CmoCh05G008730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G008730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	origin of replication complex subunit 6
Location	Cmo_Chr05: 5813224 .. 5813616 (-)
RNA-Seq Expression	CmoCh05G008730
Synteny	CmoCh05G008730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCCCGCCTTCCCCCCTTCGTTTATCTACAACCTTCTTCCTCCATTACTGTCCAATCCTTCTGCGCTTCCAAGAATCCTTCCTTTTCTTCAATTTCCTCCCTCATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGTAAGCTTTCATCTGCATCTCTTTCAAGTCTTCTCTGATCGGCAATTGTTCAATTTTGTATTTAATCTATATCTCGTTCTTGGTCTTTTTTTGTTTTTAGGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

mRNA sequence

TTTCTTCCCGCCTTCCCCCCTTCGTTTATCTACAACCTTCTTCCTCCATTACTGTCCAATCCTTCTGCGCTTCCAAGAATCCTTCCTTTTCTTCAATTTCCTCCCTCATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

Coding sequence (CDS)

ATGGATCTCTCCAAGATTGCCAGGAAGCTCGATCTTTCCGACTCCGAAACCCTCACCCGGAAAGCTGGGGAATTTCGTCGCCTCTCCGATCTCCAGTTCAATTCTTCCGCTATTGGCGTTGGTGAGGTTTGCAAGGCCATAATCTGTTTGGAAATCGCCGCTACGAGGTGTGGTTTCGATTGGTGA

Protein sequence

MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCGFDW

Homology

[Close]

BLAST of CmoCh05G008730 vs. ExPASy Swiss-Prot
Match: Q9ZVH3 (Origin of replication complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=ORC6 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-14
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S I RKL L +++ L RKA E RRL D QF+SS IGVGE+CKA+ICLEIAATR
Sbjct: 1  MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATR 56

[Close]

BLAST of CmoCh05G008730 vs. ExPASy Swiss-Prot
Match: Q8GSL4 (Origin of replication complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ORC6 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S IA +L LS S  + RKA E RRL D+ F+SS +G+GEVCKAIICLEIAA++
Sbjct: 1  MDMSSIASRLGLSGSRPVVRKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASK 56

[Close]

BLAST of CmoCh05G008730 vs. ExPASy Swiss-Prot
Match: A2YNY4 (Origin of replication complex subunit 6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26966 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.9e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S IA +L LS S  +  KA E RRL D+ F+SS +G+GEVCKAIICLEIAA++
Sbjct: 1  MDMSSIASRLGLSGSRPVVGKAAELRRLCDVTFDSSVLGIGEVCKAIICLEIAASK 56

[Close]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL
Match: A0A6J1I9T7 (origin of replication complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111471366 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL
Match: A0A6J1G325 (origin of replication complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111450377 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL
Match: A0A0A0LKW3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G108700 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCGF 60
          MD   +ARKLDL+DSE+L RKAGEFRRLSDL FNSS IGVGEVCKAIICLEIAATR GF
Sbjct: 1  MDFRNLARKLDLADSESLIRKAGEFRRLSDLHFNSSLIGVGEVCKAIICLEIAATRLGF 59

[Close]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL
Match: A0A6J1DR65 (origin of replication complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111023493 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLS IARKL+LSDSE L RKAGE RRLSDL  NSS IGVGEVCKA+ICLEIAATR G
Sbjct: 1  MDLSDIARKLELSDSENLIRKAGELRRLSDLHLNSSVIGVGEVCKAVICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL
Match: A0A5A7SMQ3 (Origin of replication complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G001810 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MD   IARKLDL+DSE+L RKAGE RRLSDL FNSS IG+GEVCKA+ICLEIAATR G
Sbjct: 1  MDFHNIARKLDLADSESLIRKAGELRRLSDLHFNSSLIGIGEVCKAVICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: XP_022972855.1 (origin of replication complex subunit 6 [Cucurbita maxima])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: KAG7029958.1 (Origin of replication complex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: XP_022946231.1 (origin of replication complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: XP_023545883.1 (origin of replication complex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. NCBI nr
Match: KAG6598989.1 (putative methyltransferase PMT2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 5.0e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRCG 59
          MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR G
Sbjct: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATRLG 58

[Close]

BLAST of CmoCh05G008730 vs. TAIR 10
Match: AT1G26840.1 (origin recognition complex protein 6 )

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-15
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1  MDLSKIARKLDLSDSETLTRKAGEFRRLSDLQFNSSAIGVGEVCKAIICLEIAATR 57
          MD+S I RKL L +++ L RKA E RRL D QF+SS IGVGE+CKA+ICLEIAATR
Sbjct: 1  MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATR 56

The following BLAST results are available for this feature:

BLAST of CmoCh05G008730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH3	3.6e-14	67.86	Origin of replication complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=ORC6 ...	[more]
Q8GSL4	1.5e-12	62.50	Origin of replication complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947...	[more]
A2YNY4	9.9e-12	60.71	Origin of replication complex subunit 6 OS=Oryza sativa subsp. indica OX=39946 G...	[more]

BLAST of CmoCh05G008730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9T7	2.4e-21	98.28	origin of replication complex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111471...	[more]
A0A6J1G325	2.4e-21	98.28	origin of replication complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0LKW3	1.3e-17	83.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G108700 PE=3 SV=1	[more]
A0A6J1DR65	2.4e-16	82.76	origin of replication complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7SMQ3	4.0e-16	79.31	Origin of replication complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CmoCh05G008730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972855.1	5.0e-21	98.28	origin of replication complex subunit 6 [Cucurbita maxima]	[more]
KAG7029958.1	5.0e-21	98.28	Origin of replication complex subunit 6 [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022946231.1	5.0e-21	98.28	origin of replication complex subunit 6 [Cucurbita moschata]	[more]
XP_023545883.1	5.0e-21	98.28	origin of replication complex subunit 6 [Cucurbita pepo subsp. pepo]	[more]
KAG6598989.1	5.0e-21	98.28	putative methyltransferase PMT2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh05G008730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26840.1	2.6e-15	67.86	origin recognition complex protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008721	Origin recognition complex, subunit 6	PFAM	PF05460	ORC6	coord: 3..56 e-value: 7.1E-8 score: 32.1
None	No IPR available	PANTHER	PTHR13394:SF1	BNAC05G50940D PROTEIN	coord: 1..57
IPR020529	Origin recognition complex, subunit 6, metazoa/plant	PANTHER	PTHR13394	ORIGIN RECOGNITION COMPLEX SUBUNIT 6	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008730.1	CmoCh05G008730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0006260	DNA replication
cellular_component	GO:0016020	membrane
cellular_component	GO:0005664	nuclear origin of replication recognition complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016491	oxidoreductase activity