CmoCh05G008360 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G008360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
LocationCmo_Chr05: 5166050 .. 5168524 (-)
RNA-Seq ExpressionCmoCh05G008360
SyntenyCmoCh05G008360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAATATGATGGGTCAAATGTCGCTACCGCGATTAACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTCGGTTCTCAAGATGCTTGGGAGGTGGTCGAAGAACCAAAGGATACCACGGGTTATATGTTGAGGATTATTGGGATTGGGAGTGTCCCACATTGGTTAATTTAGTGGAAGATCATGGGTTTATAAGTGAGGAATACTATCTTCATTGGTATGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTCCTAACATTATACAGCAGCGCAAAACAAGGCATTAAAAGAATTACGATCAAAGGATAAGACAACATTATACATGTTGTTCCGGGCTGTTGATGAGTCGTGCTTTGAGAAGATTGTCAGGGCAACTACTTCAAAAAAAGCGTGGAACACTTTAGAAAAGGTGTTCAAAGGAACCGATTGAGTCAAGCAAGTGCGTCTCCAAACTCTGCGTGGCGAGTTGGAGAGCATGAAGATGAAGGAGTCAGAAAATGTATCTAACTACATTACGCGCGTACAGACTGTGACAAATCAACTAAATCGAAATGGAGAAATGTTACCCGAGATGGGGTTGTGGAGAAGATCTTGAGGTCATTAACCAACAACTTCAAGAATGTTGTATGTGCGATAGAAGAGTCAAATGACCTAACGAAGTTCACGGATGATGAGCTCGCCGGTTCTCTTGAGGCACACGAACAACGTAAGAAAAAGAAGGAGACACTCGATCAAGCGCTTCAGACCAAGGCATCAATAAAAGATGAAAAGGTATGCTCTCAAAATATTCAAGGTAGAGGTCGTGGAAGTCGCGGGAATGGTCGAGGTGGTCAAGGCAGCAGAAATGAAGGACAGTCAAGTCAAGCAAATTGGCGTGGAAGAGGATGTAGTCGAGGAAGAGGCGGCCGATAAATGGTCAAGGCAGCAGAAATGAAGGACAGTCAAGTCAAGCAAATTGGCGTGGAAGAGGATGTAGTCGAGTCGAGGAAGAGGCGGCCGATAAATGGTCAAGGCAGCAGAAATGAAGGACAGTCAAGTCAAGCAAATTGGCGTGGAAGAGGATGTAGTCGAGGAAGAGGCGGCCGATAAAAAATTCAGTGCTACAAATGTAAAAAATATGGCCACTATGCGAATGATTGTAGCTCCAAAAAATATTACAATTGTGGCAGAGTGGGGCACATGTTGCAAAAGATTGTTGAGCTGGAAAAAGGGTGGAAGGAGCAACCAACCTAGCCTTGGAAGACGTAACAAATGAAGGCCTTCTCTTGATGGCTCAAGAAGACAACATCAACAATGACACTCTGTGGTATGTGCAGTCACAAGTACTTATTCAAAGAGATGCACAAGATTGAAGATGGTCATGTGTCATTTGGAGATGCGTCAAAGGTGGAGGTCAAAGACTGAGGTACAATACATTTTCTTGCAAAAGGATGGTCTAATGGGGTCAATCCAAGTGTTTATTACGTACCAGACCTCAAGATCAACATATTGAGTATGGGGCAACTCACAGAGAAAGATTACTCGATATTCTTAAAGGACCCACCTGCTACACCTGAAGGATAAGCAAGGGTGTTTAGTTGCTCAAGTTGAGATAGGAAGAAATCGAATGTACAAATTGAACTCAAGTCCACCATACCTAAATGGTGTGTTAAATGGTGTGAAATTCTCTATTTATGATCAAATAAATTATAAGGATACTAAAAGAATAATAAAAGAAGAGAGCAACAAATACTTAGGGTAAAAAGACAAATATCTAGATATTTGCCTATAATAAAATATCAAATATGATATATATGGTAAACTATAATTTAGTACATAAAATATCAAATATGATATATATGGTAAACTATAATTTAGTACATAAAATATCAAATATGATATATATGGTAAACTATAATTTAGTACTAAATATCCTTAACACCCCCACAAGCTAAGCGTCGGATTTGAACGAACGTGCAGCTTGGATCCGAAAAATTCAAAGAGAGGTCGAGAAACACTCTTCATGAAGATGTCAACAACCTGGTTCAAAGGAGGCGTAGAGAAATACTTGGTTGGCGAAGAGGCCAGTGCGGCGCCCAGATTCCAAAGGTAAATCTCTGTAGAAGGTCGATGGGCTTATCGAGATTCCATATATTTTCGAAGAAAACGCTGATGAGGATCTTGAGATTAGGGTTTCTGTGAAGGATGAAGGGTTGATTGGGAAGAAAATGAGACAGGCTATGTTGGCTAAGAGGAAACCGATTGTGTTGGAGAAAGTGAGGTTGTATGTATAGAGTATGCCAAATGGTGATTTGGAGATTAAAAAGGTGGAGATGAAGAGTAATAAATCGACTTCGCATTTGGCAGCCATGGAGACTGCCCCTGCAGCGTCAAAGCCAGCAGTGGTGGTGGGGAAGAACAATAG

mRNA sequence

ATGGCGAATATGATGGGTCAAATGTCGCTACCGCGATTAACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTCGGTTCTCAAGATGCTTGGGAGGTGGTCGAAGAACCAAAGGATACCACGGACTGTGACAAATCAACTAAATCGAAATGGAGAAATGTTACCCGAGATGGGGTTGTGGAGAAGATCTTGAGGTCATTAACCAACAACTTCAAGAATGTTGTATGTGCGATAGAAGAGTCAAATGACCTAACGAAGTTCACGGATGATGAGCTCGCCGGTTCTCTTGAGGCACACGAACAACGTAAGAAAAAGAAGGAGACACTCGATCAAGCGCTTCAGACCAAGGCATCAATAAAAGATGAAAAGCTTGGATCCGAAAAATTCAAAGAGAGGTCGAGAAACACTCTTCATGAAGATGTCAACAACCTGGTTCAAAGGAGGCGTAGAGAAATACTTGGTTGGCGAAGAGGCCAGTGCGGCGCCCAGATTCCAAAGGATGAAGGGTTGATTGGGAAGAAAATGAGACAGGCTATGTTGGCTAAGAGGAAACCGATTGTGTTGGAGAAAGTGAGCCATGGAGACTGCCCCTGCAGCGTCAAAGCCAGCAGTGGTGGTGGGGAAGAACAATAG

Coding sequence (CDS)

ATGGCGAATATGATGGGTCAAATGTCGCTACCGCGATTAACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTCGGTTCTCAAGATGCTTGGGAGGTGGTCGAAGAACCAAAGGATACCACGGACTGTGACAAATCAACTAAATCGAAATGGAGAAATGTTACCCGAGATGGGGTTGTGGAGAAGATCTTGAGGTCATTAACCAACAACTTCAAGAATGTTGTATGTGCGATAGAAGAGTCAAATGACCTAACGAAGTTCACGGATGATGAGCTCGCCGGTTCTCTTGAGGCACACGAACAACGTAAGAAAAAGAAGGAGACACTCGATCAAGCGCTTCAGACCAAGGCATCAATAAAAGATGAAAAGCTTGGATCCGAAAAATTCAAAGAGAGGTCGAGAAACACTCTTCATGAAGATGTCAACAACCTGGTTCAAAGGAGGCGTAGAGAAATACTTGGTTGGCGAAGAGGCCAGTGCGGCGCCCAGATTCCAAAGGATGAAGGGTTGATTGGGAAGAAAATGAGACAGGCTATGTTGGCTAAGAGGAAACCGATTGTGTTGGAGAAAGTGAGCCATGGAGACTGCCCCTGCAGCGTCAAAGCCAGCAGTGGTGGTGGGGAAGAACAATAG

Protein sequence

MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEPKDTTDCDKSTKSKWRNVTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIKDEKLGSEKFKERSRNTLHEDVNNLVQRRRREILGWRRGQCGAQIPKDEGLIGKKMRQAMLAKRKPIVLEKVSHGDCPCSVKASSGGGEEQ
Homology
BLAST of CmoCh05G008360 vs. ExPASy TrEMBL
Match: A0A6J1GR21 (uncharacterized protein LOC111456728 OS=Cucurbita moschata OX=3662 GN=LOC111456728 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 98/168 (58.33%), Postives = 107/168 (63.69%), Query Frame = 0

Query: 1   MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTT----------- 60
           MANMMGQM LPRLTKTNYENWSIQMKALLGSQDAWEVVE    EPKDTT           
Sbjct: 1   MANMMGQMPLPRLTKTNYENWSIQMKALLGSQDAWEVVEEGFDEPKDTTGYTAAQNKTQK 60

Query: 61  --------------------DCDKSTKSKWRNVTRDG-------VVEKILRSLTNNFKNV 120
                                 +K  K     + R+G       VVEKILRSLT+NF+NV
Sbjct: 61  ELRSKDKAALYMLFRVVDELSFEKIAKIVTNQLNRNGEMLPETRVVEKILRSLTDNFENV 120

Query: 121 VCAIEESNDLTKFTDDELAGSLEAHEQRKKKK-ETLDQALQTKASIKD 126
           +C IEES ++TKF  DELAGSLEAHEQRKKKK ETLDQALQTK  I +
Sbjct: 121 ICVIEESKNMTKFIVDELAGSLEAHEQRKKKKEETLDQALQTKVEIME 168

BLAST of CmoCh05G008360 vs. ExPASy TrEMBL
Match: A0A6J1ICK8 (uncharacterized protein LOC111474389 OS=Cucurbita maxima OX=3661 GN=LOC111474389 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.5e-30
Identity = 107/231 (46.32%), Postives = 122/231 (52.81%), Query Frame = 0

Query: 1   MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVV----EEPKDTT----------- 60
           M NMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEV+    EEPKDTT           
Sbjct: 1   MVNMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVIKEGFEEPKDTTGYTSMQNKALK 60

Query: 61  ---DCDK----------------------STKSKW--------RNVTRDG-------VVE 120
                DK                      ++K  W          + R G       +VE
Sbjct: 61  ELRSKDKAALYMLFRAVVESGFEKIAMATTSKEAWDILEKTVANQLNRKGEVLLETRIVE 120

Query: 121 KILRSLTNNFKN-VVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIK 165
           KILRSLT N +N VVC IEES DL  FT DE+  SLEAHEQ KKKKE LD+ALQTKASI 
Sbjct: 121 KILRSLTYNIENDVVCVIEESKDLATFTVDEVTDSLEAHEQCKKKKEALDRALQTKASIN 180

BLAST of CmoCh05G008360 vs. ExPASy TrEMBL
Match: A0A6J1F7M5 (uncharacterized protein LOC111442874 OS=Cucurbita moschata OX=3662 GN=LOC111442874 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.6e-27
Identity = 93/174 (53.45%), Postives = 103/174 (59.20%), Query Frame = 0

Query: 1   MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDC----DKSTK 60
           MANMMGQM LPRLTKTNYENWSIQMKALL SQDAWEVVE    EPKD T      +KS K
Sbjct: 1   MANMMGQMPLPRLTKTNYENWSIQMKALLSSQDAWEVVEDGFKEPKDITGYMAAQNKSLK 60

Query: 61  -------------------SKWRNVT------RDG-------VVEKILRSLTNNFKNVVC 120
                              S +  +T      R+G       VVEKILRSLT NF+NVVC
Sbjct: 61  ELRSKDKAALYMLFQAVEESGFEKITVANQLNRNGEMLPETRVVEKILRSLTENFENVVC 120

Query: 121 AIEESNDLTKFTDDELAGSLEAHEQ------------RKKKKETLDQALQTKAS 123
           AIEES DL KFT DELAGSLEAHEQ            ++K +ET++ AL    S
Sbjct: 121 AIEESKDLAKFTVDELAGSLEAHEQCKMGHYARDCRAKEKVEETINLALDDPTS 174

BLAST of CmoCh05G008360 vs. ExPASy TrEMBL
Match: A0A151RNB3 (CCHC-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_034467 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 99/197 (50.25%), Postives = 112/197 (56.85%), Query Frame = 0

Query: 1   MANMMGQMSLPRLTKT-NYENWSIQMKALLGSQDAWEVV----EEPKDTT-------DCD 60
           MA++   + LPRLTK  NY+NWSIQMKALLGSQDAWEVV    EEPK+T           
Sbjct: 1   MASVTNFLPLPRLTKAKNYDNWSIQMKALLGSQDAWEVVQEGFEEPKNTMGYLVAQHKTL 60

Query: 61  KSTKSK--------WRNVTRDG------------------------------------VV 120
           K T+SK        +R V   G                                    VV
Sbjct: 61  KETRSKDKAALYLLYRAVDESGFEKIARASTSKEARNTRVQTLLNQLNQNGQTLTNVRVV 120

Query: 121 EKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKE--TLDQALQTKAS 139
           EKILRSLTN+FKNV+CAIEES DLT  T +ELA SLEAHEQRKKKKE   L+QALQ KAS
Sbjct: 121 EKILRSLTNSFKNVICAIEESKDLTMLTVNELARSLEAHEQRKKKKEEKILEQALQIKAS 180

BLAST of CmoCh05G008360 vs. ExPASy TrEMBL
Match: A0A6A3AD07 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilonHSYRG00411 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26
Identity = 102/235 (43.40%), Postives = 114/235 (48.51%), Query Frame = 0

Query: 1   MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEP------------------K 60
           MANM GQM LPRLTK NYENWSIQMKALLGSQDAWEVVEE                   K
Sbjct: 1   MANMTGQMLLPRLTKANYENWSIQMKALLGSQDAWEVVEEGFEEPTTTTGYTTAQTKALK 60

Query: 61  DTTDCDK----------------------STKSKW------------------------- 120
           +    DK                      ++K  W                         
Sbjct: 61  EARSKDKAALYMLFRAVDESGFEKIAGAATSKEAWDILGKVFKGANRVKQVRLQTLRGEL 120

Query: 121 --------------------------RN---VTRDGVVEKILRSLTNNFKNVVCAIEESN 139
                                     RN   +T   VVEKILRSLT+NF+NVVCAIEES 
Sbjct: 121 ESIKLKELESVSDYITRVQTVVNQLNRNGEALTEARVVEKILRSLTDNFENVVCAIEESK 180

BLAST of CmoCh05G008360 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 2.0e-06
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDCDKSTKSKWR 58
          MA+      +P LTK+NY+NWS++MKA+LG+ D WE+VE    EP++     ++ K   R
Sbjct: 1  MASNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLR 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GR213.0e-3458.33uncharacterized protein LOC111456728 OS=Cucurbita moschata OX=3662 GN=LOC1114567... [more]
A0A6J1ICK83.5e-3046.32uncharacterized protein LOC111474389 OS=Cucurbita maxima OX=3661 GN=LOC111474389... [more]
A0A6J1F7M53.6e-2753.45uncharacterized protein LOC111442874 OS=Cucurbita moschata OX=3662 GN=LOC1114428... [more]
A0A151RNB31.8e-2650.25CCHC-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_034467 PE=4 ... [more]
A0A6A3AD072.3e-2643.40Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110483pilon... [more]
Match NameE-valueIdentityDescription
AT1G48720.12.0e-0640.98unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 106..126
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 62..150
NoneNo IPR availablePANTHERPTHR34222:SF30SUBFAMILY NOT NAMEDcoord: 62..150
IPR025314Domain of unknown function DUF4219PFAMPF13961DUF4219coord: 13..39
e-value: 4.6E-10
score: 39.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008360.1CmoCh05G008360.1mRNA