CmoCh05G007820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G007820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 4482594 .. 4485063 (+)
RNA-Seq ExpressionCmoCh05G007820
SyntenyCmoCh05G007820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTGTACGCGACTTGGTTCAGCACCCGCAACCTGATCCATCCATTTGACCTAACTCAATCTTGCACACCAACAGGAACACACCACATATCATTACGAGAATAATCGCAAAAATTCTTACACTACTGAGAATCGAATGCACGTCGTGGGATTTGATATGTCCAATCAACGCGTGCCACATGTCACACATCAGGCACGACTTTTTTGCCTTAGGCATGTGGTACTTGCGCATGAGGGTCGCATGTGGTGAACCTATACTCACGTGTGAGGGTGTGTGCAAGGAGAGCTTTATTCCATTTAACCTTTGTTTGTGAGTATTTTGTCTCGATTTTGATACTAACCCTAATTTTGCTCGAATTAAGACCTACGGAAAAAAATTTAGAAATTTTGGAACCTCTAACACACAGAAAAAAGCTAGCTCATGAAAGCACGAGTCATCTATGTAAGTAGCCATACGGACTTTAAGCAAGTAATACTTGTAGGGATTGCTAAAACGTGCAAACATGCAACATTCCTTACATTAGGTAGTCTGAAATGCATGTTTAGGACTACAGAATGGTAATTTTGGATCTGTATACATTGTTTGCATGCTATGAAAATTTAACGTAATGCCCCAAAGAAGAGATTACAAGATGCAAGTTGGACAACATCGACAAGTAAACTATGTAAGATGTAAAAAATTACCAAAATACCCCCTGAGATAAGATTTGTGATGAATGCTATTTTAAATTCTTTCCATTGTGTTATAAGTGAGGATGGACTATACCTCGTTAGGACTTGCGTGTTTCTCGTGTTGTATGCTTTTAATTCTCGTGAAATTTTGTCGTGTTGTTGTACTTTTATTTTAATTTTAATTTTTACTTTTATTTGCCTTCGTCTTGTCTTTGAATCACAGTTCGAGATTCGAAACCTTGAAAATCGGATCGTGACAATGCACGTCTTATAGGAAATTCATGTCATGAAAAATATGAAAGTATTGTATATCATAGCTCATGTACCATGATTTTAAATGCACGACCTCATACATGTATGCCTTTTATTTGCTTTCATCTTGTCTTTTAGTCACGGTCTGAAATTCGAAACTCGAAAATCGAGTCCTGACCATGCATGTTTTATAGGGAATTCATGTCACGAAAAATATGAAAGGGTTATGTGCTTCATAGCTCATGTACCATTATTTTAAATGCAGGACCTCGTATATGATTGTCACAAGCATGACTTACTTATCTAATATATAACATGCGAACATGCACACCACGATATGATACACATTTCTTTCTTATGGTTTTTGTGTATATTAGCCCGTAGTTAGACATAGTGTAACTGTCACGATCAAATTTTCGAGGTTCCGTGTAACAGTTCAAGTTCACTGTTAGCAAATAATGTCCGCTTTTGCCCGTTACGTATTGTTATCAGCATCACGGTTTTAAAATGTGTCTATTATGAAGAGGGTTATACTCTAATTAGTGTCTCGCACCTTCCAGTGACTGGCTCTGATACCATTTGTAACAACTCATGTTCACCGCTAATAGATATTATTCACTTTGGCCCGTTATGTATCGTCGTCAGCCTCACAGTTTAAAAACAAGTCGGTTAGGGAGAAGGTTCCACACCTTTATAAGGAATGCTTTGTTCCCCTCTCCACTGATGTTGGATCTTACAATAGCAAATCAGAGTGGCGCTGCGGAAGCGTGGTGACCCCATAACCCACAGGTTGAAACTTGGCAGCTTTGATATTATTTCTAAACCCGAAACCTAGCTCTGATACCATTTCTACACAGCCCAGATATTATTTCTAAACCCGAAACCTAGCTCTGATACCATTTCTACACAGCCCATCTATTCTACGCAGGATGTTTTGTTTTCATGAGCGAAATAAGTATCTATTAATATTGTTTACTAATATTAACACAATTTTTCCATAGAAGTGTTGGTTTTCCAAAACCAAATTTACACCATTACTTTACCTTTTATGGCTTCTTTAACACTCTGTGCCTTCTAAATTAACACTATAAATAATCACAGTTCTTAATTTTAAAAAACACACCCTTCTCAGTTATTAATCTCCTACAACTAAAAATATTCACAAAAGAAATTTAAAACACATGGCAACTCATAAGCTTGTTACGATGTTCATGGTTATCCTCATCATTTTCTCTTCTTTTGTATCCTCAGGTATGCTTTGATTCATAATCTTTATTTTTTTATGTGTTCTTTTGTTAGAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA

mRNA sequence

ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA

Coding sequence (CDS)

ATGACGCGTGTTGGGAAGATTCGACCTGACTCGTCTCCTTCATTCGACTTAATAATATTTCAGGCAACCTTAATCTTTGGTAATATGGCAGCCAAAGGAGACGTGTTCATGAATTGTATTGGACCGTGTTCTGACACTTACGATCACTATTCATGTTATAATGATTGTGTGGAACAGAATGAAGGTGCTGGATTTTGTTATCCCAAACTGGGAGACGATTCTAATGAAAAAGATTGTTGTTGCAATTATTGA

Protein sequence

MTRVGKIRPDSSPSFDLIIFQATLIFGNMAAKGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCNY
Homology
[Close]
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match: A0A0A0LKF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.9e-13
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 29 MAAKGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          M AKGD+  ++C+ PCSDTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 1  MTAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 53

[Close]
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match: A0A0A0LHG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.7e-13
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 24 LIFGNMAA--KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCC 83
          +IF  +A+  KGDV  ++C+ PCSDTYD  SCYNDC+++N GAGFCYPKL   S +KDCC
Sbjct: 15 MIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKL--PSTDKDCC 74

[Close]
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match: A0A0A0LJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 32 KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          KGDV  ++C+ PC DTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 25 KGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 74

[Close]
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match: A0A0A0L1R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 32 KGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +GD   NC+ PCS+      C   C+EQ+EGAGFC PKL   S+ K CCCN
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75

[Close]
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match: A0A5A7TJH1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00010 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 25/51 (49.02%), Postives = 30/51 (58.82%), Query Frame = 0 

Query: 31 AKGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCC 82
          ++G    NCI PCS+TY   SCY DC   N+G G C PK    S+E  CCC
Sbjct: 24 SEGQGLWNCIRPCSETYKSLSCYVDCGALNKGTGACIPK-RPVSDEYVCCC 73

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: KAE8651701.1 (hypothetical protein Csa_006400, partial [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.5e-15
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0 

Query: 24 LIFGNMAAKGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +IFG+M AKGDV  M+C+ PCSDTYD  SCYNDC+++N GAGFCYPKL   S +KDCCC+
Sbjct: 7  IIFGDMIAKGDVLNMHCVQPCSDTYDDESCYNDCIKENLGAGFCYPKL--PSTDKDCCCS 64

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: KAG6586428.1 (hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 30 AAKGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +AKGD+FM CI PC D +D  SCY+DCV  N+GAGFCYPKL   +NEKDCCCN
Sbjct: 22 SAKGDMFMECIRPCVDAFDDDSCYDDCVRANKGAGFCYPKLPSVTNEKDCCCN 74

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: KAE8651697.1 (hypothetical protein Csa_006343 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 32 KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          KGDV  +NC+ PCSDTYD  SCYNDC+ +N GAGFCYPKL   S +KDCCCN
Sbjct: 25 KGDVLNVNCVRPCSDTYDDESCYNDCIRENLGAGFCYPKL--PSTDKDCCCN 74

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: KGN61228.1 (hypothetical protein Csa_006463 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 24 LIFGNMAA--KGDVF-MNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCC 83
          +IF  +A+  KGDV  ++C+ PCSDTYD  SCYNDC+++N GAGFCYPKL   S +KDCC
Sbjct: 15 MIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKL--PSTDKDCC 74

[Close]
BLAST of CmoCh05G007820 vs. NCBI nr
Match: KGN54497.1 (hypothetical protein Csa_012842 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 32 KGDVFMNCIGPCSDTYDHYSCYNDCVEQNEGAGFCYPKLGDDSNEKDCCCN 83
          +GD   NC+ PCS+      C   C+EQ+EGAGFC PKL   S+ K CCCN
Sbjct: 25 EGDDLWNCVIPCSNNNGDILCNTACIEQDEGAGFCVPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
BLAST of CmoCh05G007820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G007820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKF51.9e-1365.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0LHG95.7e-1361.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG51.1e-1165.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0L1R83.0e-0650.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G339000 PE=4 SV=1[more]
A0A5A7TJH16.3e-0449.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CmoCh05G007820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651701.12.5e-1566.67hypothetical protein Csa_006400, partial [Cucumis sativus][more]
KAG6586428.12.1e-1467.92hypothetical protein SDJN03_19161, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8651697.11.2e-1269.23hypothetical protein Csa_006343 [Cucumis sativus][more]
KGN61228.11.2e-1261.29hypothetical protein Csa_006463 [Cucumis sativus][more]
KGN54497.16.2e-0650.98hypothetical protein Csa_012842 [Cucumis sativus][more]
BLAST of CmoCh05G007820 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G007820.1CmoCh05G007820.1mRNA