Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCAGAAATTGCTGAAAACATGAAATCTTTAGTACGGTTGGATTTGAGATTTACAACCATAAAGGAGCTTCCTTCATCAATTAGGTACCTCTTACAACGCTCTTTGATTTAGATTTTTACGGTTGTACAAACTTCATCTCCATTCCTAATACCATTTATTTGTTAAACAATCTTCGGGAGCTTAGCCTTGGTGGGTGTTCTAGATTTGAAATGCTACCCCTCACATGGGACTCAACTATCCATCCAACATGCTCTTCTTCACATCGTGGAAACTTTGTTGAGTTCAGAATTTCCTCATTTAGCAGTTTCAAAAGAGCCTATGTTTTATGAACACCATTACTTAGTTCTTGAAATATGCACCATATCAAAGGCTGATTTTTTGAAAGCTTTATGTAAAGTCACCCCTTTCTTATCTTCTCTATTCTTGTCGGGTAACAAATTCTCATGTCTCCCTAAGTTTTTGTCCTTGAAGAATCTCCAAATAAGGAATGACATGTTTCTTCAAGAAATTCCAAACCTTCCTATGTGTATACAAGAATTGGATGCCATTAGTTGTCAACCTTTGGCAAGAAGTTGA
mRNA sequence
ATGTTTCCAGAAATTGCTGAAAACATGAAATCTTTAGTACGGTTGGATTTGAGATTTACAACCATAAAGGAGCTTCCTTCATCAATTAGCTTAGCCTTGGTGGGTGTTCTAGATTTGAAATGCTACCCCTCACATGGGACTCAACTATCCATCCAACATGCTCTTCTTCACATCGTGGAAACTTTGTTGAGTTCAGAATTTCCTCATTTAGCAGTTTCAAAAGAGCCTATGTTTTATGAACACCATTACTTAGTTCTTGAAATATGCACCATATCAAAGGCTGATTTTTTGAAAGCTTTATGTAAAGTCACCCCTTTCTTATCTTCTCTATTCTTGTCGGGTAACAAATTCTCATGTCTCCCTAAGTTTTTGTCCTTGAAGAATCTCCAAATAAGGAATGACATGTTTCTTCAAGAAATTCCAAACCTTCCTATGTGTATACAAGAATTGGATGCCATTAGTTGTCAACCTTTGGCAAGAAGTTGA
Coding sequence (CDS)
ATGTTTCCAGAAATTGCTGAAAACATGAAATCTTTAGTACGGTTGGATTTGAGATTTACAACCATAAAGGAGCTTCCTTCATCAATTAGCTTAGCCTTGGTGGGTGTTCTAGATTTGAAATGCTACCCCTCACATGGGACTCAACTATCCATCCAACATGCTCTTCTTCACATCGTGGAAACTTTGTTGAGTTCAGAATTTCCTCATTTAGCAGTTTCAAAAGAGCCTATGTTTTATGAACACCATTACTTAGTTCTTGAAATATGCACCATATCAAAGGCTGATTTTTTGAAAGCTTTATGTAAAGTCACCCCTTTCTTATCTTCTCTATTCTTGTCGGGTAACAAATTCTCATGTCTCCCTAAGTTTTTGTCCTTGAAGAATCTCCAAATAAGGAATGACATGTTTCTTCAAGAAATTCCAAACCTTCCTATGTGTATACAAGAATTGGATGCCATTAGTTGTCAACCTTTGGCAAGAAGTTGA
Protein sequence
MFPEIAENMKSLVRLDLRFTTIKELPSSISLALVGVLDLKCYPSHGTQLSIQHALLHIVETLLSSEFPHLAVSKEPMFYEHHYLVLEICTISKADFLKALCKVTPFLSSLFLSGNKFSCLPKFLSLKNLQIRNDMFLQEIPNLPMCIQELDAISCQPLARS
Homology
BLAST of CmoCh05G008820 vs. ExPASy Swiss-Prot
Match:
Q9SZ66 (Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=1 SV=1)
HSP 1 Score: 47.4 bits (111), Expect = 1.8e-04
Identity = 49/163 (30.06%), Postives = 77/163 (47.24%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSISLALVGVLDLKCYPSHGTQLSIQHALLHIVE 60
+FPEI E+M+SL L + T+I E+P + L+ ++K + GT + ++ +
Sbjct: 796 VFPEIKEDMESLEILLMDDTSITEMPKMMHLS-----NIKTFSLCGTSSHVSVSMFFMPP 855
Query: 61 TLLSSEFPHLAVSKEPMFYEHHYLVLEICTISK-ADFLKALCKVTPFLSSLFLSGNKFSC 120
TL S L +S+ C++ K D + L L SL LSGN
Sbjct: 856 TLGCSRLTDLYLSR--------------CSLYKLPDNIGGLSS----LQSLCLSGNNIEN 915
Query: 121 LPK-FLSLKNLQ---IRNDMFLQEIPNLPMCIQELDAISCQPL 159
LP+ F L NL+ ++ L+ +P LP +Q LDA C+ L
Sbjct: 916 LPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESL 935
BLAST of CmoCh05G008820 vs. ExPASy TrEMBL
Match:
A0A6J1G497 (disease resistance protein RPS6-like OS=Cucurbita moschata OX=3662 GN=LOC111450596 PE=4 SV=1)
HSP 1 Score: 196.4 bits (498), Expect = 8.9e-47
Identity = 118/198 (59.60%), Postives = 128/198 (64.65%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSI-------SLALVGVLDLKCYPS--------- 60
MFPEIAENMKSLVRLDL FT IKELPSSI L L G +L P+
Sbjct: 720 MFPEIAENMKSLVRLDLSFTAIKELPSSIRYLTALFDLDLHGCTNLISIPNTIYLLHNLR 779
Query: 61 ---------------------HGTQLSIQHALLHIVETLLSSEFPHLAVSKEPMFYEHHY 120
H T S H + VE +SS + +EPMFYEHHY
Sbjct: 780 ELSLGGCSRFEMLPLTWDSTIHPTCSSSNHG--NFVEFRISS---FSSFKREPMFYEHHY 839
Query: 121 LVLEICTISKADFLKALCKVTPFLSSLFLSGNKFSCLPKFLSLKNLQIRNDMFLQEIPNL 162
LVLE CTIS DFLKALC+VTPFLSSLFLSGNKFSCLPKFLSLKNL+IRNDMFLQEIPNL
Sbjct: 840 LVLENCTISNTDFLKALCEVTPFLSSLFLSGNKFSCLPKFLSLKNLRIRNDMFLQEIPNL 899
BLAST of CmoCh05G008820 vs. ExPASy TrEMBL
Match:
A0A1S3C0A4 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495402 PE=4 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 3.4e-30
Identity = 97/197 (49.24%), Postives = 110/197 (55.84%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSIS-------LALVGVLDLKCYPSHGTQL-SIQ 60
MFP+IAENMKSL+ L L T I+ELPSSI L L G +L PS L S++
Sbjct: 851 MFPKIAENMKSLMSLHLDSTAIRELPSSIGFLTALLLLNLNGCTNLISLPSTIYLLKSLK 910
Query: 61 HALL------------------------HIVETLLSSEFPHLAVSKEPMFYEHHYLVLEI 120
H L I+ET SSEFPHL V KE + + L L
Sbjct: 911 HLYLGGCSRFQMFSHRWDPTTHPVCSFSKIMETSSSSEFPHLLVPKESLCSKFTLLDLRC 970
Query: 121 CTISKADFLKALCKVTPFLSSLFLSGNKF----SCLPKFLSLKNLQIRNDMFLQEIPNLP 162
C IS DFL LCKV PFLSS+ LS NKF SCL KF+SL NLQ+RN FLQEIPNLP
Sbjct: 971 CNISNVDFLXILCKVAPFLSSILLSENKFSSLPSCLHKFMSLWNLQLRNCKFLQEIPNLP 1030
BLAST of CmoCh05G008820 vs. ExPASy TrEMBL
Match:
A0A5A7VCN0 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00680 PE=4 SV=1)
HSP 1 Score: 141.0 bits (354), Expect = 4.4e-30
Identity = 96/197 (48.73%), Postives = 111/197 (56.35%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSIS-------LALVGVLDLKCYPSHGTQL-SIQ 60
MFP+IAENMKSL+ L L T I+ELPSSI L L G +L PS L S++
Sbjct: 825 MFPKIAENMKSLMSLHLDSTAIRELPSSIGFLTALLLLNLNGCTNLISLPSTIYLLKSLK 884
Query: 61 HALL------------------------HIVETLLSSEFPHLAVSKEPMFYEHHYLVLEI 120
H L I+ET SSEFPHL V KE + + L L
Sbjct: 885 HLYLGGCSRFQMFSHRWDPTTHPVCSFSKIMETSSSSEFPHLLVPKESLCSKFTLLDLRC 944
Query: 121 CTISKADFLKALCKVTPFLSSLFLSGNKF----SCLPKFLSLKNLQIRNDMFLQEIPNLP 162
C IS DFL+ LCKV PFLSS+ LS NKF SCL KF+SL NLQ+RN FLQEIPNLP
Sbjct: 945 CNISNVDFLEILCKVAPFLSSILLSENKFSSLPSCLHKFMSLWNLQLRNCKFLQEIPNLP 1004
BLAST of CmoCh05G008820 vs. ExPASy TrEMBL
Match:
A0A0A0LLK3 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 1.3e-29
Identity = 94/197 (47.72%), Postives = 111/197 (56.35%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSIS-------LALVGVLDLKCYPSHGTQL-SIQ 60
MFP+IAENMKSL+ L L T I+ELPSSI L L G +L PS L S++
Sbjct: 853 MFPKIAENMKSLISLHLDSTAIRELPSSIGYLTALLVLNLHGCTNLISLPSTIYLLKSLK 912
Query: 61 HALL------------------------HIVETLLSSEFPHLAVSKEPMFYEHHYLVLEI 120
H L I++T SSEFPHL V KE + + L L+
Sbjct: 913 HLYLGGCSRFQLFSRKWDPTAHPLCSFSKIMDTSSSSEFPHLLVPKESLCSKFTMLDLQC 972
Query: 121 CTISKADFLKALCKVTPFLSSLFLSGNKFS----CLPKFLSLKNLQIRNDMFLQEIPNLP 162
C IS DFL+ LC V PFLSS+ LS NKFS CL KF+SL NLQ+RN FLQEIPNLP
Sbjct: 973 CNISNVDFLEILCNVAPFLSSILLSENKFSSLPPCLHKFMSLWNLQLRNCKFLQEIPNLP 1032
BLAST of CmoCh05G008820 vs. ExPASy TrEMBL
Match:
A0A5D3D437 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00140 PE=4 SV=1)
HSP 1 Score: 124.0 bits (310), Expect = 5.6e-25
Identity = 89/198 (44.95%), Postives = 101/198 (51.01%), Query Frame = 0
Query: 2 FPEIAENMKSLVRLDLRFTTIKELPSSI-------------------------------S 61
FP I ENMKSL LDL FT IKELPSSI
Sbjct: 795 FPTIDENMKSLRHLDLDFTAIKELPSSIGYLTELCTLNLTSCTNLISLPNTIYLLRNLDE 854
Query: 62 LALVGVLDLKCYPSHGTQLSIQ---HALLHIVETLLSSEFPHLAVSKEPMFYEHHYLVLE 121
L L G + +P H SIQ I T S EFPHL V E +F L L+
Sbjct: 855 LLLSGCSRFRIFP-HKWDRSIQPVCSPTKMIETTSWSLEFPHLLVPNESLFSHFTLLDLK 914
Query: 122 ICTISKADFLKALCKVTPFLSSLFLSGNKF----SCLPKFLSLKNLQIRNDMFLQEIPNL 162
C IS A FL+ LC V PFLS L LS NKF SCL KF+SL NL+++N FLQEIPNL
Sbjct: 915 SCNISNAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLWNLELKNCKFLQEIPNL 974
BLAST of CmoCh05G008820 vs. NCBI nr
Match:
XP_022946575.1 (disease resistance protein RPS6-like [Cucurbita moschata])
HSP 1 Score: 196.4 bits (498), Expect = 1.8e-46
Identity = 118/198 (59.60%), Postives = 128/198 (64.65%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSI-------SLALVGVLDLKCYPS--------- 60
MFPEIAENMKSLVRLDL FT IKELPSSI L L G +L P+
Sbjct: 720 MFPEIAENMKSLVRLDLSFTAIKELPSSIRYLTALFDLDLHGCTNLISIPNTIYLLHNLR 779
Query: 61 ---------------------HGTQLSIQHALLHIVETLLSSEFPHLAVSKEPMFYEHHY 120
H T S H + VE +SS + +EPMFYEHHY
Sbjct: 780 ELSLGGCSRFEMLPLTWDSTIHPTCSSSNHG--NFVEFRISS---FSSFKREPMFYEHHY 839
Query: 121 LVLEICTISKADFLKALCKVTPFLSSLFLSGNKFSCLPKFLSLKNLQIRNDMFLQEIPNL 162
LVLE CTIS DFLKALC+VTPFLSSLFLSGNKFSCLPKFLSLKNL+IRNDMFLQEIPNL
Sbjct: 840 LVLENCTISNTDFLKALCEVTPFLSSLFLSGNKFSCLPKFLSLKNLRIRNDMFLQEIPNL 899
BLAST of CmoCh05G008820 vs. NCBI nr
Match:
KAG6598997.1 (Disease resistance-like protein DSC1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 194.9 bits (494), Expect = 5.4e-46
Identity = 117/198 (59.09%), Postives = 128/198 (64.65%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSI-------SLALVGVLDLKCYPS--------- 60
MFP+IAENMKSLVRLDL FT IKELPSSI L L G +L P+
Sbjct: 441 MFPKIAENMKSLVRLDLSFTAIKELPSSIRYLTALFDLDLHGCTNLISIPNTIYLLHNLR 500
Query: 61 ---------------------HGTQLSIQHALLHIVETLLSSEFPHLAVSKEPMFYEHHY 120
H T S H + VE +SS + +EPMFYEHHY
Sbjct: 501 ELSLGGCSRFEMLPLTWDSTIHPTCSSSNHG--NFVEFRISS---FSSFKREPMFYEHHY 560
Query: 121 LVLEICTISKADFLKALCKVTPFLSSLFLSGNKFSCLPKFLSLKNLQIRNDMFLQEIPNL 162
LVLE CTIS DFLKALC+VTPFLSSLFLSGNKFSCLPKFLSLKNL+IRNDMFLQEIPNL
Sbjct: 561 LVLENCTISNTDFLKALCEVTPFLSSLFLSGNKFSCLPKFLSLKNLRIRNDMFLQEIPNL 620
BLAST of CmoCh05G008820 vs. NCBI nr
Match:
XP_023520945.1 (protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like, partial [Cucurbita pepo subsp. pepo])
HSP 1 Score: 194.5 bits (493), Expect = 7.0e-46
Identity = 117/197 (59.39%), Postives = 127/197 (64.47%), Query Frame = 0
Query: 2 FPEIAENMKSLVRLDLRFTTIKELPSSI-------SLALVGVLDLKCYPS---------- 61
FPEIAENMKSLVRLDL FT IKELPSSI L L G +L P+
Sbjct: 773 FPEIAENMKSLVRLDLSFTAIKELPSSIRYLTALFDLDLHGCTNLISIPNTIYLLHNLRE 832
Query: 62 --------------------HGTQLSIQHALLHIVETLLSSEFPHLAVSKEPMFYEHHYL 121
H T S H + VE +SS + +EPMFYEHHYL
Sbjct: 833 LSLGGCSRFEMLPLTWDSIIHPTCSSSNHG--NFVEFRISS---FSSFKREPMFYEHHYL 892
Query: 122 VLEICTISKADFLKALCKVTPFLSSLFLSGNKFSCLPKFLSLKNLQIRNDMFLQEIPNLP 162
VLE CTIS DFLKALC+VTPFLSSLFLSGNKFSCLPKFLSLKNL+IRNDMFLQEIPNLP
Sbjct: 893 VLEKCTISNTDFLKALCEVTPFLSSLFLSGNKFSCLPKFLSLKNLRIRNDMFLQEIPNLP 952
BLAST of CmoCh05G008820 vs. NCBI nr
Match:
XP_038877735.1 (disease resistance protein RPS6-like, partial [Benincasa hispida])
HSP 1 Score: 143.3 bits (360), Expect = 1.8e-30
Identity = 96/197 (48.73%), Postives = 113/197 (57.36%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSIS-------LALVGVLDLKCYPSHGTQL-SIQ 60
+FP+IAENMKSL+ L L FT I+ELPSSI L L G +L PS L S+
Sbjct: 782 LFPKIAENMKSLMSLHLDFTGIRELPSSIGYLTSLLLLNLDGCTNLISLPSTIYLLKSLN 841
Query: 61 HALL------------------------HIVETLLSSEFPHLAVSKEPMFYEHHYLVLEI 120
H L I+ETL SSEFPHL V KE + + L L+
Sbjct: 842 HLRLGGCSRFEMFSHKWDPTTHPVCSFSKIMETLSSSEFPHLLVPKESLCSKFTLLDLQC 901
Query: 121 CTISKADFLKALCKVTPFLSSLFLSGNKF----SCLPKFLSLKNLQIRNDMFLQEIPNLP 162
C I DFL+ LC V PFLSS+ LS NKF SCL KF+SL NLQ+RN FLQEIPNLP
Sbjct: 902 CNIPNVDFLEILCNVAPFLSSILLSENKFSSLPSCLHKFMSLWNLQLRNCKFLQEIPNLP 961
BLAST of CmoCh05G008820 vs. NCBI nr
Match:
XP_008455171.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])
HSP 1 Score: 141.4 bits (355), Expect = 7.0e-30
Identity = 97/197 (49.24%), Postives = 110/197 (55.84%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSIS-------LALVGVLDLKCYPSHGTQL-SIQ 60
MFP+IAENMKSL+ L L T I+ELPSSI L L G +L PS L S++
Sbjct: 851 MFPKIAENMKSLMSLHLDSTAIRELPSSIGFLTALLLLNLNGCTNLISLPSTIYLLKSLK 910
Query: 61 HALL------------------------HIVETLLSSEFPHLAVSKEPMFYEHHYLVLEI 120
H L I+ET SSEFPHL V KE + + L L
Sbjct: 911 HLYLGGCSRFQMFSHRWDPTTHPVCSFSKIMETSSSSEFPHLLVPKESLCSKFTLLDLRC 970
Query: 121 CTISKADFLKALCKVTPFLSSLFLSGNKF----SCLPKFLSLKNLQIRNDMFLQEIPNLP 162
C IS DFL LCKV PFLSS+ LS NKF SCL KF+SL NLQ+RN FLQEIPNLP
Sbjct: 971 CNISNVDFLXILCKVAPFLSSILLSENKFSSLPSCLHKFMSLWNLQLRNCKFLQEIPNLP 1030
BLAST of CmoCh05G008820 vs. TAIR 10
Match:
AT4G12010.1 (Disease resistance protein (TIR-NBS-LRR class) family )
HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 49/163 (30.06%), Postives = 77/163 (47.24%), Query Frame = 0
Query: 1 MFPEIAENMKSLVRLDLRFTTIKELPSSISLALVGVLDLKCYPSHGTQLSIQHALLHIVE 60
+FPEI E+M+SL L + T+I E+P + L+ ++K + GT + ++ +
Sbjct: 796 VFPEIKEDMESLEILLMDDTSITEMPKMMHLS-----NIKTFSLCGTSSHVSVSMFFMPP 855
Query: 61 TLLSSEFPHLAVSKEPMFYEHHYLVLEICTISK-ADFLKALCKVTPFLSSLFLSGNKFSC 120
TL S L +S+ C++ K D + L L SL LSGN
Sbjct: 856 TLGCSRLTDLYLSR--------------CSLYKLPDNIGGLSS----LQSLCLSGNNIEN 915
Query: 121 LPK-FLSLKNLQ---IRNDMFLQEIPNLPMCIQELDAISCQPL 159
LP+ F L NL+ ++ L+ +P LP +Q LDA C+ L
Sbjct: 916 LPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESL 935
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SZ66 | 1.8e-04 | 30.06 | Disease resistance-like protein DSC1 OS=Arabidopsis thaliana OX=3702 GN=DSC1 PE=... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G497 | 8.9e-47 | 59.60 | disease resistance protein RPS6-like OS=Cucurbita moschata OX=3662 GN=LOC1114505... | [more] |
A0A1S3C0A4 | 3.4e-30 | 49.24 | LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO... | [more] |
A0A5A7VCN0 | 4.4e-30 | 48.73 | TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A0A0LLK3 | 1.3e-29 | 47.72 | TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV... | [more] |
A0A5D3D437 | 5.6e-25 | 44.95 | TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
Match Name | E-value | Identity | Description | |
XP_022946575.1 | 1.8e-46 | 59.60 | disease resistance protein RPS6-like [Cucurbita moschata] | [more] |
KAG6598997.1 | 5.4e-46 | 59.09 | Disease resistance-like protein DSC1, partial [Cucurbita argyrosperma subsp. sor... | [more] |
XP_023520945.1 | 7.0e-46 | 59.39 | protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like, partial [Cucurbita pepo subsp... | [more] |
XP_038877735.1 | 1.8e-30 | 48.73 | disease resistance protein RPS6-like, partial [Benincasa hispida] | [more] |
XP_008455171.1 | 7.0e-30 | 49.24 | PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
AT4G12010.1 | 1.3e-05 | 30.06 | Disease resistance protein (TIR-NBS-LRR class) family | [more] |