CmoCh05G008170 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G008170
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ubiquitin domain-containing protein 7SL RNA2-like
Location	Cmo_Chr05: 4905527 .. 4906014 (+)
RNA-Seq Expression	CmoCh05G008170
Synteny	CmoCh05G008170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCAACCCAACGCCTCCCTTGCCGACTTACAGGATCAACGTTCCTTGCGTGACAGCGAGATGTTGGAGAATTCCGAGGTTGATGTTTGTTTGCGGCCGTCGCCTATGGTTTCAACCGCTGCGCCCAAGATGACAACGCTGCCGCCGTCGTAGCCGCCGACGACAACGACAATGACAACGACGACGACAGTGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAACAAGTTGAAAGTAATGGTGCAACCGAAATTTGGGAATCAAAGATACCAATGGAAGTGAACCCAACGGATAACATGGGGAAATTGAAGAAAGAGCTGCAAAAGCTACAGCAGAGACTACATTTTCATCTGCCACCAGAGGGTTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCGTCCGTTGGCATGGTGTGGCCCACAGTGATACCATTGAGATCTTCAATGGCAGCGTTTCTAGCGGATCTTAA

mRNA sequence

ATGCTCCAACCCAACGCCTCCCTTGCCGACTTACAGGATCAACATGACAACGCTGCCGCCGTCGTAGCCGCCGACGACAACGACAATGACAACGACGACGACAGTGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAACAAGTTGAAAGTAATGGTGCAACCGAAATTTGGGAATCAAAGATACCAATGGAAGTGAACCCAACGGATAACATGGGGAAATTGAAGAAAGAGCTGCAAAAGCTACAGCAGAGACTACATTTTCATCTGCCACCAGAGGGTTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCGTCCGTTGGCATGGTGTGGCCCACAGTGATACCATTGAGATCTTCAATGGCAGCGTTTCTAGCGGATCTTAA

Coding sequence (CDS)

ATGCTCCAACCCAACGCCTCCCTTGCCGACTTACAGGATCAACATGACAACGCTGCCGCCGTCGTAGCCGCCGACGACAACGACAATGACAACGACGACGACAGTGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAACAAGTTGAAAGTAATGGTGCAACCGAAATTTGGGAATCAAAGATACCAATGGAAGTGAACCCAACGGATAACATGGGGAAATTGAAGAAAGAGCTGCAAAAGCTACAGCAGAGACTACATTTTCATCTGCCACCAGAGGGTTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCGTCCGTTGGCATGGTGTGGCCCACAGTGATACCATTGAGATCTTCAATGGCAGCGTTTCTAGCGGATCTTAA

Protein sequence

MLQPNASLADLQDQHDNAAAVVAADDNDNDNDDDSGCDGGNEWVVEEQVESNGATEIWESKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDTIEIFNGSVSSGS

Homology

[Close]

BLAST of CmoCh05G008170 vs. ExPASy Swiss-Prot
Match: Q9ZT95 (Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-06
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 62  IPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDTI 121
           I +EVN  DN+ +L+KEL K+Q+R   +LP E F  +     + E +S +W+ VA  DTI
Sbjct: 199 IHVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELPLTETKSFKWNRVADGDTI 258

Query: 122 EI 124
           EI
Sbjct: 259 EI 260

[Close]

BLAST of CmoCh05G008170 vs. ExPASy Swiss-Prot
Match: Q9ZQZ6 (Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 62  IPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDTI 121
           I +EVN  DN+ +L+KEL K+Q+R   +LP E F  +     + E +S +W+ VA  DTI
Sbjct: 198 IQVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELPLIETKSFKWNRVADGDTI 257

Query: 122 EI 124
           E+
Sbjct: 258 EL 259

[Close]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL
Match: A0A6J1I9Y4 (ubiquitin domain-containing protein 7SL RNA2-like OS=Cucurbita maxima OX=3661 GN=LOC111471417 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEV+PTDN+GKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRS RWHGVAHSD
Sbjct: 43  SKIPMEVSPTDNVGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHSD 102

Query: 120 TIEIFNGSVSSGS 133
           +IEIFNGSVS  S
Sbjct: 103 SIEIFNGSVSGES 115

[Close]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL
Match: A0A1S3AZZ9 (uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEVNPTDN+G+LKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRS RWHGVAH D
Sbjct: 126 SKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGD 185

Query: 120 TIEIFNGSVSSGS 133
           TIEIFNG+++ GS
Sbjct: 186 TIEIFNGTITGGS 198

[Close]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL
Match: A0A6J1IPZ4 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=LOC111478395 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.3e-29
Identity = 82/148 (55.41%), Postives = 94/148 (63.51%), Query Frame = 0


Query: 1   MLQPNASLADLQDQHDNAAAVVAADDNDNDNDDDSGCDGGNEWV---------------- 60
           MLQ NAS  +LQDQ          D   ++N +   C   +  V                
Sbjct: 115 MLQSNASPTELQDQRS------LRDSEMSENSEVEVCLRPSPTVSTAALGMTTPPPQPGS 174

Query: 61  VEEQVESNGATEIWESKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVM 120
            + +++     +   SKIPMEVNPTDN+G+LKKELQKLQQRLHFHLPPEGFFFIYDRDVM
Sbjct: 175 SKNKLKVMVQPKFGNSKIPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVM 234

Query: 121 DEDRSVRWHGVAHSDTIEIFNGSVSSGS 133
           DEDRS RWHGVAH DTIEIFNGSVS GS
Sbjct: 235 DEDRSFRWHGVAHGDTIEIFNGSVSGGS 256

[Close]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL
Match: A0A6J1GE65 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 GN=LOC111453369 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 9.0e-29
Identity = 82/141 (58.16%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 1   MLQPN-ASLADLQDQH--------DNAAAVVAADDNDNDNDDDSGCDGGNEWVVEEQVES 60
           MLQ N AS  +LQDQ         +N+   V    +   +    G   G+    + +++ 
Sbjct: 111 MLQSNAASPTELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSS---KNKLKV 170

Query: 61  NGATEIWESKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVR 120
               +   SKIPMEVNPTDN+G+LKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRS R
Sbjct: 171 MVQPKFGNSKIPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFR 230

Query: 121 WHGVAHSDTIEIFNGSVSSGS 133
           WHGVAH DTIEIFNGSVS GS
Sbjct: 231 WHGVAHGDTIEIFNGSVSGGS 248

[Close]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL
Match: A0A6J1CMB8 (actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 61  KIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDT 120
           KIPMEVN +DN+G+LKKELQKLQQRLHFHLP EGFFFIYDRDVMDEDRS RWHGVAH DT
Sbjct: 186 KIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGVAHGDT 245

Query: 121 IEIFNGSVSSGS 133
           IEIFNGSV+ GS
Sbjct: 246 IEIFNGSVTGGS 257

[Close]

BLAST of CmoCh05G008170 vs. NCBI nr
Match: KAG6603761.1 (Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-31
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEVNPTDN+G+LKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRS RWHGVAH D
Sbjct: 199 SKIPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGD 258

Query: 120 TIEIFNGSVSSGS 133
           TIEIFNGSVS GS
Sbjct: 259 TIEIFNGSVSGGS 271

[Close]

BLAST of CmoCh05G008170 vs. NCBI nr
Match: XP_022972905.1 (ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita maxima])

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEV+PTDN+GKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRS RWHGVAHSD
Sbjct: 43  SKIPMEVSPTDNVGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHSD 102

Query: 120 TIEIFNGSVSSGS 133
           +IEIFNGSVS  S
Sbjct: 103 SIEIFNGSVSGES 115

[Close]

BLAST of CmoCh05G008170 vs. NCBI nr
Match: XP_023543067.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-29
Identity = 81/140 (57.86%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MLQPNASLADLQDQH--------DNAAAVVAADDNDNDNDDDSGCDGGNEWVVEEQVESN 60
           MLQ NAS  +LQDQ         +N+   V    +   +    G   G+    + +++  
Sbjct: 115 MLQSNASTTELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSS---KNKLKVM 174

Query: 61  GATEIWESKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRW 120
              +   SKIPMEVNPTDN+G+LKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRS RW
Sbjct: 175 VQPKFGNSKIPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRW 234

Query: 121 HGVAHSDTIEIFNGSVSSGS 133
           HGVA  DTIEIFNGSVS GS
Sbjct: 235 HGVAQGDTIEIFNGSVSGGS 251

[Close]

BLAST of CmoCh05G008170 vs. NCBI nr
Match: XP_008439960.1 (PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEVNPTDN+G+LKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRS RWHGVAH D
Sbjct: 126 SKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGD 185

Query: 120 TIEIFNGSVSSGS 133
           TIEIFNG+++ GS
Sbjct: 186 TIEIFNGTITGGS 198

[Close]

BLAST of CmoCh05G008170 vs. NCBI nr
Match: XP_004134970.1 (ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hypothetical protein Csa_002851 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 4.9e-29
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           SKIPMEVNPTDN+G+LKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRS RWHGVAH D
Sbjct: 125 SKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGD 184

Query: 120 TIEIFNGSVSSGS 133
           TIEIFNG+++ GS
Sbjct: 185 TIEIFNGTITGGS 197

[Close]

BLAST of CmoCh05G008170 vs. TAIR 10
Match: AT4G05230.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-19
Identity = 55/130 (42.31%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 3   QPNASLADLQDQHDNAAAVVAADDNDNDNDDDSGCDGGNEWVVEEQVESNGATEIWESKI 62
           Q N++       H++   +  +++N+N+N             +   V     T     KI
Sbjct: 91  QSNSTEQTSNGHHESTVMIPMSNNNNNNNPKK----------LRVMVLPKSGTR----KI 150

Query: 63  PMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDTIE 122
           P++VN  DN+G+L+KEL K+QQR    LP EG+FFIY ++VMDE+RS RWH V   DTIE
Sbjct: 151 PVDVNAGDNVGELRKELAKIQQRFQLSLPQEGYFFIYKQNVMDENRSFRWHRVDQGDTIE 206

Query: 123 IFNGSVSSGS 133
           IFNGSVS GS
Sbjct: 211 IFNGSVSGGS 206

[Close]

BLAST of CmoCh05G008170 vs. TAIR 10
Match: AT4G03370.1 (Ubiquitin family protein )

HSP 1 Score: 67.8 bits (164), Expect = 7.5e-12
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 61  KIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDT 120
           +I +EVN   N+  L+KEL K+Q+R   +LP EGFFFI+ +DV+ ED+S   + VA  DT
Sbjct: 212 RIQVEVNVLSNVEVLRKELVKMQERGELNLPHEGFFFIHKQDVLREDQSFMANRVAPGDT 271

Query: 121 IEIFNGSVS 130
           IEIF G V+
Sbjct: 272 IEIFQGYVT 280

[Close]

BLAST of CmoCh05G008170 vs. TAIR 10
Match: AT4G03350.1 (ubiquitin family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-07
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 62  IPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSDTI 121
           I +EVN  DN+ +L+KEL K+Q+R   +LP E F  +     + E +S +W+ VA  DTI
Sbjct: 198 IQVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELPLIETKSFKWNRVADGDTI 257

Query: 122 EI 124
           E+
Sbjct: 258 EL 259

[Close]

BLAST of CmoCh05G008170 vs. TAIR 10
Match: AT2G32350.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.3e-07
Identity = 23/70 (32.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 60  SKIPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSVRWHGVAHSD 119
           ++IP+E+  T  + ++++ LQ  +      LP + + F++ + +M E+ S+RWHGV + D
Sbjct: 174 ARIPVEIKDTCTISEMREGLQANKT-----LPRDEYIFVHKQRIMRENCSLRWHGVENGD 233

Query: 120 TIEIFNGSVS 130
           T+ +F GS+S
Sbjct: 234 TLFVFKGSIS 238

[Close]

BLAST of CmoCh05G008170 vs. TAIR 10
Match: AT4G03360.1 (Ubiquitin family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 62  IPMEVNPTDNMGKLKKELQKLQQRLHFHLPPEGFFFI--YDRDVMDEDRSVRWHGVAHSD 121
           I +EV   DN+ +L+KEL K+Q+R   +LP   ++ I  + + V+ ED+S   +GVA+ D
Sbjct: 211 IQVEVTADDNVEELRKELVKMQERGELNLPQGMYYLIHKHKQAVLHEDQSFLTNGVAYGD 270

Query: 122 TIEIFNGSV 129
           TI+I  G V
Sbjct: 271 TIQISQGYV 279

The following BLAST results are available for this feature:

BLAST of CmoCh05G008170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT95	1.2e-06	43.55	Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9ZQZ6	2.7e-06	41.94	Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmoCh05G008170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9Y4	1.3e-30	91.78	ubiquitin domain-containing protein 7SL RNA2-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3AZZ9	2.4e-29	84.93	uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=...	[more]
A0A6J1IPZ4	5.3e-29	55.41	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GE65	9.0e-29	58.16	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1CMB8	1.5e-28	87.50	actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4...	[more]

BLAST of CmoCh05G008170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603761.1	2.3e-31	93.15	Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma su...	[more]
XP_022972905.1	2.6e-30	91.78	ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita maxima]	[more]
XP_023543067.1	3.7e-29	57.86	biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008439960.1	4.9e-29	84.93	PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo]	[more]
XP_004134970.1	4.9e-29	84.93	ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hyp...	[more]

BLAST of CmoCh05G008170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05230.1	2.2e-19	42.31	Ubiquitin-like superfamily protein	[more]
AT4G03370.1	7.5e-12	50.72	Ubiquitin family protein	[more]
AT4G03350.1	1.9e-07	41.94	ubiquitin family protein	[more]
AT2G32350.1	4.3e-07	32.86	Ubiquitin-like superfamily protein	[more]
AT4G03360.1	1.2e-06	40.58	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 52..124 e-value: 2.4E-6 score: 29.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 49..131
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 49..131
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 60..122 e-value: 1.2E-5 score: 25.0
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 60..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008170.1	CmoCh05G008170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding
molecular_function	GO:0070628	proteasome binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding