CmoCh05G008580 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G008580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 5564796 .. 5568528 (+)
RNA-Seq ExpressionCmoCh05G008580
SyntenyCmoCh05G008580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATGACAACCATGCAACAGCGAAAGGTATGTGTTTTGTTAAGTATTAAATAATTCTGTTAACATTTCAAATTTTAACTGTTTTCATTCTTGAAAAAAAAATATTTCACAATTTAAGATTTTAGTTCTTTTTTAAATCTATATTAGTTTTTTTTTTATAAGATAAATGTATATTAGTTATAAATTAATATTAAAATAGACAGGATATTGTTGATGTTGATTATCATATCTCTTCTTTTTAAAGAATTGTATAGATTTTTTCTATTTTTTTTTTTTTAATTTTTTAAATTTTAATGTTTACAGATTGGGAATGTATTTTGGTAAGCCGATAATATGTCAAGCTATATATTTGTGTCATGTACGACATGTTGCGTGTCCACTTTTGTGCTTTTGTTTTAAGCTGGTAGTGGCTTAGCCTGTGATAAATACCGAAAATTTAAAACCCTAGAGCCAATTGAAAGAGAACTAGTCTTTGAGAAATGTTTTTTTTTTTTTTTTCCGTAAGAAACAATTTCATGGGGACTCTCTATCAGAATACAGCTGCAAAGTAGAAGGGAAACTCTCCTATTTATATAAAACTGACCACCAAAAAAATAACCTGCATGCTAGTACCTCTAACCAAGTAAGAGCTGTTAGCTAAACTGTGGCTAAAATTCATGTTACCCTAAGATCATCCTAAGTTATTCTTCCAGCTTCGAAAAAAAACTTGCTCTGGCAACAGAATCTTCTTGGCACGAGGTATTCTTAATGGAAGTATCAGAAACTTTTTTTCTTCTTAACGAATGAATAGATTTGAAATCTTAATTATCAGTTCATTTAAGTGTAACATAATGCTGTTGAAAATTTTGAAACCCTAATTGATTTTGATAATGCTGTTGAAAATTCTGAACTCTGATTGATTTTGAATCGGGTATAAATTTTATTGGCCAGCTACTAATGGCATCTGTTTCTAGATGTCAAAACAATTTAACGTTAGGCAAGTGCCTCATGCAGTTGGTTGAGAAATGAATACATTTAAAGGCATAAGAACAATATTTTTTCATTATTATATGTAATTGTAAGCTCTGTATTGGTAGAAGATGCAAGTTTTGATTGTGAAAAGAGGTGAGACTTGATATAAAATTTAACAACATTGATGACTCCTTGCCTGCTCTCTTTCTCAGTACCTTAATCAGCTATCAATCTCATTGGAACTATGCATAAGATTTTATTTGTATGCATACTTCTTGGTTATCGATCTTATTGGAACTATGCATAAGATTTTAATCAGCTATCAATCTTATTGGAACTATGCATAAGATTTTATTTGTATGCATACTTCTTGGTTATCAATCTTATTGGAACTATGCATAAGATTTTAATCAGCTATCAATCTTATTGGAACTATGCATAAGATTTTATTTGTATGCGTACTTCTTGGTTAGTCTCAGTGGAATTATTATTTGTATCCATACATCTTGTTTATGCATTTTTCAATTGGCCATTAGTGTCTTAGTGGAGTGTAATGCAGTTTTTTTTTTTTTTTTTTTTTAATTTATAAATTATATATGTATATATTAAATTCAATGAGAAACCAAGCTTACAAGGGAAATACAAAATGAAAAACCTCAAAAGGAGCCAAACTACCATAATAAGGGGGCTACAACTAAACAATGCAAATGAGACCTAAATGATAAGTTTAAAGCGTTACCCCTGAGGCTCTTGGCTCAAAGAGAGGTGTGAAACCCAAGAGGGGATTACATCTCAATGGGTCTTTCAATCCCTTAATTCTTTAATTGTTCATTTTCCTCAATGGAAGGGTTTAAGTCTAATATCTTTTTTAAGTTTGGGGGGGTTAATTAGAATATGATTCTAATAGCTTATAATTCAAGGGTGTTTTGGCATTTGCATTTATTTATTTTTTTCCTTTTCCAAATCATGCTTGTGTCCAGAAGATGTATTACTGTTGTGTTTCTTAACGTAGAGGTATACAACCTGAGATTAAAAGCATACCTTGCTGATGATTATTAGTTAGAGATATCTTATGCTATTGACGTGATGTGATTTGCCATTGAACTACCATGATGTGTGGTTTCTGTTGTATTTATTGTCACTTTGTTAGGAAGAAAGAAACAAAAGCCACAAGGTTGATCGACATGATGATCAGCGGTAAATGTTCTTATACCTGTTTTTTTTAAATAATTTTCCCTTTTATACTAGTATGTTGTTCATTACCTAGATGCTCTCTTTCAGATCAAAGGAGTGTAGTAGAGAACCTGATAGAGAACCTAGTAGAGACCATGACCGTGGTGATAGTCGTGACCGTGGAAGGTATAATGACCGTGGAAGGTATAATGACCGTAGGAGCAGGGATCGTGATAGGTATAATGATCGGGATCGTTATGACCGGGAACGCATTAGAGACTCAGATTGCTCTTATGATTCTAGAAATTGTCACCGTTCACGCTCACGGTCAACAGACCATGAACATTCAAGGGACTATGATCGTCACAAGTACTGTTCAATGACTATATCAACTTGATCTTGTGTCATTTCTTTGGCCATCGTTCATATTTCACACACTGAGCAAAATATATCTCCATGATATTGCATCAACATTTAATGCACACGATTTGCAGTTAAACAGCCTCGAGTAATGAATTCTTCATCCTTCAGAAAATTGAGATAACAACATAGTGATTACAAGTCTCCTTGGGTTAAATCATATTGATCACATTTATCAAGTTGATACCCTATGTTGTAAGGTCAAATAGCTAAGAATCTTTCGACCTCTTTAATATACATTTTGTATTATCTTCCCCCTTGTCAGTTTTACTAGATTTGTCTTTTAAGAACTATGAGATCCCATATCGATTGGAGAGGAGAACGAAACATTCTTTGTAAGCGTGTGAAAACCTCTCCCTAGCAGACGCGTTATAAAACTTTGAGTGAAAACTCGGAAGGGAAAGCCCTATAAGAAGACAATATCTGCTAGCAGTGAGCTTGGGCTGTTACAACCGCTTCATTTTTCTAGAGCTACTATTTTGTTTCCGTTCTCTTTGCTTCTGGGAATATTTAGGACCTGGGATGCTCTTTTCTACCTACCTAATCCAGGAATTCCTTACCCATTGCATATGCATACATATATGTATATATTTGGTTGGATTTCTTAGAAATTCAAGATTTATATTTATTCTTAATTAATTTTTAAATACCACATGGAGATCATGAGCGGCTCTTCATGTTAGTATTGTATATAATCAGTTTGTTCCTTTTCCCTTGTACCATTTCCCCCTCAATTCTCATGGGTTTTCGCTCTTTATGCAGGCGCCGTGACCGGTACTAAACAGTTTTTACTGTGGATCCAATGGAAGTGAAAGTACAGGTTCATGTTCTGTGTTTCTTCCTCTATTTTGATTGCAGTTGGCTGTATCTTCTCTACTGACTTTATATTTACCACCAGGAGCTTATTTTGACAATAGATTTGAGAGAGAGAGAGGTATGGTTGTGCTGATTACTGGAATTTTATATGTAGCTGTTAGTGGGGAGTAGTTTCCTTGAGGTCTTCTTTTAACACATGGGCTTAAATTATGGGATACATCAATTCTTCATATTCTCATTGGGGAGACTTCATCACCGTATGTTGGTAACATTTGACCTATAACTATTGACCGACCACCGTTTCATGTATTTAGAACCAAAATTCATATGCAGGCCTGATGAACAATTTGTTTCTTTTAATGTTCGCCC

mRNA sequence

ATGGCGAATGACAACCATGCAACAGCGAAAGATTGGGAATGTATTTTGGAAGAAAGAAACAAAAGCCACAAGGTTGATCGACATGATGATCAGCGATGCTCTCTTTCAGATCAAAGGAGTGTAGTAGAGAACCTGATAGAGAACCTAGTAGAGACCATGACCGTGGTGATAGTCGTGACCGTGGAAGGTATAATGACCGTGGAAGGTATAATGACCGTAGGAGCAGGGATCGTGATAGGTATAATGATCGGGATCGTTATGACCGGGAACGCATTAGAGACTCAGATTGCTCTTATGATTCTAGAAATTGTCACCGTTCACGCTCACGGTCAACAGACCATGAACATTCAAGGGACTATGATCGTCACAAGCGCCGTGACCGGTACTAAACAGTTTTTACTGTGGATCCAATGGAAGTGAAAGTACAGGAGCTTATTTTGACAATAGATTTGAGAGAGAGAGAGGTATGGTTGTGCTGATTACTGGAATTTTATATGTAGCTGTTAGTGGGGAGTAGTTTCCTTGAGGTCTTCTTTTAACACATGGGCTTAAATTATGGGATACATCAATTCTTCATATTCTCATTGGGGAGACTTCATCACCGTATGTTGGTAACATTTGACCTATAACTATTGACCGACCACCGTTTCATGTATTTAGAACCAAAATTCATATGCAGGCCTGATGAACAATTTGTTTCTTTTAATGTTCGCCC

Coding sequence (CDS)

ATGGCGAATGACAACCATGCAACAGCGAAAGATTGGGAATGTATTTTGGAAGAAAGAAACAAAAGCCACAAGGTTGATCGACATGATGATCAGCGATGCTCTCTTTCAGATCAAAGGAGTGTAGTAGAGAACCTGATAGAGAACCTAGTAGAGACCATGACCGTGGTGATAGTCGTGACCGTGGAAGGTATAATGACCGTGGAAGGTATAATGACCGTAGGAGCAGGGATCGTGATAGGTATAATGATCGGGATCGTTATGACCGGGAACGCATTAGAGACTCAGATTGCTCTTATGATTCTAGAAATTGTCACCGTTCACGCTCACGGTCAACAGACCATGAACATTCAAGGGACTATGATCGTCACAAGCGCCGTGACCGGTACTAAACAGTTTTTACTGTGGATCCAATGGAAGTGA

Protein sequence

MANDNHATAKDWECILEERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAVTGTKQFLLWIQWK
Homology
[Close]
BLAST of CmoCh05G008580 vs. ExPASy TrEMBL
Match: A0A5D3DFM5 (Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00620 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.3e-21
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 37  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQI 96
           +QRSVVE+LIENLVET+TVVIVV      TVEGIMTVGAGIVIGI IGIVM  +A ETQI
Sbjct: 344 NQRSVVESLIENLVETVTVVIVV------TVEGIMTVGAGIVIGITIGIVMIESATETQI 403

Query: 97  ALMILEIVTVHAHGQQTMNIQGTMIVTSAV 127
           ALMILE+V VHAH QQT+N+QGTMI TS V
Sbjct: 404 ALMILEVVAVHAHDQQTVNVQGTMIATSTV 427

[Close]
BLAST of CmoCh05G008580 vs. NCBI nr
Match: KAG7029944.1 (putative RNA-binding protein Luc7-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-49
Identity = 116/123 (94.31%), Postives = 117/123 (95.12%), Query Frame = 0 

Query: 17  EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAG 76
           EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVV      TVEGIMTVGAG
Sbjct: 348 EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVV------TVEGIMTVGAG 407

Query: 77  IVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAVTGTKQFLLWI 136
           IVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMN+QGTMIVTSAVTGTKQFLLWI
Sbjct: 408 IVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNVQGTMIVTSAVTGTKQFLLWI 464

Query: 137 QWK 140
           QWK
Sbjct: 468 QWK 464

[Close]
BLAST of CmoCh05G008580 vs. NCBI nr
Match: TYK22190.1 (putative RNA-binding protein Luc7-like 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 6.7e-21
Identity = 69/90 (76.67%), Postives = 76/90 (84.44%), Query Frame = 0 

Query: 37  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQI 96
           +QRSVVE+LIENLVET+TVVIVV      TVEGIMTVGAGIVIGI IGIVM  +A ETQI
Sbjct: 344 NQRSVVESLIENLVETVTVVIVV------TVEGIMTVGAGIVIGITIGIVMIESATETQI 403

Query: 97  ALMILEIVTVHAHGQQTMNIQGTMIVTSAV 127
           ALMILE+V VHAH QQT+N+QGTMI TS V
Sbjct: 404 ALMILEVVAVHAHDQQTVNVQGTMIATSTV 427

The following BLAST results are available for this feature:
BLAST of CmoCh05G008580 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G008580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFM53.3e-2176.67Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa ... [more]
BLAST of CmoCh05G008580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029944.12.0e-4994.31putative RNA-binding protein Luc7-like 1 [Cucurbita argyrosperma subsp. argyrosp... [more]
TYK22190.16.7e-2176.67putative RNA-binding protein Luc7-like 2 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of CmoCh05G008580 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008580.1CmoCh05G008580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006376 mRNA splice site selection
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005685 U1 snRNP
molecular_function GO:0003729 mRNA binding