CmoCh05G006770 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G006770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S11, chloroplastic
Location	Cmo_Chr05: 3430942 .. 3432484 (-)
RNA-Seq Expression	CmoCh05G006770
Synteny	CmoCh05G006770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTTTTACTTTTTTTCAAATTTTCATGCATTTCTTCGACTTTTGGAACTCGGCTCTAGAGCGCCTCCGTGCTAAAAACTCGAGAAGATCTAAGATTGAACTCCACAGGTCCCCATTTAAATGCCGTGTTTCACAAGTTTTGACTACAGAAGGTTAGAAACACATTTTGGTGATTCAAAATCTTTCCAAAACATGTTTTTAATCGTTCAGAATCAAACATGATAAGACATATCCGGAAGTGGTTTTGATCTAAGTCGAAAGTGGCCATAACCGTTTTCAAATGCAGTTGAAAGGGACCTTACTTCAATGCTATGAGTCTCTATGTATTACACATCCTTTTCAATAGTGACAGTTGGAAAGTGTGACGACTTTAACCTCCACAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTCTCCAAACGAGATAGATACCTGAATTCTAGGGGCATTTGAGACATTTCACAGCTAGCCACGCTTCGAAACCGAGACCTCGTCTTCTCGGAATGAATGAGTGGTCACAAGGAAGGGGAGAAAAAGATAAAAGAGGGTAAATTAAATAATTGTGTGTGTGTGTGTGTGTTTTTGGCTTATTTTGTTACCACCACTAGATTCTGTCTGTGAAGGGCGTGGGGTTAGACATTGTTGAAGAGAGGGCAGGAAAAAACTGAGCATCCAAGTGTTTGGTTAACATCATAGGATGGACAACCAAACATCATATGATTATTAAAACACAATGTTGTCGTCTTTTATGACCACAAACTGAAGCATCAATGTCACTCAGTTGCATGAATGCCTACCTACTTATGGATTGACTTTCCTCTTTTTTTTAGCCTTTTACTTTTGCCGTGAATTCCACTTAATCATCAATACCCCCCTTCAATTTTTCCTGTTCTCATTCTCTTCTTGAAAATTTATATTTGGAGTGGGAATTTAGTCGAAGATTTGAATTTGATTAGTTTTTTCGTTAAATGTCTCATCCTCGTTCATATAATAAACAACATTTGTATGAAATATCAAAGGGCGTTATTCATGTTAAAGCAAGTTTCAATAATACAATTGTGACTATTATAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

mRNA sequence

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

Coding sequence (CDS)

AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGCAGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCAATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACTATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATCGTAGAAGTGGTATACTCTTAA

Protein sequence

KPTTKVGFWAQAKLKRRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPNHSWVRFPFHCSLLSLWAPNGTIIQLDYGHNEARCTGSSNFLVLHWYLWIQRSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAIVEVVYS

Homology

[Close]

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot
Match: Q09ME4 (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-07
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+A QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot
Match: Q9BBQ3 (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus OX=34305 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI  +A QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIRTVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL
Match: A0A2G2V6S4 (50S ribosomal protein L14, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_31747 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 88  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDA 147
           RCTG+S+FLVL WY WI+  R            NAI  +  QGMQR +VMIK P L RD 
Sbjct: 139 RCTGTSSFLVLRWYFWIKGTRRGTPFAAQTAAANAIRTVVDQGMQREEVMIKGPSLERDG 198

Query: 148 ALRAI 151
           ALRAI
Sbjct: 199 ALRAI 203

[Close]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL
Match: A0A2J6LPT2 (S1-like domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_5X50421 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 89  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAA 148
           CTG+S FLVL  Y   +  R           GNAI A+  QGMQRA+VMIK PGLGRD  
Sbjct: 106 CTGASGFLVLCRYSGFRGTRRGTPFAAQTAIGNAIRAVVDQGMQRAEVMIKGPGLGRDTT 165

Query: 149 LRAI 151
           LRAI
Sbjct: 166 LRAI 169

[Close]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL
Match: A0A445DGR9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019861 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 34/63 (53.97%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 88  RCTGSSNFLVLHWYLWIQRSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAAL 147
           RCTGS NF+V                    GN I  +A QGMQRA+VMIK PGLGRDAAL
Sbjct: 26  RCTGSGNFVV------------PFAAQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAAL 76

Query: 148 RAI 151
           RAI
Sbjct: 86  RAI 76

[Close]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL
Match: A0A6H0E8A1 (Ribosomal protein S11 OS=Tachigali costaricensis OX=2723578 GN=rps11 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-06
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAIW +A QGMQRA+VMIK PGLGRDAALRAI
Sbjct: 77  GNAIWTVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL
Match: A0A4S8I6T0 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t15310 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.7e-06
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 119 NAIWAIAYQGMQRAKVMIKSPGLGRDAALRAIVEVVY 156
           NAI  +  QGMQRA+VMIK PGLGRDAALRAIVEVVY
Sbjct: 73  NAIRTVVNQGMQRAEVMIKGPGLGRDAALRAIVEVVY 109

[Close]

BLAST of CmoCh05G006770 vs. NCBI nr
Match: KAG7014534.1 (30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-15
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 91  GSSNFLVLHWYLWIQRSK--DTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALR 150
           GSSNFL+L WYLWIQRSK  DTIC SNR GNAI A+A Q MQ+ +VMIK P LGRDA LR
Sbjct: 19  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLR 78

[Close]

BLAST of CmoCh05G006770 vs. NCBI nr
Match: KAG7029773.1 (30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 4.0e-14
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 15 KRRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPNHSW 59
          +RRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHP HSW
Sbjct: 32 ERRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPIHSW 75

[Close]

BLAST of CmoCh05G006770 vs. NCBI nr
Match: PHT28657.1 (50S ribosomal protein L14, chloroplastic [Capsicum baccatum])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 88  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDA 147
           RCTG+S+FLVL WY WI+  R            NAI  +  QGMQR +VMIK P L RD 
Sbjct: 139 RCTGTSSFLVLRWYFWIKGTRRGTPFAAQTAAANAIRTVVDQGMQREEVMIKGPSLERDG 198

Query: 148 ALRAI 151
           ALRAI
Sbjct: 199 ALRAI 203

[Close]

BLAST of CmoCh05G006770 vs. NCBI nr
Match: XP_030483739.1 (uncharacterized protein LOC115700311 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 106 RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           + +DTIC SNR+ NAI     QGMQ+A+VMIK PGLGRDAALRAI
Sbjct: 37  KKRDTICRSNRSRNAILTRVDQGMQQAEVMIKGPGLGRDAALRAI 81

[Close]

BLAST of CmoCh05G006770 vs. NCBI nr
Match: PLY89337.1 (hypothetical protein LSAT_5X50421 [Lactuca sativa])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-06
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 89  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAA 148
           CTG+S FLVL  Y   +  R           GNAI A+  QGMQRA+VMIK PGLGRD  
Sbjct: 106 CTGASGFLVLCRYSGFRGTRRGTPFAAQTAIGNAIRAVVDQGMQRAEVMIKGPGLGRDTT 165

Query: 149 LRAI 151
           LRAI
Sbjct: 166 LRAI 169

[Close]

BLAST of CmoCh05G006770 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 118 GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI 151
           GNAI A+  QGMQRA+V IK PGLGRDAALRAI
Sbjct: 77  GNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAI 109

The following BLAST results are available for this feature:

BLAST of CmoCh05G006770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09ME4	3.8e-07	84.85	30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=...	[more]
B1A968	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ...	[more]
A0ZZ68	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L937	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ...	[more]
Q9BBQ3	1.1e-06	81.82	30S ribosomal protein S11, chloroplastic OS=Lotus japonicus OX=34305 GN=rps11 PE...	[more]

BLAST of CmoCh05G006770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2V6S4	7.1e-09	53.85	50S ribosomal protein L14, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_...	[more]
A0A2J6LPT2	1.1e-06	54.69	S1-like domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_5X50421 PE=3...	[more]
A0A445DGR9	1.5e-06	53.97	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g019861 PE=3 SV=1	[more]
A0A6H0E8A1	9.7e-06	84.85	Ribosomal protein S11 OS=Tachigali costaricensis OX=2723578 GN=rps11 PE=3 SV=1	[more]
A0A4S8I6T0	9.7e-06	81.08	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t15310 PE=3 SV=...	[more]

BLAST of CmoCh05G006770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014534.1	2.8e-15	74.19	30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG7029773.1	4.0e-14	95.45	30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
PHT28657.1	1.5e-08	53.85	50S ribosomal protein L14, chloroplastic [Capsicum baccatum]	[more]
XP_030483739.1	1.8e-06	68.89	uncharacterized protein LOC115700311 [Cannabis sativa]	[more]
PLY89337.1	2.4e-06	54.69	hypothetical protein LSAT_5X50421 [Lactuca sativa]	[more]

BLAST of CmoCh05G006770 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	3.9e-07	78.79	ribosomal protein S11	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G006770.1	CmoCh05G006770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome