CmoCh05G008850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G008850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Photosystem II CP47 reaction center protein
Location	Cmo_Chr05: 6050694 .. 6051381 (-)
RNA-Seq Expression	CmoCh05G008850
Synteny	CmoCh05G008850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATGTTCGTTATACCCTTCATGACTCGTCTAGGAATAACCAATTCATGGGGGGTTGGAGTATCACCCTCCGTTTCTTTCAGTTTCTTAGTAAGAATGGGTGACGGTATTCTGCCTAAATAGTAGACACAGGTAATAAATAAGAGAATACTAAAGATTCGAGCCATAGAATTTCTGAATTCTGACACAAGGTACTTATTAGATCTAATAGAATTATTTTGCTGTATCCAGACTAATATCAATCCAACCCATTTCATGAATAAAATGTGACCAATTAACCAACCAACAAAACTACTTGTTACAAATAACATCTTGTTGTTGCATCGAAACATAGAAATGTTGACTAATCTGACTAACATTGAACTTGGTAAAATGAAATGGTTGAATAATTGAAAAATGAGATTATTCAGGAATACACATTGAATGCTAAGATTACGCATTGAGTTTCTGGTAGTAGATCCATAATCAAAAAAGTGTTTGTGATTGTTCCAGAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA

mRNA sequence

ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA

Coding sequence (CDS)

ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGTATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA

Protein sequence

MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNETKDTVELGQLLYEVYPMLDAEAHNRSI

Homology

[Close]

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot
Match: A9LYC6 (Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot
Match: Q3V508 (Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot
Match: A4QK44 (Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL
Match: A0A4D6NLH0 (Photosystem II CP47 chlorophyll apoprotein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1656 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.5e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN 39
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGITN 62

[Close]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL
Match: A0A2K1Y5F1 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G137100 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.2e-11
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET 41
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+ N +
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMNNNS 64

[Close]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL
Match: B9S1B8 (Photosystem II P680 chlorophyll A apoprotein, putative OS=Ricinus communis OX=3988 GN=RCOM_1655470 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWADSMALYELAVFDPSDPV+DPIWRQG+
Sbjct: 1  MHTALVAGWADSMALYELAVFDPSDPVVDPIWRQGM 36

[Close]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL
Match: A0A7J6HMP4 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019811 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN 39
          MH ALVAGWA SMALYELAVFDPSDPVLDP+W+QGI N
Sbjct: 1  MHTALVAGWAGSMALYELAVFDPSDPVLDPMWKQGITN 38

[Close]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL
Match: A0A2G3B7N7 (Photosystem II CP47 reaction center protein OS=Capsicum chinense OX=80379 GN=BC332_27717 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MHIALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHIALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

[Close]

BLAST of CmoCh05G008850 vs. NCBI nr
Match: QCE14653.1 (photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN 39
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGITN 62

[Close]

BLAST of CmoCh05G008850 vs. NCBI nr
Match: XP_013633081.1 (PREDICTED: photosystem II CP47 reaction center protein-like [Brassica oleracea var. oleracea])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN 39
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGISN 62

[Close]

BLAST of CmoCh05G008850 vs. NCBI nr
Match: PNT08266.1 (hypothetical protein POPTR_013G137100 [Populus trichocarpa])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET 41
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+ N +
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMNNNS 64

[Close]

BLAST of CmoCh05G008850 vs. NCBI nr
Match: EEF42583.1 (Photosystem II P680 chlorophyll A apoprotein, putative [Ricinus communis])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWADSMALYELAVFDPSDPV+DPIWRQG+
Sbjct: 1  MHTALVAGWADSMALYELAVFDPSDPVVDPIWRQGM 36

[Close]

BLAST of CmoCh05G008850 vs. NCBI nr
Match: KAF4396265.1 (hypothetical protein F8388_019811 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN 39
          MH ALVAGWA SMALYELAVFDPSDPVLDP+W+QGI N
Sbjct: 1  MHTALVAGWAGSMALYELAVFDPSDPVLDPMWKQGITN 38

[Close]

BLAST of CmoCh05G008850 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 1  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI 37
          MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Sbjct: 25 MHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60

The following BLAST results are available for this feature:

BLAST of CmoCh05G008850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYC6	1.6e-12	88.89	Photosystem II CP47 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V508	1.6e-12	88.89	Photosystem II CP47 reaction center protein OS=Acorus calamus OX=4465 GN=psbB PE...	[more]
A4QJE1	1.6e-12	88.89	Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJM5	1.6e-12	88.89	Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]
A4QK44	1.6e-12	88.89	Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB P...	[more]

BLAST of CmoCh05G008850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D6NLH0	5.5e-11	89.47	Photosystem II CP47 chlorophyll apoprotein OS=Vigna unguiculata OX=3917 GN=DEO72...	[more]
A0A2K1Y5F1	7.2e-11	82.50	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G137100 PE=3 ...	[more]
B9S1B8	9.4e-11	91.67	Photosystem II P680 chlorophyll A apoprotein, putative OS=Ricinus communis OX=39...	[more]
A0A7J6HMP4	1.2e-10	86.84	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_019811 PE=4 SV=1	[more]
A0A2G3B7N7	1.6e-10	91.67	Photosystem II CP47 reaction center protein OS=Capsicum chinense OX=80379 GN=BC3...	[more]

BLAST of CmoCh05G008850 vs. NCBI nr


Match Name	E-value	Identity	Description
QCE14653.1	1.1e-10	89.47	photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata]	[more]
XP_013633081.1	1.1e-10	89.47	PREDICTED: photosystem II CP47 reaction center protein-like [Brassica oleracea v...	[more]
PNT08266.1	1.5e-10	82.50	hypothetical protein POPTR_013G137100 [Populus trichocarpa]	[more]
EEF42583.1	1.9e-10	91.67	Photosystem II P680 chlorophyll A apoprotein, putative [Ricinus communis]	[more]
KAF4396265.1	2.5e-10	86.84	hypothetical protein F8388_019811 [Cannabis sativa]	[more]

BLAST of CmoCh05G008850 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	1.2e-13	88.89	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..36 e-value: 3.1E-15 score: 55.9
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..36
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 1..36
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008850.1	CmoCh05G008850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006457	protein folding
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0042803	protein homodimerization activity