CmoCh05G005820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G005820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 2884122 .. 2885561 (-)
RNA-Seq ExpressionCmoCh05G005820
SyntenyCmoCh05G005820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAACTTGGTAGGCCGACAGATTACATAAATGTCTACTTTTCTCGATACCATATAATACCACTTTCGATGTTTGATTAATAAATGTTTGGTATTTTTATTATAAAATTAGTTTGATGGTTTTTTTTCCCGCTAAATAAATAAAAATATTGTTCAACCTTTTGCTTTCTCTTTAAAAAAAATATATTTCTAAATTAAAAAAAAAAGTTTAATTATAATTTTAAACTCTTAACAAATTCTCAAAAATACTTTTATACATTAAAAAAATAATAATACATAAAAATATCATTAATATCTCAAAATATTCTTTTAACTTAAAAAATATTAAGAATTAAAAAATATATAAATAAATACCTTCAAATATCTTTTAAAAATTAAAAAAATATTATTATCATGAGTATGACGGTTAAAAATATTTTTTTCTTTAGTATTACAATTAAAAAATACTCATCAACTTTAAAAATAATATTAAAAAGTTTAGAGATAATCTATAAAATTTCTAGAGTCGATTTTCGTTTATATATTAACATTAAAAAGTTTTTAAAATTTGTTTTATAAATATTAAGAATTTTACTGTTACATTTAAAATTTCATCTGCATTTCTCAAGTTGGTATTAATAAAACTTTCTAAAATTTAATAATATTTTTTAAATAAAATATTTTTAATCTAAAAATAATATTAAAGAGTTTTTACATTTTTTTAACTATAAAAATACTATTGTATTTTTTAGAGTATTTTTAGATATTAATTTAGCTTTTCTTTTAAAATATAATCTAATGAAATATATAGTAGCGGTATCCACGTCAGACCCGGCAAGCGTGGGTCCCACAATATCCCTTCCAGTGCTCCCTCAAACACGGGAACAAAACGGCCACACCGGACAAACCTCCAAAAGGAGGGGCAGTGGAGAGAGGGAAAAAAAAGTCAGAAGGGCGAAATTACGGAAAAGCCCTTCGTCTATTTCCCACCAACACGTTCGTAGCGCAGAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGCGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGGTATTGTTTCCGATTCGGTTGTGCTTTGGAATCGTTTTAATAATCGTACATTGTTGTTTTCGTCTCGCGGAATGAAACGCATGATGTCGTAAGCTTTGATTCTGTTATATCTGGTTTATCTGCGGATGTTTCTGCTGCATTTTGATAATGATGATCAGTAGTTGTTGCAGTGATTTTCGGTCGATTGATTTGA

mRNA sequence

ATGATGAACTTGCGCAGAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGCGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGTGATTTTCGGTCGATTGATTTGA

Coding sequence (CDS)

ATGATGAACTTGCGCAGAGAAGGACCAGGAATTGGGGAGACGTGTACAACTGCCGCCCCATCCGGAGACTCCGCTCCGGATGGCGCTTGCTTGACCTCCGGACTTCCGTTGAGGAACATTTCTGGCTCAATCCATCACAAGAAGAGAGAGAAAGAAAAAACAGAAGAACGAGAAAGCCACAAGTCTCTGTTGCATCTTACGCTTCTTGGAGGGAAAAAAAGAAACAAAAGTTATTTCCCTCTCTCTTTTGCTCTTTTCAAATTGACTACAAGAGTGATTTTCGGTCGATTGATTTGA

Protein sequence

MMNLRREGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGSIHHKKREKEKTEERESHKSLLHLTLLGGKKRNKSYFPLSFALFKLTTRVIFGRLI
Homology
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BLAST of CmoCh05G005820 vs. NCBI nr
Match: KAG6598742.1 (hypothetical protein SDJN03_08520, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 7.0e-33
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 5   RREGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGSIHHKKREKEKTEERESHKSLL 64
           ++EGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGSIHHKKREKEKTEERESHKSLL
Sbjct: 22  KKEGPGIGETCTTAAPSGDSAPDGACLTSGLPLRNISGSIHHKKREKEKTEERESHKSLL 81

Query: 65  HLTLLGGKKRNKSYFPLSFALFKL 89
           HLTLLGGKKRNK  FP  F  F++
Sbjct: 82  HLTLLGGKKRNKKLFPSLFCSFQI 105

The following BLAST results are available for this feature:
BLAST of CmoCh05G005820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G005820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G005820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598742.17.0e-3388.10hypothetical protein SDJN03_08520, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh05G005820 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G005820.1CmoCh05G005820.1mRNA