CmoCh05G010410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G010410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Translation initiation factor IF-3
Location	Cmo_Chr05: 8429131 .. 8434276 (+)
RNA-Seq Expression	CmoCh05G010410
Synteny	CmoCh05G010410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAATTCACACCCTCCACTGCTCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTTTGTGCCTTATACATGCAAGAGTTACATGACGAATGAATTTTGTTTTTGATTCCGAGTTCTTGTTTGTTTTATTGCGTTTTTTTGTGAGTGATTTGTATAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTAGGTGTTTTGTTCCGCCTGAATAGCTTTTGCTTGGGGAAAGGCAATTTTTGTCTATCTTCCTGTTTCCATTTACAACATTTCGAAACTTGTATGCGAGGCGCCTTAGTTTGGAAATTTAATCTTCTTGAAATGAATAGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTACGTCGTCTTGTACCGTGTGTTGTTAAAATAATTGTTTGTCTATGAATTCCAAAGAAACCTTGATCCAAACTTTAATGCTATGCGGGGACAAAATGTTGAAATATCATCATTAGCCTGATACGGTCAAGATACCTAAATATTTTAGGAAAAAGATTTAGATATTTTAGGAATAGATTGTATAGCTTTTAGTATAAATACCCTTCCGCTCTATTCCCAAGAAATACAAATCACAGAGTGCAGCAATAGTTTCTACCGAGTGTCTTGTAATCTCTTCTCGATTGGTGTTAATAAATTGATGTTAATAAAGTGTGCGAGTGTTTCCTACAAAAAGCTATGTTCAACACAAAATACATAGCTCATATTTCTTTTGAAACTATGAAATCGAGAATGTGCTTTTTAGCTTCAGGTTGATGTTGATCTTAAATCTTAATTCCTTTTTCACTCTCTGCTTGTTTATTGCCACTTGGGCTTTGGTTTATCTTCAATAAACTGGTCTCGATATAAAACTGAGCATGGGATCAAAAGCTTATGGTAATTATAACTGAAAATTGTAGTTCTAAGTTATAGCAGTTCATCCATAACTAGAAGAATCATCGCATGGTGAATGTTTTTCATTTCAGAGTTGTGTATTAGGCCAACTTTACTGTTTGCTCCGATTTAAAATTGTAATTTCTTTCCATATGGGCGTAAACCGGCAACGAAACTTCTATCTGTCAACACAAGACTTGAAACTTTCTCAGCAATCAGCATTTTAGTTGTCTGCATACTCAAGTTTGGCTGATGCAATTTACGAACCCGTCTCACAGTCTGTGTATTGTTTACTACATGGATAAAGATGGTCATGGACTATTATTTTCTCGGAAACCATGTATGCAACAACCTAAGCCCACTGCTAGCAGATATTGTCCGCTTTGGCTCATTACATATGCCGCCGGCCTCACGGTTTTAAAACACGTCTACTTGGGAGATGTTTATACACTTTTATAAGGAATGTTTCGTTCTCCTCTCCAACTGATGTGTGATCTCACATTGGTTGGAGAGGGGAGCGAAACATTCCTTATAAGAGTGTGAAACCTCTCCCTAGAGGATGCGTATTAAAACCTTGAGGGGAAGTCCAAAGAGAATAATATCTGCTAGAGGTAGGCTTGAGCTGTTACAATGTAATTTTGTTGCTTTGTGTTGGATATAGCTAATTCTTTCTATTCCATTCAGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGGTATGCCACTTTCTCACTCTGTTCTTCCCATTACCTCTCTGCTTGTGGAAAAAGTTGTATTTGCTCAAGTCCAATGCCAATCTGATGAACTTTAATGATTACACTAGTTCTTTAGTAAACCCGTTGAGATGATTTATTTTCAATTAATACTTCACTTTCAATTAAATGTTCTTGAGAAAGTAATATATGAAAATACTAAAGAGATGGAAACATGGTACAATGTGATGGAGAAATAATGAAAAATATGATGATTGTTATGTTTTCACTGGGAGAATTAAAGGGTCACATTCGTTTTTCCTTGTTGAATTTTGTTCCTTTTATGTTGAGATTTTTCTTTTCCTGTCTTTCTCAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGGTGAATCTCTTTCTTAATTGAGTCTGCACAATTTATTTGGTTCACAAACCTTTCAGATTTGGGGAAAGATACTAATAATGTGTGGTTTTGAATGTTAGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGGTAACACATTCCTCAATTGCTTTGTTTTTTTGGAGGTTTTCCTTTCTTTTCTTCTTCTTCTCAACCTAAAGTCACTTGAACTTATGACTTCTAAGATCAATAATCAACCTGTAAAGCCAAGAGTCATGAGAGGCTTTTGTTCCTTGCGTTTCGCTGCCATTTCAGAAATAATTCTGCACACGTTCCTTTTCTCAATCTCAACCTTCTGGTTGCTATTATTATTGCACAGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTTCTTCAGGAATCTTTTCTATATCTTTTATCTTCTCTTCATGCATCCAAATATATTGTTATATTTGTTTGCATCACTTTGGAAATCTTGTAACGAATATTGTAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGGTACTCATGTTCTATCAGTTTTGTGCCACCTTTAATATCTGTTCATCATGGCAATACTAGAGAAAAATGATGCTCCTTATTGTTTTAAGTGAAAATTGAAAGTGTAGTTTTAGACACTTGGTTGAACTATTTTATCTCTGATGTCTGACCCCATGAAAAACGATTAGTACCTTCAGGGAGAACAGTTTCTAAACCTGTTTAATTTAACCATTTTCTTAAGGTTTGTGGCATGTGAGTTTCCAGGCCTGTAACAGACCGGTCTGTCTAACCTACAATATTTGAACTCATTCATGAGATCTTATTATCTAAAATCTCATAGATGGGTGGCTAAAATGGGGTTTGGACCAAGCACTTTCTTTTTTGTTAGGAATTACGGACCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTACTTTTGGGCTTCTCCAAAAGGCCTCGTACCAATGGAGATTTGTTCCTTATAAACCCATGATACAACTCCTTAATTAACTGATGTGGGACTCCCAACCATCCTTGACATTTCTAAATCTTAACAAGAGCCTAAGTAATCTATAAGAAGGGGCTCTAGTCAAGCAAGTAAGGCCTAAGGAACAATTAAGAAATATATACCGATGGAAATTCGAAGAGAGGCATGATATTTATCGAGGAATCAACCTCCCCTGCTAGTACTTTAACCCCTCTGAAAATCCTGATATTTCTTTTCTCCCCAAAGACGACTTTTTTTGACGATTTGAAGGGGTTGCTTGGTGTCACAATCGCACTTTTCTTGGCAGCGGACTTTGCGATTGTGTGGCGCTCACTTCCCAACACCAAGTGAGTCAAGCCAGTTTGTATTCGCGACACCTTCAGCCGGGCAACACATGCTCAAGCCTCTAGTCTTGATTTGAGAAGAAGGTTTTAGAAGACGGGGACAGAGAGATTTTGAAAGTAAGATTGAGAGAGATTGAAAGCAATGTTATATGACATACAAGCAAAAGGCAACCCAACAACTTAAATAACATATAACTTCTTGGGTAGGGAGAATTCGACAACTAGTCGCATCCTCCTATAGTACATTTTGAGGCGATTCAGGTGGCCTAGACGTGATTTCGCCGAACGGTCATACAAAATCAGGGGGAGAAGTTGACAACTAGTTATATCCCCTATAGTACATTGTGGGGCGATTCAGGTCTGGCAGACCTAAACATGATTTCGCCGAGTAGTCGTACAAACAGAAAATACTAACAATATAACATGGAACTAAATAAAGGGTTTGGCATGACATGGGCAATGCGGCCACGGGCAACACACCCTGGACGAGCATGACCGTGACACTTGGTACCCATTCAGAACATTTTGATCACATGGCTCATTTTTTTACATTTTTCTAGTGTTTTTCTTTCGTTCGAGTCTTCTTCTCCCTTATTTATTTACTCAAATGTAAATATGATACCTTCTGTTATTATCTCTCTTCTCCATTGACCTGCTCAATACTTTATTATTCACAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAGAAGGGTTAGTCACAACAATCTCAATCTACTTATAGCATATAGAGATATTTGAGAGCTTAATGTATAATGTCCTGTTTAATCTTATGCACCAGATTGTTGTTCATCCTATTTTTTTAGAGGAATGTTTAGAAATCAGATGTGCTACTCATTCTTTTGAAAAGCATCCATATCTCTGAGCTTACTTTTTAGTTTGCTCCAAACTTAGCTTTTAGTGCCTAAGAGGATAGTGAGAGTGATTATTAGCTATCATAGGTTGGCCGGGACACCTTTCCGTGTTTAGAGAGTTGACCGCTCCAATTCTGAGGAAAAATCAGGGGTAGGGTCAACGATCACTCCTGTCACGGGCTGGCAAGAACTCAAGACAATTCCTGTGAAACTCTTTCCTCTGTGTTTCTTGGGAATTTCTTCTCTTCGATGAAAAACTCTTTGGAGAGAATTTCCCTTCCTCG

mRNA sequence

GCCAAATTCACACCCTCCACTGCTCCCTTCCTCAGCTCAAACCTCTATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAGAAGGGTTAGTCACAACAATCTCAATCTACTTATAGCATATAGAGATATTTGAGAGCTTAATGTATAATGTCCTGTTTAATCTTATGCACCAGATTGTTGTTCATCCTATTTTTTTAGAGGAATGTTTAGAAATCAGATGTGCTACTCATTCTTTTGAAAAGCATCCATATCTCTGAGCTTACTTTTTAGTTTGCTCCAAACTTAGCTTTTAGTGCCTAAGAGGATAGTGAGAGTGATTATTAGCTATCATAGGTTGGCCGGGACACCTTTCCGTGTTTAGAGAGTTGACCGCTCCAATTCTGAGGAAAAATCAGGGGTAGGGTCAACGATCACTCCTGTCACGGGCTGGCAAGAACTCAAGACAATTCCTGTGAAACTCTTTCCTCTGTGTTTCTTGGGAATTTCTTCTCTTCGATGAAAAACTCTTTGGAGAGAATTTCCCTTCCTCG

Coding sequence (CDS)

ATGGCTGGGCTCTCCGGCCGCTTCCCTTTCAAATCTATCTCATCTCAATCCTCCGCCACCGCCACAGCCACCACCACCACCTCCTCCTCCTCCTCCGCCACTCCCTTTCGAACCTCAATTTTCCCTCTACCCCTCCCCTCCTCCAAATCCAATGCCTTCAGATTCCGCCTTCACAACTCCAACTCTCTGCGTCTCGTTTCCTCTCCAATTCGTACTTCTGTATTTGCTCGATACGGCGGCGCTCCTCGATCTTCAGGACCGGCGGGTTCTAAGCGCTCTGAAGATTCTCTTGCTCTCGATGTTTCCTCCATCAGGTCGAATAATGTGAGGCTTATCGATGAACAGCAGAATATGGTTGGAATTGTGCCAAAGTCCCAGGCGATTCAAATGGCTGAGGATGCCGAACTCGATTTGGTTGTATTATCCCCTGATGCAGATCCTCCGGTTGTCAGAATAATGGATTACAGTAAGTATAGGTACGATCTACAAAAGAAGAAACGAGAACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTGAAGGAGCTTAAAATGGGTTATAAAATTGACCAACATGATTACTCTGTTCGTTTGAGAGCTGCAAAGAAGTTTTTGCAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAGGGTCGTGAAAACGAGTTCAGAAAAATAGCGATTGAGCTTGTCAAACGTTTCCAGGAAGAGCTCGGGGAGCTTGCAACTGAAGAGGCCAAAAACTTCAGAGACAGGAATGTATTTATTGTTCTAGCTCCTAACAAGGCTGTTCTTCAAAAGTCTCAAGAACCCCCGAAGAAAAAAGATAAACCTGCTGCAGTTAATGAAGTTTCTGCCCGTGTCGAAGTTTCGGAAGCGTCGAGCTTAAGCCAAAAATAG

Protein sequence

MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK

Homology

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BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot
Match: Q94B52 (Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-4 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.3e-75
Identity = 154/225 (68.44%), Postives = 183/225 (81.33%), Query Frame = 0


Query: 73  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 132
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 133 PKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKE 192
            K +A++ AEDAELDLV+LSPDADPPVVR+MDYSKYRY+ QK+K+EQQKK+  TRMDLKE
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKE 173

Query: 193 LKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGEL 252
           LKMGY IDQHDYSVR+RAA+KFLQDGDKVKVIVN+KGRENEFR IAIEL++RFQ E+GEL
Sbjct: 174 LKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGEL 233

Query: 253 ATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
            TEE+KNFRDRN+FIVL PNK V++K QEPP KK K  A ++VSA
Sbjct: 234 GTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSA 272

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BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot
Match: O82234 (Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IF3-2 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.9e-72
Identity = 166/277 (59.93%), Postives = 200/277 (72.20%), Query Frame = 0


Query: 18  SATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNSNSLRLVSSPIR----TS 77
           +A  T  T T SS        S+F +    SK  + R      +   L  SP R    T 
Sbjct: 12  NAVFTGITKTVSSH-------SLFSV---DSKLCSLRLSKTELSFTNLTPSPRRAFAVTC 71

Query: 78  VFARYGGAPRSSGP---AGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQM 137
            F   GG  R SG       K +E   ALD+SSIRS  VRLID QQNM+G+V K +A++M
Sbjct: 72  RFGGGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRM 131

Query: 138 AEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKID 197
           A+DAELDLV+LSPDADPPVV++MDYSKYRY+ QK+K++QQKK+  TRMDLKELKMGY ID
Sbjct: 132 ADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNID 191

Query: 198 QHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGELATEEAKNF 257
           QHDYSVRLRAA+KFLQDGDKVKVIV++KGRENEFR IAIEL++RFQ E+GELATEE+KNF
Sbjct: 192 QHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNF 251

Query: 258 RDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
           RDRN+FI+L PNK +++K QEPP +K K  A NE SA
Sbjct: 252 RDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASA 276

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BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot
Match: B2IY66 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=infC PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-31
Identity = 78/176 (44.32%), Postives = 119/176 (67.61%), Query Frame = 0


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID     +GI+P  +A+Q+AE+ ELDLV++S  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLISDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEEL---GELATEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L   GEL  ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEL--QQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot
Match: Q8YNE3 (Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=infC PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-30
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID   + +GI+   +A+Q+AE+ ELDLV+LS  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L      ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot
Match: Q3MBH6 (Translation initiation factor IF-3 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=infC PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-30
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 91  KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVV 150
           KR+ D   ++   IR   +R+ID   + +GI+   +A+Q+AE+ ELDLV+LS  ADPPV 
Sbjct: 7   KRTRDLPQIN-ERIRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVC 66

Query: 151 RIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDK 210
           RIMDY KY+++ +KK RE +KK      D+KE+KM YKI++HDY+VR++ A++FL+DGDK
Sbjct: 67  RIMDYGKYKFEQEKKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDK 126

Query: 211 VKVIVNLKGRENEFRKIAIELVKRFQEELGELA-TEEAKNFRDRNVFIVLAPNK 264
           VK  V  +GRE +   +A +L+KR   +L      ++A     RN+ ++++P K
Sbjct: 127 VKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177

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BLAST of CmoCh05G010410 vs. ExPASy TrEMBL
Match: A0A6J1G3Y5 (Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111450575 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 8.5e-152
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120
           NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG
Sbjct: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120

Query: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180
           IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL
Sbjct: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180

Query: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240
           KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG
Sbjct: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240

Query: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300
           ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK
Sbjct: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300

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BLAST of CmoCh05G010410 vs. ExPASy TrEMBL
Match: A0A6J1KDY9 (Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111493999 PE=3 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.5e-145
Identity = 291/300 (97.00%), Postives = 292/300 (97.33%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAGLSGRFPFKSISSQSSATATA  TTSSSSSATPFRTSIFPLP PSSKSNA RFRLH+S
Sbjct: 1   MAGLSGRFPFKSISSQSSATATA--TTSSSSSATPFRTSIFPLPFPSSKSNAVRFRLHSS 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120
           NSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG
Sbjct: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120

Query: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180
           IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL
Sbjct: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180

Query: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240
           KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG
Sbjct: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240

Query: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300
           ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA VE  EASSLSQK
Sbjct: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSAGVEAPEASSLSQK 298

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BLAST of CmoCh05G010410 vs. ExPASy TrEMBL
Match: A0A6J1DYM5 (Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC111024717 PE=3 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.6e-118
Identity = 240/292 (82.19%), Postives = 264/292 (90.41%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSAT--PFRTSIFPLPLPSSKSNAFRFRLH 60
           MAGL+ RFPFK + SQSSAT ++   +SSSS+A   PFRTSI PLPL SS+SNAF FRLH
Sbjct: 1   MAGLTSRFPFKPLLSQSSATTSSAAASSSSSAAAAPPFRTSISPLPLSSSESNAFGFRLH 60

Query: 61  NSNSLRL-VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQN 120
           NSNSLRL VSSPIR SVFAR+GGAPRSSGPA SKRS+D   LDVS+IRSNNVRLID QQN
Sbjct: 61  NSNSLRLIVSSPIRRSVFARFGGAPRSSGPADSKRSDDDFGLDVSAIRSNNVRLIDAQQN 120

Query: 121 MVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATR 180
           MVGIV K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQKKSAATR
Sbjct: 121 MVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSAATR 180

Query: 181 MDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQE 240
           MDLKELKMGY IDQHDYSVRL+AA++FL+DGDKVKVIVNLKGRENEFR IAIEL++RFQ+
Sbjct: 181 MDLKELKMGYNIDQHDYSVRLKAARRFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQD 240

Query: 241 ELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           E+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKD P A+NEVSA V
Sbjct: 241 EIGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDNP-AINEVSAGV 291

[Close]

BLAST of CmoCh05G010410 vs. ExPASy TrEMBL
Match: A0A0A0LH34 (Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 9.9e-116
Identity = 239/300 (79.67%), Postives = 262/300 (87.33%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTS------SSSSATPFRTSIFPLPLPSSKSNAFR 60
           MAGLSG FPFKS+ SQSSA AT T+++S      SSSS TPFRTS   LP+ SS SNAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRLHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNV 120
           FRLH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D + LD+S+I+S NV
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQ 180
           RLID +QNMVG+V K+QAIQMAEDAELDLVV+SPDADPPVVRIMDY+KYRY+LQKKKR Q
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAI 240
           QKKSAATRMDLKELKMGY IDQHDYSVRL+AAKKFL+DGDKVKVIVNLKGRENEFR IAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           EL++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKDKP AVN VSA V
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKP-AVNGVSASV 299

[Close]

BLAST of CmoCh05G010410 vs. ExPASy TrEMBL
Match: A0A1S3BV82 (Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.7e-115
Identity = 242/298 (81.21%), Postives = 260/298 (87.25%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATT---TTSSSSSATPFRTSIFPLPLPSS-KSNAFRFR 60
           MAGLSG FPFKS+ SQSSA +T T+     +SSSS TPFRTS   LP+ SS  SNAF+ R
Sbjct: 1   MAGLSGSFPFKSLLSQSSAASTTTSPAAAPTSSSSTTPFRTSTPSLPISSSFNSNAFKLR 60

Query: 61  LHNSNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRL 120
           LH SNSLRL     VSSPIRTSVFAR GGAPRSSGP  SKRS D   LDVS+IRSNNVRL
Sbjct: 61  LHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRL 120

Query: 121 IDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQK 180
           ID QQNMVG+V K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQK
Sbjct: 121 IDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQK 180

Query: 181 KSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIEL 240
           KSAATRMDLKELKMGY IDQHDYSVRL+AAKKFL+DGDKVKVIVNLKGRENEFR IAIEL
Sbjct: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIEL 240

Query: 241 VKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARV 290
           ++RFQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QEPPKKKDKP AVNEVSA V
Sbjct: 241 IRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKP-AVNEVSAGV 297

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: XP_022946541.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 546.2 bits (1406), Expect = 1.8e-151
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120
           NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG
Sbjct: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120

Query: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180
           IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL
Sbjct: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180

Query: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240
           KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG
Sbjct: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240

Query: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300
           ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK
Sbjct: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: KAG6599141.1 (Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 538.1 bits (1385), Expect = 4.8e-149
Identity = 299/305 (98.03%), Postives = 299/305 (98.03%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTT-----SSSSSATPFRTSIFPLPLPSSKSNAFRF 60
           MAGLSGRFPFKSISSQSSATATATTTT     SSSSSATPFRTSIFPLPLPSSKSNAFRF
Sbjct: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSSSSSSATPFRTSIFPLPLPSSKSNAFRF 60

Query: 61  RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQ 120
           RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSK SEDSLALDVSSIRSNNVRLIDEQ
Sbjct: 61  RLHNSNSLRLVSSPIRTSVFARYGGAPRSSGPAGSKHSEDSLALDVSSIRSNNVRLIDEQ 120

Query: 121 QNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAA 180
           QNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAA
Sbjct: 121 QNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAA 180

Query: 181 TRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRF 240
           TRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRF
Sbjct: 181 TRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRF 240

Query: 241 QEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEAS 300
           QEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEAS
Sbjct: 241 QEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEAS 300

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: XP_023547209.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 528.9 bits (1361), Expect = 2.9e-146
Identity = 293/300 (97.67%), Postives = 293/300 (97.67%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAGLSGRFPFKSISSQSSATATA  TTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS
Sbjct: 1   MAGLSGRFPFKSISSQSSATATA--TTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120
           NSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG
Sbjct: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120

Query: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180
           IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL
Sbjct: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180

Query: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240
           KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG
Sbjct: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240

Query: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300
           ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA VE  EA SLSQK
Sbjct: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSAAVEAPEAPSLSQK 298

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: XP_022999741.1 (translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 524.2 bits (1349), Expect = 7.2e-145
Identity = 291/300 (97.00%), Postives = 292/300 (97.33%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQSSATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNS 60
           MAGLSGRFPFKSISSQSSATATA  TTSSSSSATPFRTSIFPLP PSSKSNA RFRLH+S
Sbjct: 1   MAGLSGRFPFKSISSQSSATATA--TTSSSSSATPFRTSIFPLPFPSSKSNAVRFRLHSS 60

Query: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120
           NSLRLVSSPIRTSVFARYGGAPRSSGP GSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG
Sbjct: 61  NSLRLVSSPIRTSVFARYGGAPRSSGPTGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVG 120

Query: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180
           IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL
Sbjct: 121 IVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDL 180

Query: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240
           KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG
Sbjct: 181 KELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELG 240

Query: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSARVEVSEASSLSQK 300
           ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA VE  EASSLSQK
Sbjct: 241 ELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSAGVEAPEASSLSQK 298

[Close]

BLAST of CmoCh05G010410 vs. NCBI nr
Match: XP_038891171.1 (translation initiation factor IF3-4, chloroplastic [Benincasa hispida])

HSP 1 Score: 438.3 bits (1126), Expect = 5.2e-119
Identity = 247/296 (83.45%), Postives = 266/296 (89.86%), Query Frame = 0


Query: 1   MAGLSGRFPFKSISSQS-SATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHN 60
           MAGLSGRFPFK + SQS +AT T+    +SSSSATPFRTSI PLPL SSK+NAF+FRL  
Sbjct: 1   MAGLSGRFPFKPLLSQSTTATTTSAAAATSSSSATPFRTSIRPLPLSSSKANAFKFRLRK 60

Query: 61  SNSLRL-----VSSPIRTSVFARYGGAPRSSGPAGSKRSEDSLALDVSSIRSNNVRLIDE 120
           SNSLRL     VSSPIRTSVF+RYGGAPRSSGPA SKRS+D   LDVS+IRSNNVRLID 
Sbjct: 61  SNSLRLVVSFPVSSPIRTSVFSRYGGAPRSSGPADSKRSDDEFGLDVSAIRSNNVRLIDA 120

Query: 121 QQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSA 180
           QQNMVGIV K+QAIQMAEDAELDLVVLSPDADPPVVRIMDY+KYRY+LQKKKR QQKKSA
Sbjct: 121 QQNMVGIVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQKKSA 180

Query: 181 ATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKR 240
           ATRMDLKELKMGY IDQHDYSVRLRAA+KFL+DGDKVKVIVNLKGRENEFR IAIEL++R
Sbjct: 181 ATRMDLKELKMGYNIDQHDYSVRLRAAQKFLKDGDKVKVIVNLKGRENEFRNIAIELIRR 240

Query: 241 FQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQE-PPKKKDKPAAVNEVSARV 290
           FQEE+GELATEEAKNFRDRN+FIVL PNKAVLQK+QE PPKKKDKP AVNEVSA V
Sbjct: 241 FQEEIGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEQPPKKKDKP-AVNEVSAGV 295

[Close]

BLAST of CmoCh05G010410 vs. TAIR 10
Match: AT4G30690.1 (Translation initiation factor 3 protein )

HSP 1 Score: 284.6 bits (727), Expect = 8.9e-77
Identity = 154/225 (68.44%), Postives = 183/225 (81.33%), Query Frame = 0


Query: 73  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 132
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 133 PKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKE 192
            K +A++ AEDAELDLV+LSPDADPPVVR+MDYSKYRY+ QK+K+EQQKK+  TRMDLKE
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKE 173

Query: 193 LKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGEL 252
           LKMGY IDQHDYSVR+RAA+KFLQDGDKVKVIVN+KGRENEFR IAIEL++RFQ E+GEL
Sbjct: 174 LKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGEL 233

Query: 253 ATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
            TEE+KNFRDRN+FIVL PNK V++K QEPP KK K  A ++VSA
Sbjct: 234 GTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSA 272

[Close]

BLAST of CmoCh05G010410 vs. TAIR 10
Match: AT2G24060.1 (Translation initiation factor 3 protein )

HSP 1 Score: 273.5 bits (698), Expect = 2.1e-73
Identity = 166/277 (59.93%), Postives = 200/277 (72.20%), Query Frame = 0


Query: 18  SATATATTTTSSSSSATPFRTSIFPLPLPSSKSNAFRFRLHNSNSLRLVSSPIR----TS 77
           +A  T  T T SS        S+F +    SK  + R      +   L  SP R    T 
Sbjct: 12  NAVFTGITKTVSSH-------SLFSV---DSKLCSLRLSKTELSFTNLTPSPRRAFAVTC 71

Query: 78  VFARYGGAPRSSGP---AGSKRSEDSLALDVSSIRSNNVRLIDEQQNMVGIVPKSQAIQM 137
            F   GG  R SG       K +E   ALD+SSIRS  VRLID QQNM+G+V K +A++M
Sbjct: 72  RFGGGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDEAVRM 131

Query: 138 AEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKELKMGYKID 197
           A+DAELDLV+LSPDADPPVV++MDYSKYRY+ QK+K++QQKK+  TRMDLKELKMGY ID
Sbjct: 132 ADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNID 191

Query: 198 QHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGELATEEAKNF 257
           QHDYSVRLRAA+KFLQDGDKVKVIV++KGRENEFR IAIEL++RFQ E+GELATEE+KNF
Sbjct: 192 QHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNF 251

Query: 258 RDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
           RDRN+FI+L PNK +++K QEPP +K K  A NE SA
Sbjct: 252 RDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASA 276

[Close]

BLAST of CmoCh05G010410 vs. TAIR 10
Match: AT4G30690.2 (Translation initiation factor 3 protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-60
Identity = 131/225 (58.22%), Postives = 156/225 (69.33%), Query Frame = 0


Query: 73  SVFARYGGAPRSSGPAGS----------KRSEDSLALDVSSIRSNNVRLIDEQQNMVGIV 132
           ++  RYGG     G  GS          K SED  +LD+S+IRS  VRLID+QQNM+G+V
Sbjct: 54  AITCRYGG----GGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLV 113

Query: 133 PKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQKKKREQQKKSAATRMDLKE 192
            K +A++ AEDAELDLV+LSPDADPPVVR+MDYS                          
Sbjct: 114 SKEEAVRRAEDAELDLVILSPDADPPVVRMMDYS-------------------------- 173

Query: 193 LKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIVNLKGRENEFRKIAIELVKRFQEELGEL 252
               Y IDQHDYSVR+RAA+KFLQDGDKVKVIVN+KGRENEFR IAIEL++RFQ E+GEL
Sbjct: 174 ----YNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGEL 233

Query: 253 ATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKKKDKPAAVNEVSA 288
            TEE+KNFRDRN+FIVL PNK V++K QEPP KK K  A ++VSA
Sbjct: 234 GTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSA 244

[Close]

BLAST of CmoCh05G010410 vs. TAIR 10
Match: AT1G34360.1 (translation initiation factor 3 (IF-3) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-08
Identity = 66/205 (32.20%), Postives = 104/205 (50.73%), Query Frame = 0


Query: 104 IRSNNVRLIDEQQNMVGIVPKSQAIQMAEDAELDLVVLSPDADPPVVRIMDYSKYRYDLQ 163
           I  + VRL+ E+ + V  V   +A++ A++ + DLV +  DA PPV +I+ YS   Y   
Sbjct: 90  ITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRDAKPPVCKIVKYSLELYKKA 149

Query: 164 K--KKREQQKKSAATRMDLKELKMGYKIDQHDYSVRLRAAKKFLQDGDKVKVIV---NLK 223
           K  K+R + K++ A R D+KE++   KI+  D   +   A K ++ G +VK +      K
Sbjct: 150 KVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDK 209

Query: 224 GRENEFRKIAIELVKRFQEELGELATEEAKNFRDRNVFIVLAPNKAVLQKSQEPPKK--- 283
            +E E  K+ +EL+ RF   +G+ A  E+    DR   +V+     V      PPKK   
Sbjct: 210 HKELEPEKL-LELLFRFTCFIGD-ALVESWPEADRKGAVVI-----VRHAKFGPPKKGGV 269

Query: 284 ---KD---KPAAVNEVSARVEVSEA 295
              KD   K A V E S + + S+A
Sbjct: 270 KLMKDIDIKSARVKEESPKPDSSKA 285

The following BLAST results are available for this feature:

BLAST of CmoCh05G010410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94B52	1.3e-75	68.44	Translation initiation factor IF3-4, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
O82234	2.9e-72	59.93	Translation initiation factor IF3-2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
B2IY66	4.2e-31	44.32	Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PC...	[more]
Q8YNE3	1.6e-30	43.10	Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / ...	[more]
Q3MBH6	1.6e-30	43.10	Translation initiation factor IF-3 OS=Trichormus variabilis (strain ATCC 29413 /...	[more]

BLAST of CmoCh05G010410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3Y5	8.5e-152	100.00	Translation initiation factor IF-3 OS=Cucurbita moschata OX=3662 GN=LOC111450575...	[more]
A0A6J1KDY9	3.5e-145	97.00	Translation initiation factor IF-3 OS=Cucurbita maxima OX=3661 GN=LOC111493999 P...	[more]
A0A6J1DYM5	3.6e-118	82.19	Translation initiation factor IF-3 OS=Momordica charantia OX=3673 GN=LOC11102471...	[more]
A0A0A0LH34	9.9e-116	79.67	Translation initiation factor IF-3 OS=Cucumis sativus OX=3659 GN=Csa_2G036070 PE...	[more]
A0A1S3BV82	1.7e-115	81.21	Translation initiation factor IF-3 OS=Cucumis melo OX=3656 GN=LOC103493630 PE=3 ...	[more]

BLAST of CmoCh05G010410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946541.1	1.8e-151	100.00	translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata]	[more]
KAG6599141.1	4.8e-149	98.03	Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_023547209.1	2.9e-146	97.67	translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. p...	[more]
XP_022999741.1	7.2e-145	97.00	translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima]	[more]
XP_038891171.1	5.2e-119	83.45	translation initiation factor IF3-4, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh05G010410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30690.1	8.9e-77	68.44	Translation initiation factor 3 protein	[more]
AT2G24060.1	2.1e-73	59.93	Translation initiation factor 3 protein	[more]
AT4G30690.2	1.5e-60	58.22	Translation initiation factor 3 protein	[more]
AT1G34360.1	4.0e-08	32.20	translation initiation factor 3 (IF-3) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 179..262 e-value: 2.1E-23 score: 82.1
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	GENE3D	3.30.110.10		coord: 173..270 e-value: 2.2E-24 score: 87.2
IPR036788	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	SUPERFAMILY	55200	Translation initiation factor IF3, C-terminal domain	coord: 178..263
IPR001288	Translation initiation factor 3	TIGRFAM	TIGR00168	TIGR00168	coord: 103..263 e-value: 7.9E-48 score: 160.2
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 68..285
IPR001288	Translation initiation factor 3	HAMAP	MF_00080	IF_3	coord: 90..264 score: 23.12904
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	GENE3D	3.10.20.80		coord: 102..171 e-value: 2.2E-28 score: 100.1
IPR036787	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	SUPERFAMILY	54364	Translation initiation factor IF3, N-terminal domain	coord: 103..171
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 103..169 e-value: 2.7E-26 score: 91.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..283
None	No IPR available	PANTHER	PTHR10938:SF6	TRANSLATION INITIATION FACTOR IF-3	coord: 68..285
IPR019813	Translation initiation factor 3, conserved site	PROSITE	PS00938	IF3	coord: 151..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010410.1	CmoCh05G010410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032790	ribosome disassembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity