CmoCh05G007320 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G007320
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH146-like
LocationCmo_Chr05: 3841538 .. 3841867 (-)
RNA-Seq ExpressionCmoCh05G007320
SyntenyCmoCh05G007320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

mRNA sequence

ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

Coding sequence (CDS)

ATGGCAATGGCTGAATCAGCTACTCAATTTGCGTGGGGCAATGCTCTAAAGAAGAAGCTTCTTCAAACAAAAGTTGCCAATGGTTTTGATTTCTCTCTCCAAACACTGAAATTTTCTCGAGAAAATTTAGAAAGAGAAGAAGAAGAGGAAGAGAAGATGGAAAATGGGTTGAAAAGGCTGAGGAAGATCATACCAGGCGGCGGCGGCGGTGGTGGTTTTAATGGAGGTTTGGAAGAGGAAGAATTGTTGAAACAAACTGAAAGTTACATAAAATGTCTTGAGTTGCAGGTGAATGTTCTTAGATGTTTGGTTGAAACAAACACAATTTGA

Protein sequence

MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Homology
BLAST of CmoCh05G007320 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.5e-06
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQ--TKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLK 60
           MA A   +   W  AL ++  +   K+     FS +  K S +   R  +    +E   +
Sbjct: 56  MARAAGGSSRLWSRALLRRADKDDNKIVR---FSRRKWKISSKR-RRSNQRAPVVEEAAE 115

Query: 61  RLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVE 106
           RLR ++PGG       GG+E  +L+++T  YIKCL +QV V++CLV+
Sbjct: 116 RLRNLVPGG-------GGMETSKLMEETAHYIKCLSMQVKVMQCLVD 151

BLAST of CmoCh05G007320 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.4e-05
Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKL-LQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKR 60
           MA+A SA +FAW   L +KL   +        S   ++      +    EE  +E  L+ 
Sbjct: 57  MALALSAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDKEGGNEEGGIEERLRE 116

Query: 61  LRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNT 109
           L+K++PGG         +  EE+L +  +YIKCLELQ   L+ +V+ +T
Sbjct: 117 LKKLLPGG-------EEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

BLAST of CmoCh05G007320 vs. ExPASy TrEMBL
Match: A0A6J1EPJ9 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111436209 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL
Sbjct: 54  MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 113

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 114 RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 162

BLAST of CmoCh05G007320 vs. ExPASy TrEMBL
Match: A0A6J1K5R7 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111491923 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLK+L
Sbjct: 54  MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKKL 113

Query: 61  RKIIP--GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIP  GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 114 RKIIPGGGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 164

BLAST of CmoCh05G007320 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.3e-30
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTK---VANGFDFSLQTLKFSRENLEREEE--------E 60
           MAMA+SAT+F+WGNALKKKLLQ +    +NGF  SLQ +KFSRENLERE+E        E
Sbjct: 62  MAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHE 121

Query: 61  EEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNT 109
           E K+ENGL +LRKI+PGG      NG LEE++L KQTESYIKCLELQVNVLRCLV+TNT
Sbjct: 122 ERKIENGLMKLRKIVPGGS-----NGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT 175

BLAST of CmoCh05G007320 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.3e-30
Identity = 79/115 (68.70%), Postives = 92/115 (80.00%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKV------ANGFDFSLQTLKFSRENLEREEEEEEKME 60
           MAMA SA++FAWG+ALK+KLLQ +        N FDFSLQTLKFSRE  E EEE+++KME
Sbjct: 57  MAMALSASEFAWGHALKQKLLQKQENGNGNGRNSFDFSLQTLKFSREKEEEEEEDKKKME 116

Query: 61  NGLKRLRKIIPGGGGGGGFNGG-LEEEELLKQTESYIKCLELQVNVLRCLVETNT 109
           NGL +LRKI+PGG      NG  LEE++LLKQTESYIKCLELQVNVLRCLV+TNT
Sbjct: 117 NGLVKLRKILPGGENNNDSNGDLLEEDDLLKQTESYIKCLELQVNVLRCLVDTNT 171

BLAST of CmoCh05G007320 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.3e-29
Identity = 80/122 (65.57%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTK---VANGFDFSLQTLKFSRENLEREEE--------- 60
           MAMA+SAT+F+WGNALKKKLLQ +    +NGF FSL  +KFSRENLERE+E         
Sbjct: 62  MAMAQSATEFSWGNALKKKLLQREDDNGSNGFGFSL-PVKFSRENLEREDEEHEEHEEHE 121

Query: 61  --EEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVET 109
             EE K+ENGL +LRKI+PGG      NG LEE++L KQTESYIKCLELQVNVLRCLV+T
Sbjct: 122 EREERKIENGLMKLRKIVPGGS-----NGELEEDDLFKQTESYIKCLELQVNVLRCLVDT 177

BLAST of CmoCh05G007320 vs. NCBI nr
Match: XP_022929709.1 (transcription factor bHLH146-like [Cucurbita moschata])

HSP 1 Score: 211.1 bits (536), Expect = 4.9e-51
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL
Sbjct: 54  MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 113

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 114 RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 162

BLAST of CmoCh05G007320 vs. NCBI nr
Match: KAG6598877.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL
Sbjct: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60

Query: 61  RKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIPGGGGGGG NGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 61  RKIIPGGGGGGGLNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 109

BLAST of CmoCh05G007320 vs. NCBI nr
Match: KAG7029819.1 (Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL
Sbjct: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60

Query: 61  RKIIP---GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIP   GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 61  RKIIPGGGGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 112

BLAST of CmoCh05G007320 vs. NCBI nr
Match: XP_022996791.1 (transcription factor bHLH146-like [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 3.5e-49
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLK+L
Sbjct: 54  MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKKL 113

Query: 61  RKIIP--GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIP  GGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 114 RKIIPGGGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 164

BLAST of CmoCh05G007320 vs. NCBI nr
Match: XP_023545673.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKRL 60
           MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRE+LEREEEEEEKMENGLK+L
Sbjct: 54  MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSREHLEREEEEEEKMENGLKKL 113

Query: 61  RKIIPGGG------GGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 110
           RKIIPGGG      GGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI
Sbjct: 114 RKIIPGGGGGGGGDGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNTI 168

BLAST of CmoCh05G007320 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-09
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQTKVANGFDFSLQTLKFSRENLER--------------E 60
           MA A SA +FAW   L++KLL    ++ +D  + T     E LER              E
Sbjct: 64  MAFALSAQEFAWSRFLQQKLL----SSPYDDPISTSSSPSEILERSSKRQGGEKHQDSDE 123

Query: 61  EEEEEKMENGLKRLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVET 109
           EEE  +++  LK L+K++PGG         +  EE+L +  SYI CLELQ+ VL+ +V+ 
Sbjct: 124 EEEGGEIKKRLKELQKLLPGG-------EEMNMEEILSEIGSYIVCLELQMIVLKSIVQD 174

BLAST of CmoCh05G007320 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 )

HSP 1 Score: 51.2 bits (121), Expect = 6.0e-07
Identity = 35/107 (32.71%), Postives = 56/107 (52.34%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKLLQ--TKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLK 60
           MA A   +   W  AL ++  +   K+     FS +  K S +   R  +    +E   +
Sbjct: 56  MARAAGGSSRLWSRALLRRADKDDNKIVR---FSRRKWKISSKR-RRSNQRAPVVEEAAE 115

Query: 61  RLRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVE 106
           RLR ++PGG       GG+E  +L+++T  YIKCL +QV V++CLV+
Sbjct: 116 RLRNLVPGG-------GGMETSKLMEETAHYIKCLSMQVKVMQCLVD 151

BLAST of CmoCh05G007320 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 47.8 bits (112), Expect = 6.7e-06
Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 1   MAMAESATQFAWGNALKKKL-LQTKVANGFDFSLQTLKFSRENLEREEEEEEKMENGLKR 60
           MA+A SA +FAW   L +KL   +        S   ++      +    EE  +E  L+ 
Sbjct: 57  MALALSAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDKEGGNEEGGIEERLRE 116

Query: 61  LRKIIPGGGGGGGFNGGLEEEELLKQTESYIKCLELQVNVLRCLVETNT 109
           L+K++PGG         +  EE+L +  +YIKCLELQ   L+ +V+ +T
Sbjct: 117 LKKLLPGG-------EEMNVEEMLSEIGNYIKCLELQTIALKSIVQDST 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SKX18.5e-0632.71Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1[more]
Q9SUM59.4e-0532.11Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A6J1EPJ92.4e-51100.00transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111436209 ... [more]
A0A6J1K5R71.7e-4997.30transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111491923 PE... [more]
A0A6J1FJ331.3e-3067.23transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 ... [more]
A0A6J1DIU02.3e-3068.70transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4... [more]
A0A6J1I0E64.3e-2965.57transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE... [more]
Match NameE-valueIdentityDescription
XP_022929709.14.9e-51100.00transcription factor bHLH146-like [Cucurbita moschata][more]
KAG6598877.12.4e-5099.08Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7029819.12.1e-4997.32Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022996791.13.5e-4997.30transcription factor bHLH146-like [Cucurbita maxima][more]
XP_023545673.13.9e-4893.04transcription factor bHLH146-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G18969.12.2e-0936.89BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transc... [more]
AT2G43060.16.0e-0732.71ILI1 binding bHLH 1 [more]
AT4G30180.16.7e-0632.11sequence-specific DNA binding transcription factors;transcription regulators [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..63
NoneNo IPR availablePANTHERPTHR33124:SF42TRANSCRIPTION FACTOR BHLH146coord: 1..28
NoneNo IPR availablePANTHERPTHR33124:SF42TRANSCRIPTION FACTOR BHLH146coord: 42..108
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 1..28
coord: 42..108
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 46..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G007320.1CmoCh05G007320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity