CmoCh05G007400 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G007400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 3883807 .. 3887960 (-)
RNA-Seq ExpressionCmoCh05G007400
SyntenyCmoCh05G007400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACGAGAGTTCAGGAGTTCAAAAATTGCAACAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAGAATGGCAACGAAAGTTCAGGAGTTTAAGAAGGGCAATGAGAGTTTAGAGTTCAAGAATGGCAATGGGAGGTCAGGAGTTCAAAAATGGCAATGGGAGTTTGGGAGTTCAAGAATGGCAACAGGAATTCGGGTGTTCAGAAATTGCAATTCGAAAGTTCAAGAATGGCAATGGGAGTTCAAGAGTCAAGAATGGCAACAGGAGGTCGGGAGTTCAAGAATGACAACGAGAGGTTGAGATTTCAAGAATGGCAACGGGAGTTCGAGATTTCAAGAATGGCAACGGGAGTTCGAGATTTCAAGAATGGCAACAGGAGTTTGGGAATTCAAGAATGACAATGGGAGTTTGGAGTTAAAGTATGGCAACGGGAGTTCGAGAGTTCAAGAATGACAATAGGAGTTTGGGTGTTCAAAAATTGCAACATGAGTTCAAGAATGGCAACGGGAGTTTGGAGTTCAAGATTGGTAACGGGATTTCAGAAGCTCAAGAATGACACGGGAGTTCAGGAGTTCAAGAATGGCAACGGGAGTTTGGAGTTCAAGAATTGCAATGGGAGGTCGAGAGTTCAAGAATTTCAACGGGAGGTCGAGAGTTCAAGAATGGCAACGAGAGTTTGAGAGTTCAAGAATGGCAACAGGAGTTCGGGAGTTCAAGAATGACAATGGGAGTTCTAGAGTTCAGGAAAGACAATGAAAGGTTGGGAGTTCAAGAATGTTAACAAGAGTTTGGGAGTTCAAGAATGGCAACGGAAGGTCGGGAGTTCAAGAATGGCAACGAGAGTTTAAGAATGACAACGGGAGTTAGGGAGTTCTAGAATGGCATCAAGAGTTAGGGAGCTCAAGAATTACAACGGGACGTCGGGAGTTCAAGAATGGCAATGGAAAGTCAGGAGTGTTCAAGTATGACCTTTCTTTTATATAAAAACCTTTCTTTATCAGACACGAGTTCTCTTTAATCTTGATCATTAAGGTAATCTTTTCCATTTTAATAATTTAGATCTAGAGATCTTGCTCTTTAATAAGGTTTTTCGATCAAAATCCAAGAGTTCCTAACATCTTGCATTCAACATACGTTCCTCTAGTGACGTTAAATTCACCTTGCTCTCGATTGCACGTGTTGTTGACAATGGCAACCACTAGGCTTAGCAATGTGTGACAACTACACTCTATAGTAGCCTACACACAATAACTACGAAAAGTACGACTACAATGCAGCCTCAAATTTAAAGCTAACCAAATAGAATTGAAACCTTATCCAACCTAATATAATATATATCAATGAGATCGAGTATAGTACCAATCAAATTTTGGTGCTGTTCATTTGAACTTAGAGACAAATATGCACAAAGATAAGAATATTAAAGAGAATAATTTTATATTCTCAAGATTAGAATTGTCCTATCATTCGACTTGAAATAAACTAAAAACGAATGATAACTTACAAAATATTCGTAAACTGACTAAAAGAATTTCAATTCCATGTATAATCTAAAATATGTTTTTTATATTAATTGAGTCACAAACCAACGCGAGTTTTTCGATCATCACATGCATTCTAGAAAATGTTTTTTTTAAGATCTCCCGAATGGTTCCATTGTTTGAACCACCAAAGGATACGCATCTTATTAGTATAAATAACGACTCACAATTTTTTTAAGTCTATTTTAATTATCCTATCTTCATTATCACTCTTATTTAGATGTGGTCTCGATTCATTCATATATCTCTCCTTTACAAAGTGTCACATACCTAATATAAAATTATTTAAATTTTTATTAAAGGGAATTGGGAATATATTCACTAAGATAAAGAATGACGTCATAAAAACAAAAATCTCTTGTTTTTTCCCCCACTTTCTGTTACGATGAGCATATTCCTTTCCCAATTTCAAATTAAAATTGAGAATTTGCATTTCCACTCACTCAATAATATATTTTTATTTAAAAAATTATAAGAAAAAGACTGAACTTTTGACATTCTTTTTTTTTAACATAATTCCAAAATTAATTAATTTGGAAAGTTTTGGAGAAATAAAAGAAATTTAAACCAAAATTCCCATTAATGTAAAAATAAAATTATTTTATTTATATAATTTCAAAAGCACTATCAACTACATAATTTTCTTTTTTTCAAAATAAATTCAAGTATTTCAATTTAAAATCGAAAAATAATATTTAATACTAAAATAAATTATGAAAATAAAATTATAAAATATTAAATTATTAAAAAAATTATGTACACTGAATTTATATTAAATTAGTATTATTAGAATAATATATTTTGGTCTAAATATTTTAGAATGGACTTAAAAAATTTAATAACGAATTTAATGCCACGTGGGAATGGCATTATTGAAATAAAAGGGAGAAAGAAGGGTAGTATTGGAGGGATCATATTCTCTCCTTTATTTCTCTCTACCTGAGTTTTGTTTAATGAGCTACTTCGACGTGAATGAATCGTTTTGTTTGTGCTCTTCCGTGATTTTCTTCTTCTCCATTCTGGGTTTTTTGACCGTTGCTTTTCTTCTAAAACCCCCCATTTCTCTCTCTACCTTCATGATCGTCTCTGTCAGTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGGTACTTCAATGATTTTGTGTTTTTTTCTCTAGTTTTTCTTCTGGGTTTCCATAGTTTTCTGTGAATATATTAAGATCGATGAACTATTTGTTGTTGAACTATGAATTCTTAGGGATTTTGTGCCTTTTCTCATCATTTGTTCTTCTGGGTTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTGTTGAACTATGAATTCTTAGGGATCTTGTGCTTTTTCTCATCATTTGTTCTTCTGGATTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTGTTGAACTATGAATTCTTAGGGATCTTGTGCTTTTTCTCATCATTTGTTCTTCTGGGTTGCTATTGTTTTCTGTTGAAATCGTAACATTGCTTCAGTATTTGTTGTTGAACTATGAATTCTTAGGGATTTTATGCTTTTCGTCATCATTTGTTCTTCTGGGCTGTCATAGTTTTCCGTGGGGATAACGATATTTCTTCTGTATTGCTTGATGAATTGTAATCTTTCAGGGATCATGTGATTTTATCTCAACATTTACTTCTAGGTTGCTATAACCTTGCTGAAATATTTGTTGTTGAACTGTAAATTTTCAGGGATTAAGTGTTTTTTTCTGTTCCGGATTGCTATGTTTGCTATGTTCAGGGATTATGTGCTTTTTTCTCTACATTTCCTCTTCTGGGTTGCTATTGTTTTCTTGAGGAAATAAGAACATCGTTTCTATATTTCTTGTGAAACTCTAAATTTTTGTTCACTCTCTCGCTCTCTTCTCCTTCTCAATGAATGTCTCAGACCACTTTGTAGAGAGAGAGAGAGAAACAGAGAGGGGTTTATTTGTAATTTGATATTTGATCGGTTTCTCCATGTGAAGTCTGCAAATGGGTCCTTTACTTTGAGCCCTTTATCTTCTTTTTTTGTGTTTTGCTAAGCTCGAAATATGACAGTCATCATTCTTCATTCTGCCTGTTTTTGACTTTCTTTTCATTATTTTGTAATTTTATATTGCTATCCTTTTGTTTTTTGGTTCATAATATAATATATCTCATCAGTTTCCTTTTGAATTTCGAACTGGCAAGTTAAGGATTAGAGGTTCCTGTTGTTTCAGCTGAAATCTTTGACAACTCCTCAATAGAATCTTTTGTTCTTTTTTTGTGTTCTTTAACTTCTAAATCAAGAAAAGCATTAATCCTCTAAACCCTCCTCTCTGTATACTCAAATATGTTGTAGAATCCTCCATTTCTGTTGGTTTTGATTTGAAATAGGATCTTGATTCCCTGTTGTTCTTCCTGGTTCTTGTTCTGTGTGTGAATTTGGCATTGCTTTTGCCTGAACAGCCAAGAGAAACCTTATGAATCTGGCAAGAAACACACAGCAATATCCTTGTGATTTTGGTTTCGATTCGAGCTTGACGAATTCGTAG

mRNA sequence

ATGACAACGAGAGTTCAGGAGTTCAAAAATTGCAACAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAGAATGGCAACGAAAGTTCAGGAGTTTAAGAAGGGCAATGAGAGTTTAGAGTTCAAGAATGGCAATGGGAGGTCAGGAGTTCAAAAATGGCAATGGGAGTTTGGGAGTTCAAGAATGGCAACAGGAATTCGGGTGTTCAGAAATTGCAATTCGAAAGTTCAAGAATGGCAATGGGAGTTCAAGAGTCAAGAATGGCAACAGGAGGTCGGGAGTTCAAGAATGACAACGAGAGGAGTTCAAGAATGGCAACGGGAGTTTGGAGTTCAAGAATTGCAATGGGAGGTCGAGAGTTCAAGAATTTCAACGGGAGGTCGAGAGTTCAAGAATGGCAACGAGAGTTTGAGAGTTCAAGAATGGCAACAGGAGTTCGGGAGTTCAAGAATGACAATGGGAGTTCTAGAGTTCAGGAAAGACAATGAAAGGTTGGGAGTTCAAGAATTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGCCAAGAGAAACCTTATGAATCTGGCAAGAAACACACAGCAATATCCTTGTGATTTTGGTTTCGATTCGAGCTTGACGAATTCGTAG

Coding sequence (CDS)

ATGACAACGAGAGTTCAGGAGTTCAAAAATTGCAACAGGAGTTCAAAAATGGCAACGGGAGTTTGGAGTTCAAGAATGGCAACGAAAGTTCAGGAGTTTAAGAAGGGCAATGAGAGTTTAGAGTTCAAGAATGGCAATGGGAGGTCAGGAGTTCAAAAATGGCAATGGGAGTTTGGGAGTTCAAGAATGGCAACAGGAATTCGGGTGTTCAGAAATTGCAATTCGAAAGTTCAAGAATGGCAATGGGAGTTCAAGAGTCAAGAATGGCAACAGGAGGTCGGGAGTTCAAGAATGACAACGAGAGGAGTTCAAGAATGGCAACGGGAGTTTGGAGTTCAAGAATTGCAATGGGAGGTCGAGAGTTCAAGAATTTCAACGGGAGGTCGAGAGTTCAAGAATGGCAACGAGAGTTTGAGAGTTCAAGAATGGCAACAGGAGTTCGGGAGTTCAAGAATGACAATGGGAGTTCTAGAGTTCAGGAAAGACAATGAAAGGTTGGGAGTTCAAGAATTGGCAGTGTGTGATCAAGCATTCTTACACTATTCTCTGTTCCTTCCCGCCGGCCGTGATTCATTCATCCCACCAGCCAAGAGAAACCTTATGAATCTGGCAAGAAACACACAGCAATATCCTTGTGATTTTGGTTTCGATTCGAGCTTGACGAATTCGTAG

Protein sequence

MTTRVQEFKNCNRSSKMATGVWSSRMATKVQEFKKGNESLEFKNGNGRSGVQKWQWEFGSSRMATGIRVFRNCNSKVQEWQWEFKSQEWQQEVGSSRMTTRGVQEWQREFGVQELQWEVESSRISTGGREFKNGNESLRVQEWQQEFGSSRMTMGVLEFRKDNERLGVQELAVCDQAFLHYSLFLPAGRDSFIPPAKRNLMNLARNTQQYPCDFGFDSSLTNS
Homology
[Close]
BLAST of CmoCh05G007400 vs. NCBI nr
Match: KAG6598885.1 (hypothetical protein SDJN03_08663, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-15
Identity = 57/126 (45.24%), Postives = 67/126 (53.17%), Query Frame = 0 

Query: 41  EFKNGNGRSGVQKWQWEFGSSRMATGIRVFRNCNSKVQEWQWEFKSQEWQQEVGSSRMTT 100
           EFKNGNGR GVQ+W+W+F SSR+A                                    
Sbjct: 7   EFKNGNGRLGVQEWEWKFKSSRLA------------------------------------ 66

Query: 101 RGVQEWQREFGVQELQWEVESSRISTGGREFKNGNESLRVQEWQQEFGSSRMTMGVLEFR 160
            GVQ+WQREF         +SSR++T GREFKNGN SLRV+ WQQEF SSRMT  V EF+
Sbjct: 67  MGVQKWQREF---------KSSRMATSGREFKNGNGSLRVKVWQQEFESSRMTTRVQEFK 87

Query: 161 KDNERL 167
             N  L
Sbjct: 127 NGNGSL 87

[Close]
BLAST of CmoCh05G007400 vs. NCBI nr
Match: KAG6586097.1 (Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 191 SFIPPAKRNLMNLARNTQQYPCDFGFDSSLTNS 224
           +FIP A+RNLMNLARNTQQYP DFGFDSSLTNS
Sbjct: 37  AFIPSAQRNLMNLARNTQQYPRDFGFDSSLTNS 69

[Close]
BLAST of CmoCh05G007400 vs. NCBI nr
Match: KAG6598884.1 (hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-04
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 0 

Query: 98  MTTRG--VQEWQREFGVQELQWEVESSRISTGGREFKNGNESLRVQEWQQEF----GSSR 156
           MTTRG   +      GVQE Q E  + R++TGGR+FKNGN    VQEWQ+EF    GS R
Sbjct: 1   MTTRGRDFKNDNERSGVQEWQLEFWTLRMTTGGRKFKNGNGRSGVQEWQREFKNGNGSLR 60

The following BLAST results are available for this feature:
BLAST of CmoCh05G007400 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G007400 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G007400 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598885.13.0e-1545.24hypothetical protein SDJN03_08663, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586097.13.4e-0687.88Cytochrome c oxidase subunit 3, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6598884.12.4e-0454.69hypothetical protein SDJN03_08662, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh05G007400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G007400.1CmoCh05G007400.1mRNA