAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGATCGGATTACTTAACTATTCAAACTTTGAATTCCACTTCTTGATTTTCTTTTGTTTACTATGTCTGATCTTAGTCGAATGCATCAGTCACTTGCTTTCTCCAAAATATCTGAAACTGC

mRNA sequence

TGGGGGTTTTGTAATTTCGTTGCTGCCTTCATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGCTTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAAGACCTTTTTGGGGAATAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGATCGGATTACTTAACTATTCAAACTTTGAATTCCACTTCTTGATTTTCTTTTGTTTACTATGTCTGATCTTAGTCGAATGCATCAGTCACTTGCTTTCTCCAAAATATCTGAAACTGC

Coding sequence (CDS)

ATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGCTTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAAGACCTTTTTGGGGAATAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGATCGGATTACTTAA

Protein sequence

MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
Homology
[Close]
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.3e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR 60
           MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR 60

Query: 61  LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 61  LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASK VLSCC+NKSIS NWENC PV
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEA VDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 5.2e-40
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTASK VL C + KSIS NWEN   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 85/105 (80.95%), Postives = 90/105 (85.71%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTA K VL C + KSIS NWEN   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match: A0A0A0LJQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.1e-37
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQ+  KE+PP KLAK T+V RRAGTASK VL   + KSIS NWEN   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]
BLAST of CmoCh05G011300 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 219.5 bits (558), Expect = 1.3e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR 60
           MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVR 60

Query: 61  LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 61  LTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]
BLAST of CmoCh05G011300 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 4.6e-51
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTAS FVLSCC+NKSIS NWENCHPV
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASTFVLSCCSNKSISMNWENCHPV 60

Query: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104

[Close]
BLAST of CmoCh05G011300 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASK VLSCC+NKSIS NWENC PV
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEA VDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]
BLAST of CmoCh05G011300 vs. NCBI nr
Match: KAG7030230.1 (hypothetical protein SDJN02_08577, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 17  KEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRN 76
           +EMPPWKLAKVTVVPRRAGTASK VLSCC+NKSISNWENCHPVRLTSRPFWG+VSSSSRN
Sbjct: 3   QEMPPWKLAKVTVVPRRAGTASKLVLSCCSNKSISNWENCHPVRLTSRPFWGLVSSSSRN 62

Query: 77  LVLAGYWVGPDVDDGWGYIEAFVDRIT 104
           LVLAGYWVGPDVDDGWGYIEAFVDRIT
Sbjct: 63  LVLAGYWVGPDVDDGWGYIEAFVDRIT 89

[Close]
BLAST of CmoCh05G011300 vs. NCBI nr
Match: KAA0048017.1 (hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-39
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 0 

Query: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60
           MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTASK VL C + KSIS NWEN   V
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 104
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

The following BLAST results are available for this feature:
BLAST of CmoCh05G011300 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G011300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3X36.3e-54100.00uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1K9Q02.7e-4995.19uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548... [more]
A0A5A7U1B85.2e-4081.90Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CPK72.6e-3980.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJQ79.1e-3779.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1[more]
BLAST of CmoCh05G011300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946526.11.3e-53100.00uncharacterized protein LOC111450562 [Cucurbita moschata][more]
XP_023545344.14.6e-5197.12uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022999037.15.6e-4995.19uncharacterized protein LOC111493548 [Cucurbita maxima][more]
KAG7030230.12.1e-4395.40hypothetical protein SDJN02_08577, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA0048017.11.1e-3981.90hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa][more]
BLAST of CmoCh05G011300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G011300.1CmoCh05G011300.1mRNA