CmoCh05G008490 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G008490
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein 7
LocationCmo_Chr05: 5338499 .. 5339305 (+)
RNA-Seq ExpressionCmoCh05G008490
SyntenyCmoCh05G008490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCTCCACCCTCTTCAAAAGCCTACCAAAGTTTGGTCATTTTGGGGCACCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCATGTAAGTACGTTCGTTAAAAGGGTAAAAATTGAAGAAGTTAGATATTCGAATCTCACATTTCAGATGATGATGTGATGTTTTTGAAGTTAGATATTCGAATCTTACATTTCAGATGATGATGTGATGTTTTTGAAGTTAGATATTCGAATCTCACATTTCAGATGATGATGTGATGTTTTTGAAGTTAGATATTCGAATCTCACATTTCAGATGATGATGTGATGTTTTTGTGCGTCTTTGACAGACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCGAATGAAGGAATGACACCGGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGATCAAAACTCCCAATTTTTTATTTTATTTTTTAAATCAACTGAATCGAAGCTACGAATGAGAGCGATGTTGAAGATAGATAAGTAAATGGGGAATTTGAAAATGCAGGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGGAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCAAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

mRNA sequence

ATGGGAAGCTCCACCCTCTTCAAAAGCCTACCAAAGTTTGGTCATTTTGGGGCACCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCATGTAAATGATGATACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCGAATGAAGGAATGACACCGGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGGAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCAAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

Coding sequence (CDS)

ATGGGAAGCTCCACCCTCTTCAAAAGCCTACCAAAGTTTGGTCATTTTGGGGCACCAGCCATTGCAAGGAGATCACCCACTTCCAACACTTCCCTCCTTTTCGCTTCCAACCCCAAATTTATTCATGTAAATGATGATACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCGAATGAAGGAATGACACCGGGTGAACATATGATGCAGGACAAGGCTTACTCTACTGCAGAACATGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTGAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGGAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACACAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCAAATGCAAAGACTGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

Protein sequence

MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQDGSEAKDAINPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKNRS
Homology
BLAST of CmoCh05G008490 vs. ExPASy Swiss-Prot
Match: Q8LFD5 (Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 54  SEAKDAINPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAME 113
           S  KD++  +A E         Q K    A+  ++   D AG L  +A+     A+EA +
Sbjct: 31  STRKDSVCDKATEA--------QQKVAKKADEGAQTISDAAGNLKDKAKNT---AEEAWD 90

Query: 114 AAKDSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKN 153
             KD+  + KDTV   T+++K+ +KA AKTVE+ MNTKN
Sbjct: 91  KVKDTTEKIKDTVTGKTEETKESIKATAKTVERSMNTKN 118

BLAST of CmoCh05G008490 vs. ExPASy TrEMBL
Match: A0A6J1F3W7 (uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.7e-72
Identity = 150/154 (97.40%), Postives = 150/154 (97.40%), Query Frame = 0

Query: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQDGSEAKDAI 60
           MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIH    TNPPQDGSEAKDAI
Sbjct: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIH----TNPPQDGSEAKDAI 60

Query: 61  NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAH 120
           NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAH
Sbjct: 61  NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAH 120

Query: 121 RAKDTVVETTKDSKQFVKANAKTVEKCMNTKNRS 155
           RAKDTVVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 RAKDTVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

BLAST of CmoCh05G008490 vs. ExPASy TrEMBL
Match: A0A6J1ICL4 (uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.7e-66
Identity = 142/154 (92.21%), Postives = 144/154 (93.51%), Query Frame = 0

Query: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQDGSEAKDAI 60
           MGSSTLFKSLPKFGHFGA  IA RSPTSNTSL FASNPKFIH    TNPPQDGSEAKDAI
Sbjct: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIH----TNPPQDGSEAKDAI 60

Query: 61  NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAH 120
           NPEANEGMT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAH
Sbjct: 61  NPEANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAH 120

Query: 121 RAKDTVVETTKDSKQFVKANAKTVEKCMNTKNRS 155
           RAKD+VVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 RAKDSVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

BLAST of CmoCh05G008490 vs. ExPASy TrEMBL
Match: A0A6J1CSM2 (uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC111014202 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-35
Identity = 100/158 (63.29%), Postives = 113/158 (71.52%), Query Frame = 0

Query: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQD-----GSE 60
           M S TL K+LPKF H GA AIARRS  SN  LL  SNPKF+H    T  PQD       E
Sbjct: 1   MASFTLLKTLPKFCHLGA-AIARRSTASNPILLLPSNPKFMH----TGSPQDAINPGAPE 60

Query: 61  AKDAINPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAA 120
           AKDAINP ANE M PGE MM + AYSTA+HV EK  DM GM+ +   E+S KAK+ MEAA
Sbjct: 61  AKDAINPGANEAMMPGESMMTE-AYSTAQHVREKASDMGGMVXS---EISEKAKQTMEAA 120

Query: 121 KDSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKNR 154
            DSA RAKDTVVE TK+SK+FVKANA++V+K MNTKNR
Sbjct: 121 WDSAQRAKDTVVEATKESKEFVKANAESVKKSMNTKNR 149

BLAST of CmoCh05G008490 vs. ExPASy TrEMBL
Match: A0A2N9J2L7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 78/156 (50.00%), Postives = 107/156 (68.59%), Query Frame = 0

Query: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQDGSEAKDAI 60
           M S +L   LPKFGH GA AIARR+ T N  L  ASNP+ I  + +   P+  S A DA+
Sbjct: 1   MASLSLVTCLPKFGHAGA-AIARRN-TWNPRLFVASNPRLIQASSN---PEASSVATDAL 60

Query: 61  NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK----EAMEAAK 120
              AN+    G+  +++KA+STAEHV++KT+DMAGM+SA AQ+V+ KAK    EA   AK
Sbjct: 61  KQGANDAKKTGD-TVKNKAFSTAEHVTQKTKDMAGMMSATAQDVTEKAKQTAQEAWGTAK 120

Query: 121 DSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKN 153
           D+A +AKDTV+   ++SK+ +K NA+TV++ MNTKN
Sbjct: 121 DTAQKAKDTVLGKAEESKECIKENAETVKESMNTKN 150

BLAST of CmoCh05G008490 vs. ExPASy TrEMBL
Match: A0A7N2KQQ7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.8e-20
Identity = 76/156 (48.72%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHVNDDTNPPQDGSEAKDAI 60
           M S TL  SLPKFGH G+ AI RRS T N  L  A  P+ I  + +   P+  S A DA+
Sbjct: 1   MASLTLIVSLPKFGHAGS-AIVRRS-TWNPRLFAACTPRPIQASSN---PEASSPATDAL 60

Query: 61  NPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAK----AKEAMEAAK 120
              ANE    GE  ++DKA STAEHVS+ T+DMAG +SA AQ+V+ K    A+EA  +AK
Sbjct: 61  KQGANEAKKTGE-TVKDKANSTAEHVSQNTKDMAGKMSATAQDVTEKVKQTAQEAWGSAK 120

Query: 121 DSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKN 153
           D+A +AKD V+  T++SK+ +K +A+ V+  MNTKN
Sbjct: 121 DTAQKAKDNVLGKTEESKESIKESAEAVKNSMNTKN 150

BLAST of CmoCh05G008490 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-06
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0

Query: 54  SEAKDAINPEANEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAME 113
           S  KD++  +A E         Q K    A+  ++   D AG L  +A+     A+EA +
Sbjct: 31  STRKDSVCDKATEA--------QQKVAKKADEGAQTISDAAGNLKDKAKNT---AEEAWD 90

Query: 114 AAKDSAHRAKDTVVETTKDSKQFVKANAKTVEKCMNTKN 153
             KD+  + KDTV   T+++K+ +KA AKTVE+ MNTKN
Sbjct: 91  KVKDTTEKIKDTVTGKTEETKESIKATAKTVERSMNTKN 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LFD51.3e-0436.36Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 P... [more]
Match NameE-valueIdentityDescription
A0A6J1F3W77.7e-7297.40uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 ... [more]
A0A6J1ICL43.7e-6692.21uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE... [more]
A0A6J1CSM24.4e-3563.29uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A2N9J2L76.6e-2350.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1[more]
A0A7N2KQQ76.8e-2048.72Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G13230.19.4e-0636.36Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..131
NoneNo IPR availablePANTHERPTHR47372:SF21LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 3-LIKEcoord: 2..152
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 2..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008490.1CmoCh05G008490.1mRNA