CmoCh05G005270 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G005270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	methyl-CpG-binding domain-containing protein 8-like
Location	Cmo_Chr05: 2543336 .. 2543995 (-)
RNA-Seq Expression	CmoCh05G005270
Synteny	CmoCh05G005270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCCACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGCGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGTGAAAAACGGGCGGCGGCGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

mRNA sequence

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCCACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGCGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGTGAAAAACGGGCGGCGGCGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Coding sequence (CDS)

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAGTCTTCGCATGAACACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAGCGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAACGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTTTAGCCCCTCGCAAGCCCCAAATTTCTTCCTCCTCGTCCTCCTCCACATTTCGGTCCCAATCCTCCCACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGCGTAATGGAAATGCCGCTCCGAACTCCAAAAGCGGCTGTGAAAAACGGGCGGCGGCGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Protein sequence

MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQLFVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGRPRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML

Homology

[Close]

BLAST of CmoCh05G005270 vs. ExPASy Swiss-Prot
Match: Q9LME6 (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDSLRMNTLPIIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNSDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

[Close]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL
Match: A0A6J1HBJ5 (methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita moschata OX=3662 GN=LOC111462590 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML
Sbjct: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL
Match: A0A6J1K4I5 (methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111492221 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.6e-107
Identity = 212/219 (96.80%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSND+LRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ SSS SSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAA EEEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAEEEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL
Match: A0A6J1BS27 (methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005043 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.6e-91
Identity = 189/219 (86.30%), Postives = 196/219 (89.50%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSN+S RMNTLPIIDLR LSQS+LYCLSR FSSSSSSTSQSN DDDVLIPK
Sbjct: 1   MASTTMVASPSNESFRMNTLPIIDLRLLSQSELYCLSR-FSSSSSSTSQSNDDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ  SSSSSS  R QS  RLD  SA+I+T  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFPSSSSSSVIRPQSPERLDAESAKIITLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHC V++SYGD DEDLVL+NHIYDESVPDSSYAIFQSIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGDSHCTVDNSYGDEDEDLVLINHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRF Q NGNA PNSKSGCEKR  AEEEEIVMVML
Sbjct: 181 PRKDSNRFPQSNGNAVPNSKSGCEKR--AEEEEIVMVML 216

[Close]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL
Match: A0A6J1BV99 (methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005043 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.8e-90
Identity = 186/216 (86.11%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSN+S RMNTLPIIDLR LSQS+LYCLSR FSSSSSSTSQSN DDDVLIPK
Sbjct: 1   MASTTMVASPSNESFRMNTLPIIDLRLLSQSELYCLSR-FSSSSSSTSQSNDDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ  SSSSSS  R QS  RLD  SA+I+T  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFPSSSSSSVIRPQSPERLDAESAKIITLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHC V++SYGD DEDLVL+NHIYDESVPDSSYAIFQSIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGDSHCTVDNSYGDEDEDLVLINHIYDESVPDSSYAIFQSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVM 217
           PRKDSNRF Q NGNA PNSKSGCEKR  AEEEEIVM
Sbjct: 181 PRKDSNRFPQSNGNAVPNSKSGCEKR--AEEEEIVM 213

[Close]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL
Match: A0A6J1KK67 (methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496461 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 7.5e-89
Identity = 185/219 (84.47%), Postives = 193/219 (88.13%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPS+D  RMNTLPIIDLR LSQS+LYCLSRF SSSSSS SQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSDDRFRMNTLPIIDLRLLSQSELYCLSRFSSSSSSSMSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRK Q  SSSSSST R QS  R D  SA+IVT  KQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKSQFPSSSSSSTIRPQSPDRFDEESAEIVTLFKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVG+SHC VNDSY DGDEDLVLVNHIYDESVP+SSYAIF SIPVDIIDSSY PIKRRRGR
Sbjct: 121 FVGESHCGVNDSYDDGDEDLVLVNHIYDESVPESSYAIFHSIPVDIIDSSYAPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAA NS SGC+KR  AEE+EIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAANSISGCDKR--AEEDEIVMVML 217

[Close]

BLAST of CmoCh05G005270 vs. NCBI nr
Match: XP_022961982.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita moschata])

HSP 1 Score: 411.4 bits (1056), Expect = 5.0e-111
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML
Sbjct: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. NCBI nr
Match: KAG7029632.1 (Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 400.6 bits (1028), Expect = 8.7e-108
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MAS TMVASPSNDSLRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASRTMVASPSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAAA EEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. NCBI nr
Match: KAG6598690.1 (Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVAS SNDSLRMNTLP+IDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK
Sbjct: 1   MASTTMVASHSNDSLRMNTLPVIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAAA EEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAATEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. NCBI nr
Match: XP_022997262.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita maxima])

HSP 1 Score: 397.5 bits (1020), Expect = 7.4e-107
Identity = 212/219 (96.80%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVASPSND+LRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQ SSS SSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKRAA EEEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKRAAEEEEEIVMVML 219

[Close]

BLAST of CmoCh05G005270 vs. NCBI nr
Match: XP_023546077.1 (methyl-CpG-binding domain-containing protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 3.7e-106
Identity = 214/219 (97.72%), Postives = 215/219 (98.17%), Query Frame = 0


Query: 1   MASTTMVASPSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNSDDDVLIPK 60
           MASTTMVAS SNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSN+DDDVLIPK
Sbjct: 1   MASTTMVASSSNDSLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPK 60

Query: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQL 120
           IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSS RLDVGSAQIVTRLKQL
Sbjct: 61  IDRSVFNESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSDRLDVGSAQIVTRLKQL 120

Query: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180
           FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR
Sbjct: 121 FVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGR 180

Query: 181 PRKDSNRFAQRNGNAAPNSKSGCEKRAAAEEEEIVMVML 220
           PRKDSNRFAQ NGNAAPNSKSGCEKR AAEEEEIVMVML
Sbjct: 181 PRKDSNRFAQSNGNAAPNSKSGCEKR-AAEEEEIVMVML 218

[Close]

BLAST of CmoCh05G005270 vs. TAIR 10
Match: AT1G22310.2 (methyl-CPG-binding domain 8 )

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-17
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDSLRMNTLPIIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNSDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQISSSSSSSTFRSQSSHRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

The following BLAST results are available for this feature:

BLAST of CmoCh05G005270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LME6	1.1e-15	41.08	Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmoCh05G005270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBJ5	2.4e-111	100.00	methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1K4I5	3.6e-107	96.80	methyl-CpG-binding domain-containing protein 8-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1BS27	1.6e-91	86.30	methyl-CpG-binding domain-containing protein 8 isoform X2 OS=Momordica charantia...	[more]
A0A6J1BV99	6.8e-90	86.11	methyl-CpG-binding domain-containing protein 8 isoform X1 OS=Momordica charantia...	[more]
A0A6J1KK67	7.5e-89	84.47	methyl-CpG-binding domain-containing protein 8-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of CmoCh05G005270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961982.1	5.0e-111	100.00	methyl-CpG-binding domain-containing protein 8-like [Cucurbita moschata]	[more]
KAG7029632.1	8.7e-108	97.72	Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma ...	[more]
KAG6598690.1	1.9e-107	97.72	Methyl-CpG-binding domain-containing protein 8, partial [Cucurbita argyrosperma ...	[more]
XP_022997262.1	7.4e-107	96.80	methyl-CpG-binding domain-containing protein 8-like [Cucurbita maxima]	[more]
XP_023546077.1	3.7e-106	97.72	methyl-CpG-binding domain-containing protein 8-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh05G005270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22310.2	7.6e-17	41.08	methyl-CPG-binding domain 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..207
None	No IPR available	PANTHER	PTHR37701:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 5..213
IPR037472	Methyl-CpG-binding domain-containing protein 8	PANTHER	PTHR37701	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 5..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G005270.1	CmoCh05G005270.1	mRNA